Wall clock time and date at job start Tue Mar 31 2020 17:11:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47282 * 2 1 4 4 C 1.52995 * 109.47515 * 120.00608 * 2 1 3 5 5 H 1.09004 * 109.47278 * 299.99773 * 4 2 1 6 6 C 1.52998 * 109.47343 * 59.99429 * 4 2 1 7 7 N 1.46500 * 109.47450 * 175.00233 * 6 4 2 8 8 C 1.34776 * 120.00191 * 180.02562 * 7 6 4 9 9 O 1.21616 * 119.99909 * 359.97438 * 8 7 6 10 10 C 1.47378 * 119.99885 * 180.02562 * 8 7 6 11 11 N 1.29688 * 121.83186 * 359.96716 * 10 8 7 12 12 S 1.56004 * 111.74434 * 180.02562 * 11 10 8 13 13 C 1.76256 * 97.56172 * 0.02562 * 12 11 10 14 14 C 1.38696 * 134.18687 * 180.02562 * 13 12 11 15 15 C 1.36799 * 119.63128 * 179.97438 * 14 13 12 16 16 C 1.38904 * 120.30346 * 359.75859 * 15 14 13 17 17 C 1.36329 * 121.04102 * 0.50985 * 16 15 14 18 18 C 1.40417 * 119.95607 * 359.47185 * 17 16 15 19 19 N 1.46500 * 109.47509 * 179.97438 * 4 2 1 20 20 C 1.36934 * 120.00167 * 84.99426 * 19 4 2 21 21 H 1.07995 * 120.00016 * 0.02562 * 20 19 4 22 22 C 1.38808 * 119.99902 * 180.02562 * 20 19 4 23 23 N 1.31619 * 120.00121 * 0.02562 * 22 20 19 24 24 Si 1.86807 * 120.00086 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.46865 * 0.02562 * 24 22 20 26 26 H 1.48501 * 109.46810 * 120.00041 * 24 22 20 27 27 H 1.48489 * 109.47447 * 240.00431 * 24 22 20 28 28 H 1.09004 * 109.46662 * 299.99241 * 1 2 3 29 29 H 1.09001 * 109.47479 * 59.99589 * 1 2 3 30 30 H 1.09004 * 109.47377 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47016 * 240.00403 * 2 1 3 32 32 H 1.08999 * 109.47064 * 180.02562 * 3 2 1 33 33 H 1.09001 * 109.47199 * 300.00582 * 3 2 1 34 34 H 1.09004 * 109.46653 * 60.00753 * 3 2 1 35 35 H 1.09006 * 109.46884 * 55.00430 * 6 4 2 36 36 H 1.08998 * 109.47195 * 295.00439 * 6 4 2 37 37 H 0.97001 * 120.00072 * 359.97438 * 7 6 4 38 38 H 1.08002 * 120.17887 * 359.97438 * 14 13 12 39 39 H 1.08000 * 119.85002 * 179.97438 * 15 14 13 40 40 H 1.08010 * 119.48284 * 180.28520 * 16 15 14 41 41 H 1.08002 * 120.02552 * 179.75583 * 17 16 15 42 42 H 0.97004 * 119.99945 * 265.00237 * 19 4 2 43 43 H 0.97001 * 119.99686 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 1 1.6768 -0.2076 2.1392 6 6 1.5300 -2.1638 1.2491 7 7 2.1142 -2.8884 2.3804 8 6 1.8060 -4.1849 2.5818 9 8 1.0427 -4.7532 1.8246 10 6 2.3933 -4.9136 3.7203 11 7 3.2107 -4.3427 4.5496 12 16 3.6882 -5.3278 5.6611 13 6 2.7874 -6.7427 5.1195 14 6 2.6675 -8.0461 5.5781 15 6 1.8610 -8.9266 4.9104 16 6 1.1611 -8.5187 3.7820 17 6 1.2684 -7.2439 3.3108 18 6 2.0881 -6.3175 3.9753 19 7 3.5051 -0.7219 1.2488 20 6 4.1903 0.3527 1.7496 21 1 3.6507 1.2004 2.1453 22 6 5.5783 0.3524 1.7488 23 7 6.2359 -0.6806 1.2662 24 14 6.5131 1.8186 2.4315 25 1 5.5487 2.8417 2.9092 26 1 7.3674 1.3776 3.5633 27 1 7.3663 2.4018 1.3652 28 1 -0.3633 0.5137 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 3.1300 1.4424 -0.0005 33 1 1.6766 1.9564 -0.8899 34 1 1.6767 1.9562 0.8901 35 1 1.8184 -2.6511 0.3176 36 1 0.4437 -2.1651 1.3387 37 1 2.7234 -2.4353 2.9842 38 1 3.2078 -8.3641 6.4575 39 1 1.7654 -9.9425 5.2641 40 1 0.5245 -9.2236 3.2677 41 1 0.7198 -6.9455 2.4297 42 1 3.9897 -1.4834 0.8936 43 1 7.2059 -0.6806 1.2653 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732558256.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:11:34 Heat of formation + Delta-G solvation = 3.069110 kcal Electronic energy + Delta-G solvation = -25863.184147 eV Core-core repulsion = 22226.927849 eV Total energy + Delta-G solvation = -3636.256298 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.67485 -40.21705 -38.77059 -37.90735 -35.36225 -34.93505 -32.23747 -32.08953 -31.60998 -29.91523 -27.61241 -27.06745 -25.45813 -24.11027 -23.66813 -22.80495 -21.54672 -20.73937 -19.73404 -19.27712 -18.47392 -17.57884 -17.05279 -16.78419 -16.60510 -16.19287 -15.90178 -15.76681 -15.39006 -15.27679 -14.98484 -14.93080 -14.69446 -14.24911 -13.82025 -13.44824 -13.34004 -13.11286 -12.92093 -12.90297 -12.73874 -12.70193 -12.49619 -12.35417 -12.28835 -11.98563 -11.78765 -11.71187 -11.47005 -11.30847 -11.08818 -10.87087 -10.83863 -10.14920 -10.08696 -8.98586 -8.93849 -7.89849 -5.17165 -0.75728 0.06226 0.28729 0.57587 0.64991 1.46192 1.47598 1.55950 1.95346 2.07847 2.57139 2.66789 3.22760 3.43365 3.57990 3.82178 3.87348 3.91800 4.08558 4.27813 4.29247 4.33974 4.41702 4.42214 4.53147 4.61090 4.72055 4.83583 4.91707 4.95966 4.98443 5.03614 5.14667 5.17358 5.24569 5.28451 5.37011 5.43423 5.50124 5.57482 5.64013 5.76884 5.86041 6.29946 6.40459 6.98375 7.37589 8.08698 8.33554 9.33397 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.012653 B = 0.003454 C = 0.002828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2212.375734 B = 8105.395010 C = 9899.045527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.104 4.104 3 C -0.135 4.135 4 C 0.171 3.829 5 H 0.053 0.947 6 C 0.120 3.880 7 N -0.694 5.694 8 C 0.581 3.419 9 O -0.556 6.556 10 C 0.066 3.934 11 N -0.514 5.514 12 S 0.421 5.579 13 C -0.212 4.212 14 C -0.073 4.073 15 C -0.078 4.078 16 C -0.109 4.109 17 C -0.068 4.068 18 C -0.113 4.113 19 N -0.728 5.728 20 C -0.214 4.214 21 H 0.079 0.921 22 C -0.073 4.073 23 N -0.968 5.968 24 Si 0.959 3.041 25 H -0.265 1.265 26 H -0.300 1.300 27 H -0.299 1.299 28 H 0.058 0.942 29 H 0.063 0.937 30 H 0.060 0.940 31 H 0.053 0.947 32 H 0.048 0.952 33 H 0.053 0.947 34 H 0.045 0.955 35 H 0.057 0.943 36 H 0.090 0.910 37 H 0.412 0.588 38 H 0.167 0.833 39 H 0.178 0.822 40 H 0.164 0.836 41 H 0.132 0.868 42 H 0.371 0.629 43 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.201 -15.759 8.702 21.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.126 4.126 3 C -0.192 4.192 4 C 0.063 3.937 5 H 0.071 0.929 6 C -0.004 4.004 7 N -0.344 5.344 8 C 0.363 3.637 9 O -0.435 6.435 10 C -0.121 4.121 11 N -0.342 5.342 12 S 0.581 5.419 13 C -0.333 4.333 14 C -0.095 4.095 15 C -0.101 4.101 16 C -0.128 4.128 17 C -0.090 4.090 18 C -0.124 4.124 19 N -0.368 5.368 20 C -0.345 4.345 21 H 0.097 0.903 22 C -0.265 4.265 23 N -0.620 5.620 24 Si 0.790 3.210 25 H -0.189 1.189 26 H -0.228 1.228 27 H -0.227 1.227 28 H 0.077 0.923 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.071 0.929 32 H 0.067 0.933 33 H 0.072 0.928 34 H 0.064 0.936 35 H 0.076 0.924 36 H 0.108 0.892 37 H 0.249 0.751 38 H 0.184 0.816 39 H 0.195 0.805 40 H 0.181 0.819 41 H 0.150 0.850 42 H 0.203 0.797 43 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -11.319 -14.513 9.468 20.698 hybrid contribution 0.474 0.365 -1.034 1.195 sum -10.845 -14.148 8.435 19.721 Atomic orbital electron populations 1.21858 0.93745 1.02029 1.02228 1.21603 0.96041 0.96760 0.98173 1.21733 1.01673 0.95490 1.00325 1.20709 0.83944 0.92125 0.96970 0.92858 1.21799 0.98374 0.92163 0.88056 1.45926 1.47483 1.10391 1.30599 1.17418 0.80992 0.81924 0.83384 1.90697 1.37415 1.68227 1.47193 1.21948 0.99575 0.92919 0.97659 1.71283 1.16042 1.36630 1.10216 1.81086 1.43035 0.91821 1.25987 1.24580 1.04859 1.02976 1.00921 1.20460 0.99487 0.88423 1.01126 1.21588 0.93596 1.01168 0.93739 1.21327 0.99599 0.94916 0.96993 1.20898 0.96051 0.92838 0.99250 1.19752 1.02633 0.91788 0.98195 1.42582 1.00578 1.20135 1.73510 1.19503 0.88849 0.96402 1.29795 0.90285 1.25382 0.97590 0.99972 1.03573 1.69826 1.06282 1.31790 1.54053 0.85272 0.78846 0.79896 0.77016 1.18950 1.22776 1.22670 0.92333 0.91846 0.92118 0.92883 0.93271 0.92808 0.93573 0.92443 0.89163 0.75144 0.81573 0.80475 0.81888 0.85042 0.79731 0.94508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.61 8.84 71.98 0.64 -2.98 16 2 C -0.10 -3.48 2.69 -10.80 -0.03 -3.51 16 3 C -0.13 -4.75 8.26 71.98 0.59 -4.15 16 4 C 0.17 6.46 2.18 44.99 0.10 6.55 16 5 H 0.05 2.04 8.08 -2.38 -0.02 2.02 16 6 C 0.12 4.22 4.73 86.38 0.41 4.63 16 7 N -0.69 -26.37 5.38 -466.41 -2.51 -28.88 16 8 C 0.58 22.05 7.81 86.65 0.68 22.73 16 9 O -0.56 -21.94 15.01 -4.08 -0.06 -22.00 16 10 C 0.07 2.32 6.82 43.86 0.30 2.61 16 11 N -0.51 -17.82 10.49 -64.53 -0.68 -18.50 16 12 S 0.42 10.84 23.36 -56.49 -1.32 9.52 16 13 C -0.21 -5.04 6.73 22.97 0.15 -4.88 16 14 C -0.07 -1.12 10.03 22.04 0.22 -0.90 16 15 C -0.08 -0.93 10.00 22.09 0.22 -0.71 16 16 C -0.11 -1.72 9.93 21.98 0.22 -1.51 16 17 C -0.07 -1.69 9.57 22.36 0.21 -1.47 16 18 C -0.11 -3.34 6.10 -20.17 -0.12 -3.46 16 19 N -0.73 -34.81 4.44 -322.96 -1.43 -36.24 16 20 C -0.21 -11.19 7.57 84.03 0.64 -10.56 16 21 H 0.08 4.00 7.40 -2.91 -0.02 3.97 16 22 C -0.07 -4.11 5.50 84.86 0.47 -3.64 16 23 N -0.97 -58.89 13.06 21.65 0.28 -58.60 16 24 Si 0.96 45.98 29.55 68.60 2.03 48.01 16 25 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 26 H -0.30 -14.63 7.11 99.48 0.71 -13.92 16 27 H -0.30 -14.53 7.11 99.48 0.71 -13.83 16 28 H 0.06 1.42 8.14 -2.38 -0.02 1.40 16 29 H 0.06 1.44 8.14 -2.39 -0.02 1.43 16 30 H 0.06 1.46 6.54 -2.38 -0.02 1.44 16 31 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 32 H 0.05 2.10 6.01 -2.39 -0.01 2.09 16 33 H 0.05 1.63 8.14 -2.39 -0.02 1.62 16 34 H 0.05 1.55 8.14 -2.38 -0.02 1.53 16 35 H 0.06 2.13 8.14 -2.38 -0.02 2.12 16 36 H 0.09 2.81 6.71 -2.39 -0.02 2.79 16 37 H 0.41 16.93 7.58 -92.71 -0.70 16.22 16 38 H 0.17 1.39 8.06 -2.91 -0.02 1.37 16 39 H 0.18 0.61 8.06 -2.91 -0.02 0.59 16 40 H 0.16 1.51 8.06 -2.91 -0.02 1.48 16 41 H 0.13 3.59 6.64 -2.91 -0.02 3.57 16 42 H 0.37 19.84 7.80 -92.71 -0.72 19.11 16 43 H 0.25 14.73 8.31 -92.71 -0.77 13.96 16 Total: -1.00 -68.90 367.46 0.63 -68.27 By element: Atomic # 1 Polarization: 40.03 SS G_CDS: -0.37 Total: 39.66 kcal Atomic # 6 Polarization: -5.93 SS G_CDS: 4.69 Total: -1.24 kcal Atomic # 7 Polarization: -137.88 SS G_CDS: -4.34 Total: -142.22 kcal Atomic # 8 Polarization: -21.94 SS G_CDS: -0.06 Total: -22.00 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 2.03 Total: 48.01 kcal Atomic # 16 Polarization: 10.84 SS G_CDS: -1.32 Total: 9.52 kcal Total: -68.90 0.63 -68.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732558256.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.338 kcal (2) G-P(sol) polarization free energy of solvation -68.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.269 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds