Wall clock time and date at job start Tue Mar 31 2020 17:22:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.09001 * 109.47326 * 54.99931 * 3 2 1 5 5 C 1.52999 * 109.47054 * 174.99886 * 3 2 1 6 6 N 1.46496 * 109.46967 * 174.99636 * 5 3 2 7 7 C 1.34781 * 120.00112 * 179.97438 * 6 5 3 8 8 O 1.21279 * 119.99773 * 0.02562 * 7 6 5 9 9 C 1.50698 * 120.00149 * 180.02562 * 7 6 5 10 10 C 1.50699 * 109.47015 * 180.02562 * 9 7 6 11 11 N 1.28734 * 121.08733 * 90.02833 * 10 9 7 12 12 S 1.69387 * 108.98369 * 179.97438 * 11 10 9 13 13 C 1.76507 * 96.12179 * 359.97438 * 12 11 10 14 14 C 1.38790 * 133.55536 * 180.02562 * 13 12 11 15 15 C 1.36715 * 119.75645 * 179.97438 * 14 13 12 16 16 C 1.38971 * 120.15321 * 359.97438 * 15 14 13 17 17 C 1.36037 * 121.15595 * 0.02562 * 16 15 14 18 18 C 1.40803 * 105.51987 * 359.74488 * 13 12 11 19 19 N 1.46499 * 109.46679 * 294.99474 * 3 2 1 20 20 C 1.36941 * 119.99583 * 85.00384 * 19 3 2 21 21 H 1.07999 * 120.00378 * 359.97438 * 20 19 3 22 22 C 1.38814 * 119.99657 * 179.97438 * 20 19 3 23 23 N 1.31616 * 120.00233 * 359.97438 * 22 20 19 24 24 Si 1.86808 * 119.99719 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47045 * 359.97438 * 24 22 20 26 26 H 1.48503 * 109.47021 * 120.00069 * 24 22 20 27 27 H 1.48503 * 109.46562 * 240.00024 * 24 22 20 28 28 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 30 30 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 31 31 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 32 32 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 33 33 H 1.09001 * 109.47277 * 294.99844 * 5 3 2 34 34 H 1.09008 * 109.47118 * 54.99823 * 5 3 2 35 35 H 0.97004 * 120.00126 * 0.02562 * 6 5 3 36 36 H 1.09001 * 109.47087 * 300.00282 * 9 7 6 37 37 H 1.08996 * 109.47501 * 59.99922 * 9 7 6 38 38 H 1.08002 * 120.12098 * 359.95292 * 14 13 12 39 39 H 1.07998 * 119.91937 * 179.97438 * 15 14 13 40 40 H 1.07996 * 119.41632 * 180.02562 * 16 15 14 41 41 H 1.08007 * 119.89105 * 180.02562 * 17 16 15 42 42 H 0.96999 * 120.00274 * 264.99733 * 19 3 2 43 43 H 0.97001 * 119.99757 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5648 1.4444 0.1258 6 7 4.0630 2.8168 0.0059 7 6 5.3856 3.0631 0.0868 8 8 6.1634 2.1485 0.2583 9 6 5.8981 4.4750 -0.0359 10 6 7.4000 4.4767 0.0878 11 7 8.1525 4.3505 -0.9490 12 16 9.7741 4.3941 -0.4615 13 6 9.4474 4.5972 1.2611 14 6 10.2588 4.7213 2.3803 15 6 9.6926 4.8701 3.6158 16 6 8.3098 4.8976 3.7512 17 6 7.4941 4.7778 2.6691 18 6 8.0445 4.6282 1.3774 19 7 1.6525 2.0974 -1.2519 20 6 0.4156 2.6734 -1.3689 21 1 -0.2743 2.6446 -0.5385 22 6 0.0486 3.2944 -2.5549 23 7 0.8896 3.3300 -3.5668 24 14 -1.6383 4.0807 -2.7143 25 1 -2.3881 3.9056 -1.4445 26 1 -1.4840 5.5292 -3.0029 27 1 -2.3841 3.4318 -3.8225 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 0.5139 0.8900 31 1 1.8934 -0.5137 0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 3.8499 1.0378 1.0961 34 1 3.9954 0.8311 -0.6659 35 1 3.4409 3.5484 -0.1309 36 1 5.6133 4.8818 -1.0062 37 1 5.4672 5.0880 0.7556 38 1 11.3335 4.7001 2.2756 39 1 10.3215 4.9665 4.4884 40 1 7.8752 5.0160 4.7327 41 1 6.4220 4.8023 2.7978 42 1 2.2720 2.1231 -1.9978 43 1 0.6332 3.7642 -4.3954 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732223961.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:22:41 Heat of formation + Delta-G solvation = -4.731662 kcal Electronic energy + Delta-G solvation = -25406.516296 eV Core-core repulsion = 21769.921731 eV Total energy + Delta-G solvation = -3636.594565 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.34926 -40.35257 -38.36621 -37.63722 -35.23386 -34.14391 -32.45710 -31.61906 -31.46633 -31.25138 -29.10221 -25.67666 -24.71009 -24.04524 -23.66702 -21.96941 -21.57033 -20.72405 -19.55638 -19.21787 -18.10953 -17.41623 -17.20892 -16.93265 -16.31086 -16.21403 -15.99333 -15.72494 -15.58824 -15.06764 -14.90453 -14.72507 -14.45059 -14.34994 -14.18594 -13.84135 -13.29610 -13.07487 -12.99055 -12.89843 -12.78309 -12.72917 -12.59270 -12.33802 -12.05527 -11.85444 -11.77577 -11.62956 -11.58825 -11.32209 -11.11011 -10.89297 -10.75638 -10.02914 -9.96874 -8.96592 -8.94515 -7.85719 -5.12877 -0.52618 0.20580 0.37277 0.70211 1.01567 1.50678 1.53365 1.58925 1.60902 2.30119 2.61543 2.67701 3.18186 3.45353 3.48628 3.78467 3.91316 3.97602 4.00522 4.05282 4.20137 4.30094 4.37826 4.40417 4.47079 4.50383 4.58280 4.64573 4.77816 4.89372 4.93619 5.04938 5.11773 5.15225 5.22886 5.26842 5.42720 5.48189 5.54477 5.58964 5.64322 5.73947 5.85124 6.34346 6.56954 7.21545 7.42347 8.14354 8.38686 9.37393 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.016133 B = 0.002601 C = 0.002467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1735.124055 B =10761.728384 C =11347.215258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.131 4.131 3 C 0.166 3.834 4 H 0.066 0.934 5 C 0.124 3.876 6 N -0.704 5.704 7 C 0.521 3.479 8 O -0.583 6.583 9 C -0.078 4.078 10 C 0.179 3.821 11 N -0.474 5.474 12 S 0.156 5.844 13 C -0.147 4.147 14 C -0.093 4.093 15 C -0.070 4.070 16 C -0.120 4.120 17 C -0.057 4.057 18 C -0.147 4.147 19 N -0.729 5.729 20 C -0.211 4.211 21 H 0.083 0.917 22 C -0.075 4.075 23 N -0.969 5.969 24 Si 0.958 3.042 25 H -0.264 1.264 26 H -0.299 1.299 27 H -0.306 1.306 28 H 0.051 0.949 29 H 0.048 0.952 30 H 0.052 0.948 31 H 0.075 0.925 32 H 0.041 0.959 33 H 0.082 0.918 34 H 0.043 0.957 35 H 0.415 0.585 36 H 0.123 0.877 37 H 0.157 0.843 38 H 0.153 0.847 39 H 0.174 0.826 40 H 0.167 0.833 41 H 0.149 0.851 42 H 0.371 0.629 43 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.270 4.569 19.236 24.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.172 4.172 3 C 0.058 3.942 4 H 0.084 0.916 5 C -0.001 4.001 6 N -0.356 5.356 7 C 0.306 3.694 8 O -0.464 6.464 9 C -0.123 4.123 10 C -0.010 4.010 11 N -0.285 5.285 12 S 0.312 5.688 13 C -0.268 4.268 14 C -0.116 4.116 15 C -0.092 4.092 16 C -0.139 4.139 17 C -0.079 4.079 18 C -0.158 4.158 19 N -0.369 5.369 20 C -0.343 4.343 21 H 0.101 0.899 22 C -0.267 4.267 23 N -0.621 5.621 24 Si 0.789 3.211 25 H -0.188 1.188 26 H -0.226 1.226 27 H -0.234 1.234 28 H 0.070 0.930 29 H 0.067 0.933 30 H 0.071 0.929 31 H 0.094 0.906 32 H 0.060 0.940 33 H 0.100 0.900 34 H 0.061 0.939 35 H 0.252 0.748 36 H 0.141 0.859 37 H 0.175 0.825 38 H 0.171 0.829 39 H 0.191 0.809 40 H 0.185 0.815 41 H 0.167 0.833 42 H 0.203 0.797 43 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 16.687 3.724 17.260 24.295 hybrid contribution -1.886 0.651 -0.184 2.003 sum 14.802 4.376 17.076 23.018 Atomic orbital electron populations 1.21699 0.95867 1.00557 1.01900 1.22006 0.96720 0.97568 1.00894 1.20717 0.90732 0.93168 0.89626 0.91648 1.21560 0.94428 0.82798 1.01318 1.45870 1.06828 1.10769 1.72085 1.20474 0.82309 0.90748 0.75863 1.90693 1.56799 1.47640 1.51230 1.20593 0.87524 0.95555 1.08579 1.22231 0.96957 0.93765 0.88095 1.75698 1.01558 1.22435 1.28802 1.84589 1.09159 1.77365 0.97703 1.23733 0.97146 1.06374 0.99512 1.20399 1.00306 1.00897 0.89988 1.21566 0.95682 0.94634 0.97359 1.21251 0.93826 0.99088 0.99785 1.21049 1.01797 0.96073 0.88989 1.20307 0.92097 1.08466 0.94973 1.42623 1.15830 1.66044 1.12405 1.19542 0.92417 1.24890 0.97434 0.89917 1.25376 1.00877 1.03681 0.96727 1.69819 1.36781 1.51107 1.04384 0.85290 0.81010 0.77390 0.77402 1.18776 1.22636 1.23395 0.93025 0.93308 0.92902 0.90636 0.94022 0.89964 0.93859 0.74827 0.85922 0.82510 0.82915 0.80873 0.81522 0.83299 0.79690 0.94553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.66 9.18 71.98 0.66 -4.00 16 2 C -0.13 -4.16 5.61 30.60 0.17 -3.99 16 3 C 0.17 5.63 2.59 44.99 0.12 5.75 16 4 H 0.07 2.12 8.08 -2.39 -0.02 2.10 16 5 C 0.12 3.93 5.23 86.38 0.45 4.38 16 6 N -0.70 -21.44 5.39 -463.06 -2.49 -23.93 16 7 C 0.52 16.42 7.82 87.66 0.69 17.10 16 8 O -0.58 -22.95 16.03 -3.03 -0.05 -23.00 16 9 C -0.08 -1.96 5.97 29.10 0.17 -1.78 16 10 C 0.18 5.25 5.37 44.74 0.24 5.49 16 11 N -0.47 -15.98 11.84 -46.34 -0.55 -16.53 16 12 S 0.16 4.42 23.86 -56.49 -1.35 3.07 16 13 C -0.15 -3.55 6.71 23.03 0.15 -3.40 16 14 C -0.09 -1.51 10.02 22.04 0.22 -1.29 16 15 C -0.07 -0.77 10.00 22.09 0.22 -0.55 16 16 C -0.12 -1.43 9.92 21.93 0.22 -1.21 16 17 C -0.06 -1.00 9.72 22.49 0.22 -0.78 16 18 C -0.15 -3.67 6.04 -20.20 -0.12 -3.79 16 19 N -0.73 -32.01 4.51 -322.93 -1.46 -33.46 16 20 C -0.21 -10.27 7.75 84.03 0.65 -9.61 16 21 H 0.08 3.84 7.32 -2.91 -0.02 3.82 16 22 C -0.07 -3.97 5.50 84.86 0.47 -3.50 16 23 N -0.97 -56.50 13.06 21.65 0.28 -56.22 16 24 Si 0.96 43.73 29.55 68.60 2.03 45.76 16 25 H -0.26 -11.13 7.11 99.48 0.71 -10.42 16 26 H -0.30 -13.82 7.11 99.48 0.71 -13.11 16 27 H -0.31 -14.50 7.11 99.48 0.71 -13.79 16 28 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 29 H 0.05 1.95 5.99 -2.39 -0.01 1.94 16 30 H 0.05 1.57 8.14 -2.38 -0.02 1.55 16 31 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 32 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 34 H 0.04 1.56 8.14 -2.38 -0.02 1.54 16 35 H 0.41 12.30 8.14 -92.71 -0.75 11.54 16 36 H 0.12 3.07 8.14 -2.39 -0.02 3.05 16 37 H 0.16 2.52 7.54 -2.39 -0.02 2.50 16 38 H 0.15 1.72 8.06 -2.91 -0.02 1.70 16 39 H 0.17 0.55 8.06 -2.91 -0.02 0.53 16 40 H 0.17 0.83 8.06 -2.91 -0.02 0.81 16 41 H 0.15 1.96 7.64 -2.91 -0.02 1.94 16 42 H 0.37 18.50 7.80 -92.71 -0.72 17.78 16 43 H 0.25 14.20 8.31 -92.71 -0.77 13.43 16 Total: -1.00 -72.00 375.00 0.52 -71.48 By element: Atomic # 1 Polarization: 34.46 SS G_CDS: -0.43 Total: 34.03 kcal Atomic # 6 Polarization: -5.72 SS G_CDS: 4.53 Total: -1.19 kcal Atomic # 7 Polarization: -125.93 SS G_CDS: -4.22 Total: -130.15 kcal Atomic # 8 Polarization: -22.95 SS G_CDS: -0.05 Total: -23.00 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.76 kcal Atomic # 16 Polarization: 4.42 SS G_CDS: -1.35 Total: 3.07 kcal Total: -72.00 0.52 -71.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732223961.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.748 kcal (2) G-P(sol) polarization free energy of solvation -71.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds