Wall clock time and date at job start Tue Mar 31 2020 17:22:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53006 * 109.46960 * 2 1 4 4 H 1.09004 * 109.46901 * 305.00163 * 3 2 1 5 5 C 1.52993 * 109.47133 * 185.00224 * 3 2 1 6 6 N 1.46493 * 109.47346 * 185.00123 * 5 3 2 7 7 C 1.34781 * 120.00398 * 180.02562 * 6 5 3 8 8 O 1.21273 * 119.99559 * 359.97438 * 7 6 5 9 9 C 1.50703 * 120.00160 * 179.97438 * 7 6 5 10 10 C 1.50690 * 109.47154 * 179.97438 * 9 7 6 11 11 N 1.28739 * 121.08439 * 90.02519 * 10 9 7 12 12 S 1.69386 * 108.98717 * 180.02562 * 11 10 9 13 13 C 1.76518 * 96.11925 * 0.02562 * 12 11 10 14 14 C 1.38788 * 133.55570 * 180.02562 * 13 12 11 15 15 C 1.36704 * 119.75748 * 179.97438 * 14 13 12 16 16 C 1.38975 * 120.15385 * 0.02562 * 15 14 13 17 17 C 1.36044 * 121.16011 * 359.97438 * 16 15 14 18 18 C 1.40808 * 105.52050 * 359.74290 * 13 12 11 19 19 N 1.46493 * 109.46887 * 64.99846 * 3 2 1 20 20 C 1.36936 * 120.00314 * 274.99849 * 19 3 2 21 21 H 1.08001 * 120.00159 * 0.02562 * 20 19 3 22 22 C 1.38811 * 119.99842 * 180.02562 * 20 19 3 23 23 N 1.31624 * 119.99540 * 179.72505 * 22 20 19 24 24 Si 1.86800 * 120.00451 * 0.02562 * 22 20 19 25 25 H 1.48501 * 109.46758 * 269.72270 * 24 22 20 26 26 H 1.48499 * 109.47026 * 29.72118 * 24 22 20 27 27 H 1.48496 * 109.47474 * 149.72153 * 24 22 20 28 28 H 1.09000 * 109.47269 * 299.99541 * 1 2 3 29 29 H 1.08991 * 109.47041 * 60.00392 * 1 2 3 30 30 H 1.09002 * 109.46608 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47269 * 240.00459 * 2 1 3 32 32 H 1.09000 * 109.47618 * 119.99782 * 2 1 3 33 33 H 1.09009 * 109.47018 * 304.99771 * 5 3 2 34 34 H 1.09002 * 109.47579 * 64.99441 * 5 3 2 35 35 H 0.96998 * 119.99959 * 359.97438 * 6 5 3 36 36 H 1.08997 * 109.47068 * 300.00505 * 9 7 6 37 37 H 1.09008 * 109.46877 * 59.99887 * 9 7 6 38 38 H 1.08005 * 120.11739 * 359.95101 * 14 13 12 39 39 H 1.08000 * 119.92685 * 179.97438 * 15 14 13 40 40 H 1.07995 * 119.42036 * 180.02562 * 16 15 14 41 41 H 1.07998 * 119.89784 * 180.02562 * 17 16 15 42 42 H 0.97000 * 120.00040 * 94.99981 * 19 3 2 43 43 H 0.96999 * 119.99889 * 180.27497 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5648 1.4444 -0.1258 6 7 4.0630 2.8168 -0.0060 7 6 5.3856 3.0632 -0.0869 8 8 6.1633 2.1486 -0.2584 9 6 5.8980 4.4751 0.0357 10 6 7.3998 4.4770 -0.0880 11 7 7.9722 4.6058 -1.2340 12 16 9.6518 4.5659 -1.0187 13 6 9.6121 4.3607 0.7341 14 6 10.5960 4.2387 1.7052 15 6 10.2402 4.0885 3.0166 16 6 8.8982 4.0574 3.3766 17 6 7.9159 4.1750 2.4428 18 6 8.2473 4.3382 1.0799 19 7 1.6524 2.0975 1.2518 20 6 0.4156 2.6734 1.3688 21 1 -0.2743 2.6446 0.5383 22 6 0.0486 3.2944 2.5547 23 7 -1.1382 3.8528 2.6653 24 14 1.2421 3.3451 3.9909 25 1 1.0351 2.1507 4.8488 26 1 2.6352 3.3499 3.4768 27 1 1.0047 4.5748 4.7887 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5137 -0.8899 30 1 -0.3632 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8935 -0.5138 0.8900 33 1 3.9954 0.8312 0.6659 34 1 3.8499 1.0377 -1.0961 35 1 3.4409 3.5484 0.1308 36 1 5.4671 5.0881 -0.7558 37 1 5.6133 4.8820 1.0061 38 1 11.6391 4.2621 1.4259 39 1 11.0036 3.9929 3.7745 40 1 8.6305 3.9386 4.4161 41 1 6.8796 4.1485 2.7453 42 1 2.2718 2.1231 1.9978 43 1 -1.3932 4.2902 3.4927 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732223960.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:22:38 Heat of formation + Delta-G solvation = -1.311059 kcal Electronic energy + Delta-G solvation = -25627.735269 eV Core-core repulsion = 21991.289033 eV Total energy + Delta-G solvation = -3636.446236 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.38484 -40.39967 -38.49450 -37.67785 -35.28079 -34.16319 -32.48786 -32.06424 -31.55736 -31.38888 -29.24981 -25.47844 -24.63990 -24.04593 -23.69020 -22.01097 -21.71387 -20.83797 -19.58556 -19.57239 -18.12866 -17.45926 -17.22412 -17.04503 -16.40645 -16.17288 -16.03170 -15.87471 -15.53042 -14.99332 -14.93613 -14.69624 -14.51294 -14.46959 -14.26272 -14.18146 -13.37415 -13.10073 -13.08014 -12.98511 -12.84826 -12.77921 -12.63036 -12.29485 -12.06844 -11.89546 -11.81079 -11.64061 -11.56873 -11.40108 -11.14816 -10.92165 -10.78947 -10.08310 -9.99818 -9.26787 -8.96134 -7.91342 -5.24426 -0.56423 0.16380 0.34758 0.67522 0.98400 1.42842 1.47401 1.54125 1.55771 2.24483 2.56714 2.63388 3.16105 3.40377 3.42202 3.59448 3.75167 3.89864 3.96575 4.03074 4.16157 4.26703 4.32899 4.34052 4.44148 4.45911 4.55626 4.60953 4.74999 4.83366 4.88967 5.00134 5.08245 5.12252 5.19851 5.22936 5.39346 5.43769 5.50733 5.53471 5.72868 5.80476 5.90677 6.30515 6.51830 7.16261 7.17826 7.90575 8.10447 9.29643 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.014052 B = 0.003094 C = 0.002761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1992.166917 B = 9048.565397 C =10140.528668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.129 4.129 3 C 0.170 3.830 4 H 0.059 0.941 5 C 0.122 3.878 6 N -0.710 5.710 7 C 0.521 3.479 8 O -0.579 6.579 9 C -0.081 4.081 10 C 0.179 3.821 11 N -0.466 5.466 12 S 0.167 5.833 13 C -0.147 4.147 14 C -0.091 4.091 15 C -0.071 4.071 16 C -0.122 4.122 17 C -0.062 4.062 18 C -0.148 4.148 19 N -0.744 5.744 20 C -0.206 4.206 21 H 0.066 0.934 22 C -0.062 4.062 23 N -0.985 5.985 24 Si 0.943 3.057 25 H -0.293 1.293 26 H -0.242 1.242 27 H -0.303 1.303 28 H 0.047 0.953 29 H 0.041 0.959 30 H 0.052 0.948 31 H 0.076 0.924 32 H 0.056 0.944 33 H 0.062 0.938 34 H 0.077 0.923 35 H 0.415 0.585 36 H 0.136 0.864 37 H 0.147 0.853 38 H 0.156 0.844 39 H 0.173 0.827 40 H 0.161 0.839 41 H 0.141 0.859 42 H 0.365 0.635 43 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.502 0.949 -0.202 23.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.169 4.169 3 C 0.062 3.938 4 H 0.077 0.923 5 C -0.003 4.003 6 N -0.362 5.362 7 C 0.307 3.693 8 O -0.459 6.459 9 C -0.125 4.125 10 C -0.011 4.011 11 N -0.277 5.277 12 S 0.322 5.678 13 C -0.268 4.268 14 C -0.114 4.114 15 C -0.093 4.093 16 C -0.142 4.142 17 C -0.084 4.084 18 C -0.159 4.159 19 N -0.388 5.388 20 C -0.337 4.337 21 H 0.084 0.916 22 C -0.253 4.253 23 N -0.636 5.636 24 Si 0.772 3.228 25 H -0.220 1.220 26 H -0.166 1.166 27 H -0.231 1.231 28 H 0.066 0.934 29 H 0.060 0.940 30 H 0.071 0.929 31 H 0.095 0.905 32 H 0.075 0.925 33 H 0.080 0.920 34 H 0.096 0.904 35 H 0.252 0.748 36 H 0.154 0.846 37 H 0.165 0.835 38 H 0.174 0.826 39 H 0.190 0.810 40 H 0.179 0.821 41 H 0.159 0.841 42 H 0.198 0.802 43 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 24.545 0.641 -2.723 24.704 hybrid contribution -1.026 0.241 2.396 2.617 sum 23.520 0.882 -0.327 23.539 Atomic orbital electron populations 1.21692 0.96377 1.00396 1.01618 1.21975 0.96110 0.97174 1.01673 1.20660 0.91044 0.93244 0.88897 0.92293 1.21597 0.93784 0.82909 1.02012 1.45930 1.06900 1.10878 1.72488 1.20468 0.82290 0.90710 0.75879 1.90703 1.56809 1.47588 1.50805 1.20617 0.87599 0.95471 1.08833 1.22156 0.97269 0.94092 0.87615 1.75641 1.03811 1.22668 1.25622 1.84574 1.05672 1.77040 1.00523 1.23732 0.97430 1.06340 0.99263 1.20403 0.98666 1.00657 0.91656 1.21542 0.97262 0.94714 0.95771 1.21225 0.92706 0.99225 1.01033 1.21006 1.01663 0.96373 0.89341 1.20303 0.91454 1.08365 0.95751 1.42771 1.15251 1.67622 1.13158 1.18937 0.91232 1.25243 0.98300 0.91639 1.25351 0.98048 1.01410 1.00531 1.69872 1.22056 1.44332 1.27380 0.85584 0.80753 0.76192 0.80259 1.21990 1.16647 1.23074 0.93405 0.93995 0.92873 0.90545 0.92516 0.91978 0.90432 0.74787 0.84594 0.83523 0.82648 0.80954 0.82101 0.84090 0.80186 0.93758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.87 9.18 71.98 0.66 -4.21 16 2 C -0.13 -3.86 5.61 30.60 0.17 -3.69 16 3 C 0.17 5.43 2.59 44.99 0.12 5.55 16 4 H 0.06 1.98 8.08 -2.39 -0.02 1.96 16 5 C 0.12 3.45 5.23 86.38 0.45 3.90 16 6 N -0.71 -19.35 5.39 -463.07 -2.49 -21.84 16 7 C 0.52 14.84 7.82 87.66 0.69 15.53 16 8 O -0.58 -20.99 16.03 -3.01 -0.05 -21.04 16 9 C -0.08 -1.81 5.97 29.10 0.17 -1.64 16 10 C 0.18 4.82 5.37 44.73 0.24 5.06 16 11 N -0.47 -13.96 11.84 -46.33 -0.55 -14.51 16 12 S 0.17 4.26 23.86 -56.49 -1.35 2.91 16 13 C -0.15 -3.41 6.71 23.03 0.15 -3.26 16 14 C -0.09 -1.46 10.02 22.04 0.22 -1.24 16 15 C -0.07 -0.85 10.00 22.09 0.22 -0.63 16 16 C -0.12 -1.71 9.92 21.94 0.22 -1.49 16 17 C -0.06 -1.19 9.72 22.49 0.22 -0.98 16 18 C -0.15 -3.62 6.04 -20.20 -0.12 -3.75 16 19 N -0.74 -29.26 4.31 -322.95 -1.39 -30.65 16 20 C -0.21 -10.23 8.24 84.03 0.69 -9.54 16 21 H 0.07 3.61 7.55 -2.91 -0.02 3.59 16 22 C -0.06 -3.35 5.50 84.86 0.47 -2.88 16 23 N -0.99 -59.37 13.97 21.65 0.30 -59.07 16 24 Si 0.94 41.60 27.74 68.60 1.90 43.51 16 25 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 26 H -0.24 -9.12 6.51 99.48 0.65 -8.48 16 27 H -0.30 -13.91 7.11 99.48 0.71 -13.20 16 28 H 0.05 2.01 5.99 -2.39 -0.01 2.00 16 29 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 32 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 33 H 0.06 1.82 8.14 -2.38 -0.02 1.81 16 34 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 35 H 0.42 10.88 8.14 -92.71 -0.75 10.12 16 36 H 0.14 2.58 8.14 -2.39 -0.02 2.57 16 37 H 0.15 2.40 7.54 -2.38 -0.02 2.38 16 38 H 0.16 1.66 8.06 -2.91 -0.02 1.63 16 39 H 0.17 0.75 8.06 -2.91 -0.02 0.73 16 40 H 0.16 1.32 8.06 -2.91 -0.02 1.30 16 41 H 0.14 2.35 7.64 -2.91 -0.02 2.33 16 42 H 0.36 14.09 5.65 -92.71 -0.52 13.56 16 43 H 0.25 14.80 8.31 -92.71 -0.77 14.03 16 Total: -1.00 -72.20 371.88 0.65 -71.55 By element: Atomic # 1 Polarization: 32.69 SS G_CDS: -0.29 Total: 32.40 kcal Atomic # 6 Polarization: -7.82 SS G_CDS: 4.57 Total: -3.25 kcal Atomic # 7 Polarization: -121.94 SS G_CDS: -4.13 Total: -126.07 kcal Atomic # 8 Polarization: -20.99 SS G_CDS: -0.05 Total: -21.04 kcal Atomic # 14 Polarization: 41.60 SS G_CDS: 1.90 Total: 43.51 kcal Atomic # 16 Polarization: 4.26 SS G_CDS: -1.35 Total: 2.91 kcal Total: -72.20 0.65 -71.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732223960.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.235 kcal (2) G-P(sol) polarization free energy of solvation -72.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds