Wall clock time and date at job start Tue Mar 31 2020 17:22:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53006 * 109.46960 * 2 1 4 4 H 1.09004 * 109.46901 * 305.00163 * 3 2 1 5 5 C 1.52993 * 109.47133 * 185.00224 * 3 2 1 6 6 N 1.46493 * 109.47346 * 185.00123 * 5 3 2 7 7 C 1.34781 * 120.00398 * 180.02562 * 6 5 3 8 8 O 1.21273 * 119.99559 * 359.97438 * 7 6 5 9 9 C 1.50703 * 120.00160 * 179.97438 * 7 6 5 10 10 C 1.50690 * 109.47154 * 179.97438 * 9 7 6 11 11 N 1.28739 * 121.08439 * 90.02519 * 10 9 7 12 12 S 1.69386 * 108.98717 * 180.02562 * 11 10 9 13 13 C 1.76518 * 96.11925 * 0.02562 * 12 11 10 14 14 C 1.38788 * 133.55570 * 180.02562 * 13 12 11 15 15 C 1.36704 * 119.75748 * 179.97438 * 14 13 12 16 16 C 1.38975 * 120.15385 * 0.02562 * 15 14 13 17 17 C 1.36044 * 121.16011 * 359.97438 * 16 15 14 18 18 C 1.40808 * 105.52050 * 359.74290 * 13 12 11 19 19 N 1.46493 * 109.46887 * 64.99846 * 3 2 1 20 20 C 1.36936 * 120.00314 * 274.99849 * 19 3 2 21 21 H 1.08001 * 120.00159 * 0.02562 * 20 19 3 22 22 C 1.38811 * 119.99842 * 180.02562 * 20 19 3 23 23 N 1.31624 * 119.99540 * 179.72505 * 22 20 19 24 24 Si 1.86800 * 120.00451 * 0.02562 * 22 20 19 25 25 H 1.48501 * 109.46758 * 269.72270 * 24 22 20 26 26 H 1.48499 * 109.47026 * 29.72118 * 24 22 20 27 27 H 1.48496 * 109.47474 * 149.72153 * 24 22 20 28 28 H 1.09000 * 109.47269 * 299.99541 * 1 2 3 29 29 H 1.08991 * 109.47041 * 60.00392 * 1 2 3 30 30 H 1.09002 * 109.46608 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47269 * 240.00459 * 2 1 3 32 32 H 1.09000 * 109.47618 * 119.99782 * 2 1 3 33 33 H 1.09009 * 109.47018 * 304.99771 * 5 3 2 34 34 H 1.09002 * 109.47579 * 64.99441 * 5 3 2 35 35 H 0.96998 * 119.99959 * 359.97438 * 6 5 3 36 36 H 1.08997 * 109.47068 * 300.00505 * 9 7 6 37 37 H 1.09008 * 109.46877 * 59.99887 * 9 7 6 38 38 H 1.08005 * 120.11739 * 359.95101 * 14 13 12 39 39 H 1.08000 * 119.92685 * 179.97438 * 15 14 13 40 40 H 1.07995 * 119.42036 * 180.02562 * 16 15 14 41 41 H 1.07998 * 119.89784 * 180.02562 * 17 16 15 42 42 H 0.97000 * 120.00040 * 94.99981 * 19 3 2 43 43 H 0.96999 * 119.99889 * 180.27497 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5648 1.4444 -0.1258 6 7 4.0630 2.8168 -0.0060 7 6 5.3856 3.0632 -0.0869 8 8 6.1633 2.1486 -0.2584 9 6 5.8980 4.4751 0.0357 10 6 7.3998 4.4770 -0.0880 11 7 7.9722 4.6058 -1.2340 12 16 9.6518 4.5659 -1.0187 13 6 9.6121 4.3607 0.7341 14 6 10.5960 4.2387 1.7052 15 6 10.2402 4.0885 3.0166 16 6 8.8982 4.0574 3.3766 17 6 7.9159 4.1750 2.4428 18 6 8.2473 4.3382 1.0799 19 7 1.6524 2.0975 1.2518 20 6 0.4156 2.6734 1.3688 21 1 -0.2743 2.6446 0.5383 22 6 0.0486 3.2944 2.5547 23 7 -1.1382 3.8528 2.6653 24 14 1.2421 3.3451 3.9909 25 1 1.0351 2.1507 4.8488 26 1 2.6352 3.3499 3.4768 27 1 1.0047 4.5748 4.7887 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5137 -0.8899 30 1 -0.3632 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8935 -0.5138 0.8900 33 1 3.9954 0.8312 0.6659 34 1 3.8499 1.0377 -1.0961 35 1 3.4409 3.5484 0.1308 36 1 5.4671 5.0881 -0.7558 37 1 5.6133 4.8820 1.0061 38 1 11.6391 4.2621 1.4259 39 1 11.0036 3.9929 3.7745 40 1 8.6305 3.9386 4.4161 41 1 6.8796 4.1485 2.7453 42 1 2.2718 2.1231 1.9978 43 1 -1.3932 4.2902 3.4927 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732223960.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:22:38 Heat of formation + Delta-G solvation = 19.520470 kcal Electronic energy + Delta-G solvation = -25626.831946 eV Core-core repulsion = 21991.289033 eV Total energy + Delta-G solvation = -3635.542913 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.43684 -39.34513 -37.20425 -36.62055 -33.86524 -32.42285 -31.67631 -30.76866 -30.51541 -30.22560 -27.87838 -24.12862 -23.48342 -23.08095 -22.44663 -20.94049 -20.29888 -19.68804 -18.75740 -17.82381 -16.88561 -16.65913 -16.08776 -15.62242 -15.51525 -15.23592 -14.88886 -14.56948 -14.20274 -14.09939 -13.74819 -13.47400 -13.19854 -13.05122 -12.90498 -12.65557 -12.42861 -12.25974 -12.03202 -11.88815 -11.59796 -11.19749 -11.04351 -11.01050 -10.77071 -10.69499 -10.45703 -10.35081 -10.13184 -10.05758 -9.76523 -9.54403 -9.22568 -9.03990 -8.84178 -8.08655 -7.40436 -5.86743 -3.23153 0.26126 0.89860 1.21212 1.59171 1.85818 2.71366 3.25756 3.26065 3.31721 3.37764 3.47755 4.02782 4.22271 4.48826 4.57911 4.67323 4.90289 4.95578 5.01093 5.04488 5.16311 5.17995 5.25980 5.37672 5.40134 5.56832 5.72362 5.75392 5.84759 5.87336 5.89540 6.01800 6.08758 6.23949 6.35947 6.42844 6.48476 6.48639 6.55252 6.72357 6.89985 7.25349 7.69640 7.89071 8.31203 8.34143 9.09215 9.81333 10.00837 11.30902 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.014052 B = 0.003094 C = 0.002761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1992.166917 B = 9048.565397 C =10140.528668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.133 4.133 3 C 0.168 3.832 4 H 0.063 0.937 5 C 0.113 3.887 6 N -0.713 5.713 7 C 0.518 3.482 8 O -0.541 6.541 9 C -0.084 4.084 10 C 0.186 3.814 11 N -0.430 5.430 12 S 0.182 5.818 13 C -0.133 4.133 14 C -0.084 4.084 15 C -0.082 4.082 16 C -0.124 4.124 17 C -0.046 4.046 18 C -0.120 4.120 19 N -0.747 5.747 20 C -0.243 4.243 21 H 0.095 0.905 22 C 0.007 3.993 23 N -0.930 5.930 24 Si 0.881 3.119 25 H -0.285 1.285 26 H -0.278 1.278 27 H -0.292 1.292 28 H 0.088 0.912 29 H 0.042 0.958 30 H 0.032 0.968 31 H 0.046 0.954 32 H 0.055 0.945 33 H 0.063 0.937 34 H 0.068 0.932 35 H 0.412 0.588 36 H 0.121 0.879 37 H 0.119 0.881 38 H 0.133 0.867 39 H 0.135 0.865 40 H 0.133 0.867 41 H 0.133 0.867 42 H 0.362 0.638 43 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.940 1.585 -1.521 21.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.174 4.174 3 C 0.059 3.941 4 H 0.081 0.919 5 C -0.012 4.012 6 N -0.365 5.365 7 C 0.301 3.699 8 O -0.419 6.419 9 C -0.129 4.129 10 C -0.005 4.005 11 N -0.240 5.240 12 S 0.337 5.663 13 C -0.254 4.254 14 C -0.106 4.106 15 C -0.105 4.105 16 C -0.144 4.144 17 C -0.068 4.068 18 C -0.132 4.132 19 N -0.390 5.390 20 C -0.372 4.372 21 H 0.113 0.887 22 C -0.189 4.189 23 N -0.578 5.578 24 Si 0.711 3.289 25 H -0.212 1.212 26 H -0.204 1.204 27 H -0.219 1.219 28 H 0.107 0.893 29 H 0.061 0.939 30 H 0.052 0.948 31 H 0.065 0.935 32 H 0.073 0.927 33 H 0.082 0.918 34 H 0.086 0.914 35 H 0.248 0.752 36 H 0.139 0.861 37 H 0.137 0.863 38 H 0.151 0.849 39 H 0.153 0.847 40 H 0.151 0.849 41 H 0.151 0.849 42 H 0.195 0.805 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 21.943 1.297 -4.004 22.343 hybrid contribution -0.250 0.130 2.843 2.857 sum 21.693 1.427 -1.161 21.771 Atomic orbital electron populations 1.21781 0.95170 0.99742 1.03782 1.22038 0.97376 0.97818 1.00130 1.20549 0.89760 0.93030 0.90797 0.91878 1.21739 0.95542 0.82374 1.01523 1.45949 1.06782 1.11059 1.72729 1.20071 0.82772 0.89948 0.77086 1.90718 1.55990 1.46137 1.49060 1.20529 0.88354 0.97262 1.06718 1.21814 0.96454 0.94815 0.87393 1.75710 1.02718 1.21088 1.24520 1.84751 1.06341 1.76301 0.98883 1.23484 0.96772 1.05357 0.99743 1.19972 0.97974 1.01175 0.91529 1.21054 0.96595 0.97204 0.95640 1.20789 0.92673 1.00944 1.00038 1.20749 1.00470 0.95781 0.89842 1.20102 0.91219 1.06784 0.95078 1.42829 1.16818 1.67687 1.11703 1.19058 0.90606 1.27698 0.99857 0.88744 1.24667 0.96380 1.00341 0.97517 1.69692 1.19478 1.41749 1.26849 0.86622 0.81015 0.77346 0.83883 1.21205 1.20385 1.21853 0.89347 0.93861 0.94846 0.93541 0.92663 0.91823 0.91395 0.75195 0.86117 0.86258 0.84940 0.84733 0.84892 0.84922 0.80537 0.93001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.58 9.18 37.16 0.34 -2.24 16 2 C -0.13 -2.14 5.61 -26.73 -0.15 -2.29 16 3 C 0.17 2.85 2.59 -67.93 -0.18 2.67 16 4 H 0.06 1.10 8.08 -51.93 -0.42 0.68 16 5 C 0.11 1.73 5.23 -4.05 -0.02 1.71 16 6 N -0.71 -10.44 5.39 -60.30 -0.32 -10.77 16 7 C 0.52 7.77 7.82 -10.98 -0.09 7.69 16 8 O -0.54 -10.07 16.03 5.56 0.09 -9.98 16 9 C -0.08 -1.00 5.97 -29.04 -0.17 -1.17 16 10 C 0.19 2.55 5.37 -81.23 -0.44 2.12 16 11 N -0.43 -6.37 11.84 34.00 0.40 -5.97 16 12 S 0.18 2.30 23.86 -107.50 -2.56 -0.26 16 13 C -0.13 -1.61 6.71 -38.41 -0.26 -1.87 16 14 C -0.08 -0.78 10.02 -39.93 -0.40 -1.18 16 15 C -0.08 -0.66 10.00 -39.86 -0.40 -1.06 16 16 C -0.12 -1.10 9.92 -40.10 -0.40 -1.49 16 17 C -0.05 -0.50 9.72 -39.25 -0.38 -0.88 16 18 C -0.12 -1.54 6.04 -105.14 -0.64 -2.18 16 19 N -0.75 -15.24 4.31 -53.43 -0.23 -15.47 16 20 C -0.24 -6.01 8.24 -15.06 -0.12 -6.13 16 21 H 0.09 2.54 7.55 -52.49 -0.40 2.14 16 22 C 0.01 0.19 5.50 -17.43 -0.10 0.09 16 23 N -0.93 -27.24 13.97 55.49 0.78 -26.47 16 24 Si 0.88 20.33 27.74 -169.99 -4.72 15.62 16 25 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 26 H -0.28 -5.86 6.51 56.52 0.37 -5.49 16 27 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 28 H 0.09 1.86 5.99 -51.93 -0.31 1.55 16 29 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 30 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.06 1.02 8.14 -51.92 -0.42 0.60 16 34 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.41 5.84 8.14 -40.82 -0.33 5.50 16 36 H 0.12 1.23 8.14 -51.93 -0.42 0.81 16 37 H 0.12 1.12 7.54 -51.92 -0.39 0.73 16 38 H 0.13 0.90 8.06 -52.48 -0.42 0.47 16 39 H 0.13 0.66 8.06 -52.49 -0.42 0.23 16 40 H 0.13 0.86 8.06 -52.49 -0.42 0.43 16 41 H 0.13 1.28 7.64 -52.49 -0.40 0.88 16 42 H 0.36 7.45 5.65 -40.82 -0.23 7.22 16 43 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 371.88 15.07 5.60 5.60 Total: -1.00 -32.12 371.88 -10.24 -42.36 By element: Atomic # 1 Polarization: 17.43 SS G_CDS: -5.88 Total: 11.56 kcal Atomic # 6 Polarization: -2.82 SS G_CDS: -3.39 Total: -6.21 kcal Atomic # 7 Polarization: -59.29 SS G_CDS: 0.62 Total: -58.67 kcal Atomic # 8 Polarization: -10.07 SS G_CDS: 0.09 Total: -9.98 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -4.72 Total: 15.62 kcal Atomic # 16 Polarization: 2.30 SS G_CDS: -2.56 Total: -0.26 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -32.12 -10.24 -42.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732223960.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.877 kcal (2) G-P(sol) polarization free energy of solvation -32.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.357 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds