Wall clock time and date at job start Tue Mar 31 2020 17:22:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.09001 * 109.47326 * 54.99931 * 3 2 1 5 5 C 1.52999 * 109.47054 * 174.99886 * 3 2 1 6 6 N 1.46496 * 109.46967 * 174.99636 * 5 3 2 7 7 C 1.34781 * 120.00112 * 179.97438 * 6 5 3 8 8 O 1.21279 * 119.99773 * 0.02562 * 7 6 5 9 9 C 1.50698 * 120.00149 * 180.02562 * 7 6 5 10 10 C 1.50699 * 109.47015 * 180.02562 * 9 7 6 11 11 N 1.28734 * 121.08733 * 90.02833 * 10 9 7 12 12 S 1.69387 * 108.98369 * 179.97438 * 11 10 9 13 13 C 1.76507 * 96.12179 * 359.97438 * 12 11 10 14 14 C 1.38790 * 133.55536 * 180.02562 * 13 12 11 15 15 C 1.36715 * 119.75645 * 179.97438 * 14 13 12 16 16 C 1.38971 * 120.15321 * 359.97438 * 15 14 13 17 17 C 1.36037 * 121.15595 * 0.02562 * 16 15 14 18 18 C 1.40803 * 105.51987 * 359.74488 * 13 12 11 19 19 N 1.46499 * 109.46679 * 294.99474 * 3 2 1 20 20 C 1.36941 * 119.99583 * 85.00384 * 19 3 2 21 21 H 1.07999 * 120.00378 * 359.97438 * 20 19 3 22 22 C 1.38814 * 119.99657 * 179.97438 * 20 19 3 23 23 N 1.31616 * 120.00233 * 359.97438 * 22 20 19 24 24 Si 1.86808 * 119.99719 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47045 * 359.97438 * 24 22 20 26 26 H 1.48503 * 109.47021 * 120.00069 * 24 22 20 27 27 H 1.48503 * 109.46562 * 240.00024 * 24 22 20 28 28 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 30 30 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 31 31 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 32 32 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 33 33 H 1.09001 * 109.47277 * 294.99844 * 5 3 2 34 34 H 1.09008 * 109.47118 * 54.99823 * 5 3 2 35 35 H 0.97004 * 120.00126 * 0.02562 * 6 5 3 36 36 H 1.09001 * 109.47087 * 300.00282 * 9 7 6 37 37 H 1.08996 * 109.47501 * 59.99922 * 9 7 6 38 38 H 1.08002 * 120.12098 * 359.95292 * 14 13 12 39 39 H 1.07998 * 119.91937 * 179.97438 * 15 14 13 40 40 H 1.07996 * 119.41632 * 180.02562 * 16 15 14 41 41 H 1.08007 * 119.89105 * 180.02562 * 17 16 15 42 42 H 0.96999 * 120.00274 * 264.99733 * 19 3 2 43 43 H 0.97001 * 119.99757 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5648 1.4444 0.1258 6 7 4.0630 2.8168 0.0059 7 6 5.3856 3.0631 0.0868 8 8 6.1634 2.1485 0.2583 9 6 5.8981 4.4750 -0.0359 10 6 7.4000 4.4767 0.0878 11 7 8.1525 4.3505 -0.9490 12 16 9.7741 4.3941 -0.4615 13 6 9.4474 4.5972 1.2611 14 6 10.2588 4.7213 2.3803 15 6 9.6926 4.8701 3.6158 16 6 8.3098 4.8976 3.7512 17 6 7.4941 4.7778 2.6691 18 6 8.0445 4.6282 1.3774 19 7 1.6525 2.0974 -1.2519 20 6 0.4156 2.6734 -1.3689 21 1 -0.2743 2.6446 -0.5385 22 6 0.0486 3.2944 -2.5549 23 7 0.8896 3.3300 -3.5668 24 14 -1.6383 4.0807 -2.7143 25 1 -2.3881 3.9056 -1.4445 26 1 -1.4840 5.5292 -3.0029 27 1 -2.3841 3.4318 -3.8225 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 0.5139 0.8900 31 1 1.8934 -0.5137 0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 3.8499 1.0378 1.0961 34 1 3.9954 0.8311 -0.6659 35 1 3.4409 3.5484 -0.1309 36 1 5.6133 4.8818 -1.0062 37 1 5.4672 5.0880 0.7556 38 1 11.3335 4.7001 2.2756 39 1 10.3215 4.9665 4.4884 40 1 7.8752 5.0160 4.7327 41 1 6.4220 4.8023 2.7978 42 1 2.2720 2.1231 -1.9978 43 1 0.6332 3.7642 -4.3954 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732223961.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:22:42 Heat of formation + Delta-G solvation = 15.672457 kcal Electronic energy + Delta-G solvation = -25405.631507 eV Core-core repulsion = 21769.921731 eV Total energy + Delta-G solvation = -3635.709776 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.36660 -39.23165 -37.08027 -36.48579 -33.73380 -32.42271 -31.64000 -30.71867 -30.41063 -29.67657 -27.64563 -24.12330 -23.56585 -23.11486 -22.51066 -20.84524 -20.16246 -19.50890 -18.71583 -17.44202 -16.77441 -16.60617 -15.99710 -15.54231 -15.39646 -15.11209 -14.83747 -14.46966 -14.19432 -14.00091 -13.60526 -13.50564 -13.12364 -13.06646 -12.82246 -12.47120 -12.26350 -12.18548 -11.91038 -11.82935 -11.44733 -11.00179 -10.95467 -10.92320 -10.77095 -10.61901 -10.45517 -10.21815 -10.08460 -10.02802 -9.65599 -9.56347 -9.18999 -8.99420 -8.68476 -8.03466 -7.06862 -5.84521 -3.14104 0.31340 0.92310 1.27513 1.66865 1.92623 2.84766 3.31170 3.36996 3.43427 3.45791 3.59161 4.08995 4.26318 4.51286 4.59536 4.73545 4.96033 5.02401 5.08086 5.13515 5.20703 5.38631 5.41600 5.47840 5.53516 5.58571 5.81616 5.89326 5.91194 5.93734 5.94366 6.09644 6.13575 6.39816 6.41249 6.51240 6.53351 6.55109 6.58183 6.84888 6.99652 7.21719 7.63850 7.85014 8.32538 8.48479 9.44670 9.99532 10.35328 11.37241 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.016133 B = 0.002601 C = 0.002467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1735.124055 B =10761.728384 C =11347.215258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.134 4.134 3 C 0.164 3.836 4 H 0.054 0.946 5 C 0.116 3.884 6 N -0.708 5.708 7 C 0.518 3.482 8 O -0.545 6.545 9 C -0.083 4.083 10 C 0.185 3.815 11 N -0.425 5.425 12 S 0.182 5.818 13 C -0.134 4.134 14 C -0.083 4.083 15 C -0.085 4.085 16 C -0.126 4.126 17 C -0.046 4.046 18 C -0.119 4.119 19 N -0.722 5.722 20 C -0.238 4.238 21 H 0.074 0.926 22 C -0.011 4.011 23 N -0.928 5.928 24 Si 0.902 3.098 25 H -0.280 1.280 26 H -0.292 1.292 27 H -0.292 1.292 28 H 0.032 0.968 29 H 0.085 0.915 30 H 0.040 0.960 31 H 0.043 0.957 32 H 0.056 0.944 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.412 0.588 36 H 0.123 0.877 37 H 0.117 0.883 38 H 0.132 0.868 39 H 0.134 0.866 40 H 0.132 0.868 41 H 0.132 0.868 42 H 0.385 0.615 43 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.416 4.233 15.129 22.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.175 4.175 3 C 0.053 3.947 4 H 0.072 0.928 5 C -0.009 4.009 6 N -0.360 5.360 7 C 0.302 3.698 8 O -0.423 6.423 9 C -0.128 4.128 10 C -0.005 4.005 11 N -0.236 5.236 12 S 0.337 5.663 13 C -0.255 4.255 14 C -0.106 4.106 15 C -0.107 4.107 16 C -0.146 4.146 17 C -0.068 4.068 18 C -0.131 4.131 19 N -0.364 5.364 20 C -0.369 4.369 21 H 0.092 0.908 22 C -0.207 4.207 23 N -0.576 5.576 24 Si 0.733 3.267 25 H -0.205 1.205 26 H -0.219 1.219 27 H -0.220 1.220 28 H 0.051 0.949 29 H 0.103 0.897 30 H 0.059 0.941 31 H 0.061 0.939 32 H 0.075 0.925 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.248 0.752 36 H 0.141 0.859 37 H 0.135 0.865 38 H 0.150 0.850 39 H 0.152 0.848 40 H 0.150 0.850 41 H 0.150 0.850 42 H 0.219 0.781 43 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 16.858 3.397 13.095 21.616 hybrid contribution -1.989 0.828 0.872 2.324 sum 14.869 4.225 13.967 20.833 Atomic orbital electron populations 1.21769 0.95705 0.99645 1.03242 1.22073 0.96978 0.98427 1.00034 1.20562 0.89842 0.92815 0.91446 0.92799 1.21684 0.95640 0.82456 1.01110 1.45904 1.06704 1.11023 1.72390 1.20038 0.82794 0.89904 0.77081 1.90712 1.55992 1.46157 1.49415 1.20520 0.87984 0.97200 1.07066 1.21848 0.96469 0.94778 0.87443 1.75770 1.00317 1.20365 1.27144 1.84789 1.09843 1.76272 0.95367 1.23511 0.96698 1.05190 1.00073 1.19975 0.99267 1.01078 0.90242 1.21037 0.95226 0.97489 0.96952 1.20755 0.93645 1.01252 0.98944 1.20706 1.00408 0.96049 0.89682 1.20122 0.91795 1.06628 0.94535 1.42479 1.16807 1.65841 1.11301 1.19239 0.91941 1.27668 0.98005 0.90843 1.24742 0.98028 1.01585 0.96390 1.69670 1.35090 1.48842 1.04011 0.86203 0.84130 0.78885 0.77462 1.20550 1.21915 1.21956 0.94879 0.89664 0.94117 0.93867 0.92532 0.91839 0.91830 0.75153 0.85928 0.86486 0.84986 0.84816 0.84995 0.84983 0.78063 0.93504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.55 9.18 37.16 0.34 -2.21 16 2 C -0.13 -2.27 5.61 -26.73 -0.15 -2.42 16 3 C 0.16 2.91 2.59 -67.93 -0.18 2.73 16 4 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 5 C 0.12 1.90 5.23 -4.04 -0.02 1.88 16 6 N -0.71 -11.05 5.39 -60.29 -0.32 -11.38 16 7 C 0.52 8.23 7.82 -10.98 -0.09 8.15 16 8 O -0.54 -10.63 16.03 5.56 0.09 -10.54 16 9 C -0.08 -1.05 5.97 -29.04 -0.17 -1.22 16 10 C 0.18 2.66 5.37 -81.23 -0.44 2.22 16 11 N -0.43 -6.80 11.84 34.00 0.40 -6.40 16 12 S 0.18 2.43 23.86 -107.50 -2.56 -0.14 16 13 C -0.13 -1.64 6.71 -38.41 -0.26 -1.90 16 14 C -0.08 -0.76 10.02 -39.93 -0.40 -1.16 16 15 C -0.08 -0.64 10.00 -39.86 -0.40 -1.04 16 16 C -0.13 -1.01 9.92 -40.10 -0.40 -1.41 16 17 C -0.05 -0.47 9.72 -39.25 -0.38 -0.85 16 18 C -0.12 -1.52 6.04 -105.14 -0.64 -2.16 16 19 N -0.72 -15.98 4.51 -53.42 -0.24 -16.22 16 20 C -0.24 -5.86 7.75 -15.06 -0.12 -5.98 16 21 H 0.07 1.78 7.32 -52.49 -0.38 1.39 16 22 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 23 N -0.93 -26.39 13.06 55.49 0.72 -25.66 16 24 Si 0.90 21.12 29.55 -169.99 -5.02 16.10 16 25 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 26 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 27 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 28 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.08 1.76 5.99 -51.93 -0.31 1.45 16 30 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.06 1.15 8.14 -51.92 -0.42 0.72 16 35 H 0.41 6.30 8.14 -40.82 -0.33 5.97 16 36 H 0.12 1.50 8.14 -51.93 -0.42 1.08 16 37 H 0.12 1.05 7.54 -51.93 -0.39 0.66 16 38 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 39 H 0.13 0.60 8.06 -52.49 -0.42 0.18 16 40 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16 41 H 0.13 1.07 7.64 -52.48 -0.40 0.67 16 42 H 0.39 9.44 7.80 -40.82 -0.32 9.12 16 43 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 LS Contribution 375.00 15.07 5.65 5.65 Total: -1.00 -31.84 375.00 -10.59 -42.44 By element: Atomic # 1 Polarization: 17.81 SS G_CDS: -5.92 Total: 11.89 kcal Atomic # 6 Polarization: -2.36 SS G_CDS: -3.39 Total: -5.75 kcal Atomic # 7 Polarization: -60.22 SS G_CDS: 0.56 Total: -59.65 kcal Atomic # 8 Polarization: -10.63 SS G_CDS: 0.09 Total: -10.54 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Atomic # 16 Polarization: 2.43 SS G_CDS: -2.56 Total: -0.14 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -31.84 -10.59 -42.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732223961.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.109 kcal (2) G-P(sol) polarization free energy of solvation -31.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.436 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds