Wall clock time and date at job start Tue Mar 31 2020 17:11:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47282 * 2 1 4 4 C 1.52995 * 109.47515 * 120.00608 * 2 1 3 5 5 H 1.09004 * 109.47278 * 299.99773 * 4 2 1 6 6 C 1.52998 * 109.47343 * 59.99429 * 4 2 1 7 7 N 1.46500 * 109.47450 * 175.00233 * 6 4 2 8 8 C 1.34776 * 120.00191 * 180.02562 * 7 6 4 9 9 O 1.21616 * 119.99909 * 359.97438 * 8 7 6 10 10 C 1.47378 * 119.99885 * 180.02562 * 8 7 6 11 11 N 1.29688 * 121.83186 * 359.96716 * 10 8 7 12 12 S 1.56004 * 111.74434 * 180.02562 * 11 10 8 13 13 C 1.76256 * 97.56172 * 0.02562 * 12 11 10 14 14 C 1.38696 * 134.18687 * 180.02562 * 13 12 11 15 15 C 1.36799 * 119.63128 * 179.97438 * 14 13 12 16 16 C 1.38904 * 120.30346 * 359.75859 * 15 14 13 17 17 C 1.36329 * 121.04102 * 0.50985 * 16 15 14 18 18 C 1.40417 * 119.95607 * 359.47185 * 17 16 15 19 19 N 1.46500 * 109.47509 * 179.97438 * 4 2 1 20 20 C 1.36934 * 120.00167 * 84.99426 * 19 4 2 21 21 H 1.07995 * 120.00016 * 0.02562 * 20 19 4 22 22 C 1.38808 * 119.99902 * 180.02562 * 20 19 4 23 23 N 1.31619 * 120.00121 * 0.02562 * 22 20 19 24 24 Si 1.86807 * 120.00086 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.46865 * 0.02562 * 24 22 20 26 26 H 1.48501 * 109.46810 * 120.00041 * 24 22 20 27 27 H 1.48489 * 109.47447 * 240.00431 * 24 22 20 28 28 H 1.09004 * 109.46662 * 299.99241 * 1 2 3 29 29 H 1.09001 * 109.47479 * 59.99589 * 1 2 3 30 30 H 1.09004 * 109.47377 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47016 * 240.00403 * 2 1 3 32 32 H 1.08999 * 109.47064 * 180.02562 * 3 2 1 33 33 H 1.09001 * 109.47199 * 300.00582 * 3 2 1 34 34 H 1.09004 * 109.46653 * 60.00753 * 3 2 1 35 35 H 1.09006 * 109.46884 * 55.00430 * 6 4 2 36 36 H 1.08998 * 109.47195 * 295.00439 * 6 4 2 37 37 H 0.97001 * 120.00072 * 359.97438 * 7 6 4 38 38 H 1.08002 * 120.17887 * 359.97438 * 14 13 12 39 39 H 1.08000 * 119.85002 * 179.97438 * 15 14 13 40 40 H 1.08010 * 119.48284 * 180.28520 * 16 15 14 41 41 H 1.08002 * 120.02552 * 179.75583 * 17 16 15 42 42 H 0.97004 * 119.99945 * 265.00237 * 19 4 2 43 43 H 0.97001 * 119.99686 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 1 1.6768 -0.2076 2.1392 6 6 1.5300 -2.1638 1.2491 7 7 2.1142 -2.8884 2.3804 8 6 1.8060 -4.1849 2.5818 9 8 1.0427 -4.7532 1.8246 10 6 2.3933 -4.9136 3.7203 11 7 3.2107 -4.3427 4.5496 12 16 3.6882 -5.3278 5.6611 13 6 2.7874 -6.7427 5.1195 14 6 2.6675 -8.0461 5.5781 15 6 1.8610 -8.9266 4.9104 16 6 1.1611 -8.5187 3.7820 17 6 1.2684 -7.2439 3.3108 18 6 2.0881 -6.3175 3.9753 19 7 3.5051 -0.7219 1.2488 20 6 4.1903 0.3527 1.7496 21 1 3.6507 1.2004 2.1453 22 6 5.5783 0.3524 1.7488 23 7 6.2359 -0.6806 1.2662 24 14 6.5131 1.8186 2.4315 25 1 5.5487 2.8417 2.9092 26 1 7.3674 1.3776 3.5633 27 1 7.3663 2.4018 1.3652 28 1 -0.3633 0.5137 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 3.1300 1.4424 -0.0005 33 1 1.6766 1.9564 -0.8899 34 1 1.6767 1.9562 0.8901 35 1 1.8184 -2.6511 0.3176 36 1 0.4437 -2.1651 1.3387 37 1 2.7234 -2.4353 2.9842 38 1 3.2078 -8.3641 6.4575 39 1 1.7654 -9.9425 5.2641 40 1 0.5245 -9.2236 3.2677 41 1 0.7198 -6.9455 2.4297 42 1 3.9897 -1.4834 0.8936 43 1 7.2059 -0.6806 1.2653 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732558256.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:11:37 Heat of formation + Delta-G solvation = 22.092310 kcal Electronic energy + Delta-G solvation = -25862.359239 eV Core-core repulsion = 22226.927849 eV Total energy + Delta-G solvation = -3635.431390 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 5.22 seconds Orbital eigenvalues (eV) -40.56182 -39.00768 -37.31714 -36.78901 -33.90248 -33.10664 -31.27208 -30.77599 -30.35319 -28.35722 -26.30642 -25.69211 -23.75345 -23.18002 -22.49691 -21.50190 -20.18320 -19.28789 -18.71714 -17.64657 -16.97031 -16.53959 -15.57647 -15.49081 -15.37476 -15.03996 -14.84424 -14.22508 -14.11430 -13.90664 -13.74379 -13.41405 -13.25363 -12.80102 -12.46215 -12.29677 -12.15410 -12.02214 -11.88546 -11.62420 -11.21464 -11.05678 -10.95137 -10.81920 -10.78991 -10.64337 -10.29189 -10.07655 -9.96556 -9.94987 -9.72066 -9.53260 -9.22751 -8.91497 -8.70160 -7.97435 -7.01492 -5.79923 -3.09209 0.28532 0.93122 1.23981 1.57112 1.72884 3.18901 3.37167 3.40968 3.46867 3.48713 3.58668 4.23117 4.54198 4.56453 4.72797 4.99726 5.10854 5.27666 5.29844 5.33425 5.38703 5.54146 5.63260 5.73796 5.75803 5.83782 5.89075 5.96820 5.99265 6.15952 6.20520 6.23999 6.30430 6.37750 6.44246 6.53196 6.61806 6.62741 6.66288 6.88395 7.07192 7.30429 7.68683 7.86465 8.36665 8.41842 9.49080 10.03414 10.39111 11.41932 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.012653 B = 0.003454 C = 0.002828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2212.375734 B = 8105.395010 C = 9899.045527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.108 4.108 3 C -0.139 4.139 4 C 0.170 3.830 5 H 0.054 0.946 6 C 0.112 3.888 7 N -0.688 5.688 8 C 0.585 3.415 9 O -0.541 6.541 10 C 0.091 3.909 11 N -0.475 5.475 12 S 0.388 5.612 13 C -0.204 4.204 14 C -0.074 4.074 15 C -0.093 4.093 16 C -0.123 4.123 17 C -0.041 4.041 18 C -0.086 4.086 19 N -0.721 5.721 20 C -0.236 4.236 21 H 0.073 0.927 22 C -0.010 4.010 23 N -0.928 5.928 24 Si 0.902 3.098 25 H -0.280 1.280 26 H -0.292 1.292 27 H -0.292 1.292 28 H 0.049 0.951 29 H 0.046 0.954 30 H 0.051 0.949 31 H 0.063 0.937 32 H 0.086 0.914 33 H 0.031 0.969 34 H 0.040 0.960 35 H 0.067 0.933 36 H 0.070 0.930 37 H 0.419 0.581 38 H 0.133 0.867 39 H 0.133 0.867 40 H 0.132 0.868 41 H 0.148 0.852 42 H 0.385 0.615 43 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.472 -14.050 7.368 19.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.130 4.130 3 C -0.197 4.197 4 C 0.059 3.941 5 H 0.072 0.928 6 C -0.012 4.012 7 N -0.339 5.339 8 C 0.365 3.635 9 O -0.419 6.419 10 C -0.097 4.097 11 N -0.300 5.300 12 S 0.547 5.453 13 C -0.325 4.325 14 C -0.096 4.096 15 C -0.116 4.116 16 C -0.142 4.142 17 C -0.063 4.063 18 C -0.097 4.097 19 N -0.362 5.362 20 C -0.367 4.367 21 H 0.091 0.909 22 C -0.206 4.206 23 N -0.576 5.576 24 Si 0.733 3.267 25 H -0.205 1.205 26 H -0.220 1.220 27 H -0.219 1.219 28 H 0.068 0.932 29 H 0.065 0.935 30 H 0.070 0.930 31 H 0.082 0.918 32 H 0.105 0.895 33 H 0.050 0.950 34 H 0.059 0.941 35 H 0.085 0.915 36 H 0.088 0.912 37 H 0.257 0.743 38 H 0.151 0.849 39 H 0.150 0.850 40 H 0.150 0.850 41 H 0.165 0.835 42 H 0.219 0.781 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -9.526 -12.828 8.131 17.928 hybrid contribution 0.042 -0.018 -0.670 0.671 sum -9.484 -12.846 7.461 17.625 Atomic orbital electron populations 1.21947 0.96847 1.00967 1.00958 1.21724 0.93529 0.97823 0.99970 1.21819 1.04246 0.94592 0.98995 1.20551 0.86493 0.90924 0.96134 0.92812 1.21859 0.97438 0.93391 0.88555 1.45889 1.47414 1.10040 1.30601 1.17115 0.81277 0.82124 0.82978 1.90731 1.36698 1.68021 1.46421 1.21975 0.98437 0.91708 0.97568 1.71515 1.15358 1.34196 1.08960 1.81477 1.43975 0.91964 1.27867 1.24371 1.04933 1.01926 1.01284 1.19914 0.99581 0.89902 1.00242 1.21044 0.95776 0.99532 0.95224 1.20898 1.00276 0.96058 0.97011 1.20844 0.95128 0.91426 0.98902 1.19629 1.00964 0.92444 0.96628 1.42463 0.98686 1.21283 1.73811 1.19224 0.88776 0.96301 1.32392 0.90865 1.24724 0.96477 0.97666 1.01766 1.69674 1.06807 1.29762 1.51333 0.86203 0.80081 0.82175 0.78251 1.20539 1.21961 1.21947 0.93186 0.93524 0.93024 0.91832 0.89471 0.94975 0.94060 0.91454 0.91165 0.74260 0.84946 0.84957 0.85018 0.83461 0.78093 0.93585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.09 8.84 37.16 0.33 -1.76 16 2 C -0.11 -1.86 2.69 -90.62 -0.24 -2.10 16 3 C -0.14 -2.51 8.26 37.16 0.31 -2.21 16 4 C 0.17 3.17 2.18 -67.93 -0.15 3.03 16 5 H 0.05 1.04 8.08 -51.93 -0.42 0.62 16 6 C 0.11 1.93 4.73 -4.04 -0.02 1.91 16 7 N -0.69 -12.51 5.38 -61.40 -0.33 -12.84 16 8 C 0.58 10.56 7.81 -12.54 -0.10 10.46 16 9 O -0.54 -10.24 15.01 5.26 0.08 -10.16 16 10 C 0.09 1.53 6.82 -81.98 -0.56 0.97 16 11 N -0.47 -7.87 10.49 28.25 0.30 -7.58 16 12 S 0.39 5.00 23.36 -107.50 -2.51 2.49 16 13 C -0.20 -2.54 6.73 -38.49 -0.26 -2.80 16 14 C -0.07 -0.70 10.03 -39.93 -0.40 -1.10 16 15 C -0.09 -0.77 10.00 -39.86 -0.40 -1.16 16 16 C -0.12 -1.15 9.93 -40.02 -0.40 -1.55 16 17 C -0.04 -0.52 9.57 -39.45 -0.38 -0.89 16 18 C -0.09 -1.25 6.10 -105.09 -0.64 -1.89 16 19 N -0.72 -16.74 4.44 -53.43 -0.24 -16.97 16 20 C -0.24 -6.07 7.57 -15.06 -0.11 -6.19 16 21 H 0.07 1.85 7.40 -52.49 -0.39 1.46 16 22 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 16 23 N -0.93 -27.17 13.06 55.49 0.72 -26.45 16 24 Si 0.90 21.86 29.55 -169.99 -5.02 16.83 16 25 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 26 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 27 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 28 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.05 0.68 6.54 -51.93 -0.34 0.34 16 31 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 32 H 0.09 1.87 6.01 -51.93 -0.31 1.56 16 33 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.07 1.11 6.71 -51.93 -0.35 0.76 16 37 H 0.42 8.17 7.58 -40.82 -0.31 7.86 16 38 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 39 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 40 H 0.13 0.88 8.06 -52.48 -0.42 0.45 16 41 H 0.15 1.93 6.64 -52.49 -0.35 1.58 16 42 H 0.39 9.85 7.80 -40.82 -0.32 9.53 16 43 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 367.46 15.07 5.54 5.54 Total: -1.00 -30.13 367.46 -10.31 -40.43 By element: Atomic # 1 Polarization: 20.09 SS G_CDS: -5.72 Total: 14.36 kcal Atomic # 6 Polarization: -2.54 SS G_CDS: -3.12 Total: -5.66 kcal Atomic # 7 Polarization: -64.30 SS G_CDS: 0.45 Total: -63.84 kcal Atomic # 8 Polarization: -10.24 SS G_CDS: 0.08 Total: -10.16 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.83 kcal Atomic # 16 Polarization: 5.00 SS G_CDS: -2.51 Total: 2.49 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -30.13 -10.31 -40.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732558256.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.525 kcal (2) G-P(sol) polarization free energy of solvation -30.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.432 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.22 seconds