Wall clock time and date at job start Tue Mar 31 2020 17:11:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.46853 * 2 1 4 4 C 1.52991 * 109.47108 * 120.00554 * 2 1 3 5 5 H 1.09001 * 109.47301 * 59.99784 * 4 2 1 6 6 C 1.52998 * 109.47142 * 299.99726 * 4 2 1 7 7 N 1.46500 * 109.47450 * 185.00170 * 6 4 2 8 8 C 1.34776 * 120.00191 * 180.02562 * 7 6 4 9 9 O 1.21616 * 119.99909 * 359.97438 * 8 7 6 10 10 C 1.47378 * 119.99885 * 180.02562 * 8 7 6 11 11 N 1.29688 * 121.83186 * 359.96716 * 10 8 7 12 12 S 1.56004 * 111.74434 * 180.02562 * 11 10 8 13 13 C 1.76256 * 97.56172 * 0.02562 * 12 11 10 14 14 C 1.38696 * 134.18687 * 180.02562 * 13 12 11 15 15 C 1.36799 * 119.63128 * 179.97438 * 14 13 12 16 16 C 1.38904 * 120.30346 * 359.75859 * 15 14 13 17 17 C 1.36329 * 121.04102 * 0.50985 * 16 15 14 18 18 C 1.40417 * 119.95607 * 359.47185 * 17 16 15 19 19 N 1.46500 * 109.47152 * 180.02562 * 4 2 1 20 20 C 1.36937 * 119.99728 * 274.99872 * 19 4 2 21 21 H 1.08001 * 120.00342 * 359.97438 * 20 19 4 22 22 C 1.38816 * 120.00293 * 180.02562 * 20 19 4 23 23 N 1.31625 * 119.99462 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 120.00353 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.47254 * 90.00090 * 24 22 20 26 26 H 1.48501 * 109.46997 * 209.99561 * 24 22 20 27 27 H 1.48494 * 109.47026 * 329.99697 * 24 22 20 28 28 H 1.09005 * 109.46942 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.47321 * 299.99659 * 1 2 3 30 30 H 1.09003 * 109.47084 * 59.99906 * 1 2 3 31 31 H 1.09004 * 109.47038 * 240.00756 * 2 1 3 32 32 H 1.09007 * 109.46913 * 179.97438 * 3 2 1 33 33 H 1.08991 * 109.47582 * 300.00245 * 3 2 1 34 34 H 1.09004 * 109.47159 * 60.00771 * 3 2 1 35 35 H 1.09006 * 109.46884 * 65.00368 * 6 4 2 36 36 H 1.08998 * 109.47195 * 305.00377 * 6 4 2 37 37 H 0.97001 * 120.00072 * 359.97438 * 7 6 4 38 38 H 1.08002 * 120.17887 * 359.97438 * 14 13 12 39 39 H 1.08000 * 119.85002 * 179.97438 * 15 14 13 40 40 H 1.08010 * 119.48284 * 180.28520 * 16 15 14 41 41 H 1.08002 * 120.02552 * 179.75583 * 17 16 15 42 42 H 0.96998 * 120.00139 * 94.99961 * 19 4 2 43 43 H 0.97006 * 119.99666 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7213 1.2491 5 1 1.6766 -1.7490 1.2490 6 6 1.5300 -0.0002 2.4984 7 7 2.1141 -0.6178 3.6915 8 6 1.8053 -0.1447 4.9151 9 8 1.0420 0.7952 5.0288 10 6 2.3934 -0.7658 6.1153 11 7 3.2113 -1.7690 6.0353 12 16 3.6885 -2.2394 7.4441 13 6 2.7858 -1.0647 8.3990 14 6 2.6655 -0.8105 9.7572 15 6 1.8582 0.2071 10.1860 16 6 1.1654 0.9864 9.2682 17 6 1.2648 0.7508 7.9291 18 6 2.0861 -0.2865 7.4588 19 7 3.5049 -0.7208 1.2494 20 6 4.1901 -1.6919 0.5691 21 1 3.6505 -2.4584 0.0327 22 6 5.5782 -1.6918 0.5698 23 7 6.2359 -0.7579 1.2240 24 14 6.5128 -3.0168 -0.3576 25 1 6.7610 -2.5649 -1.7503 26 1 7.8101 -3.2727 0.3183 27 1 5.7105 -4.2662 -0.3781 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5137 -0.8901 32 1 3.1300 1.4425 0.0005 33 1 1.6766 1.9563 -0.8899 34 1 1.6766 1.9563 0.8901 35 1 0.4436 -0.0771 2.5443 36 1 1.8183 1.0501 2.4548 37 1 2.7227 -1.3678 3.6009 38 1 3.2064 -1.4128 10.4722 39 1 1.7616 0.4079 11.2427 40 1 0.5353 1.7895 9.6212 41 1 0.7158 1.3644 7.2302 42 1 3.9896 -0.0326 1.7315 43 1 7.2059 -0.7576 1.2241 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732558257.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:11:49 Heat of formation + Delta-G solvation = 23.135280 kcal Electronic energy + Delta-G solvation = -25930.474718 eV Core-core repulsion = 22295.088555 eV Total energy + Delta-G solvation = -3635.386163 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.56091 -39.02962 -37.39358 -36.78786 -33.78738 -33.22184 -31.26998 -30.75305 -30.34254 -27.92300 -26.62924 -25.68911 -23.81120 -23.17749 -22.60903 -22.02277 -20.13311 -18.78400 -18.63674 -17.47403 -17.10519 -16.53606 -15.76394 -15.54480 -15.37674 -14.92112 -14.75136 -14.32336 -14.10254 -13.94226 -13.57628 -13.50001 -13.18387 -12.88092 -12.67220 -12.38895 -12.29426 -12.03411 -11.88324 -11.44767 -11.21264 -11.14188 -10.97376 -10.86256 -10.78814 -10.61610 -10.35112 -10.18504 -9.94764 -9.83553 -9.67394 -9.65707 -9.22534 -8.92329 -8.67563 -7.97061 -7.01119 -5.79682 -3.09558 0.28797 0.93354 1.24234 1.57412 1.73183 3.19300 3.38038 3.41823 3.47081 3.48332 3.59021 4.23419 4.54639 4.56959 4.73007 4.99957 5.11025 5.27356 5.30021 5.35873 5.39281 5.51515 5.64331 5.73669 5.74888 5.81301 5.84723 5.96959 5.98145 6.09770 6.16441 6.20356 6.30626 6.33829 6.38306 6.44572 6.61192 6.62850 6.74006 6.85065 7.03097 7.06274 7.67674 7.87197 8.37093 8.42508 9.49540 10.03729 10.39381 11.42084 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.011907 B = 0.003570 C = 0.002888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2350.968620 B = 7840.734890 C = 9693.296120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.110 4.110 3 C -0.141 4.141 4 C 0.170 3.830 5 H 0.053 0.947 6 C 0.109 3.891 7 N -0.688 5.688 8 C 0.584 3.416 9 O -0.541 6.541 10 C 0.092 3.908 11 N -0.475 5.475 12 S 0.388 5.612 13 C -0.204 4.204 14 C -0.074 4.074 15 C -0.093 4.093 16 C -0.123 4.123 17 C -0.041 4.041 18 C -0.086 4.086 19 N -0.719 5.719 20 C -0.242 4.242 21 H 0.070 0.930 22 C -0.008 4.008 23 N -0.928 5.928 24 Si 0.905 3.095 25 H -0.291 1.291 26 H -0.292 1.292 27 H -0.282 1.282 28 H 0.049 0.951 29 H 0.052 0.948 30 H 0.046 0.954 31 H 0.073 0.927 32 H 0.068 0.932 33 H 0.039 0.961 34 H 0.045 0.955 35 H 0.069 0.931 36 H 0.072 0.928 37 H 0.419 0.581 38 H 0.133 0.867 39 H 0.133 0.867 40 H 0.132 0.868 41 H 0.148 0.852 42 H 0.386 0.614 43 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.551 1.146 16.099 19.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.132 4.132 3 C -0.198 4.198 4 C 0.059 3.941 5 H 0.071 0.929 6 C -0.015 4.015 7 N -0.340 5.340 8 C 0.365 3.635 9 O -0.419 6.419 10 C -0.097 4.097 11 N -0.300 5.300 12 S 0.547 5.453 13 C -0.325 4.325 14 C -0.096 4.096 15 C -0.116 4.116 16 C -0.142 4.142 17 C -0.063 4.063 18 C -0.097 4.097 19 N -0.361 5.361 20 C -0.373 4.373 21 H 0.088 0.912 22 C -0.205 4.205 23 N -0.576 5.576 24 Si 0.736 3.264 25 H -0.218 1.218 26 H -0.219 1.219 27 H -0.208 1.208 28 H 0.068 0.932 29 H 0.071 0.929 30 H 0.065 0.935 31 H 0.091 0.909 32 H 0.087 0.913 33 H 0.058 0.942 34 H 0.064 0.936 35 H 0.087 0.913 36 H 0.090 0.910 37 H 0.257 0.743 38 H 0.151 0.849 39 H 0.150 0.850 40 H 0.150 0.850 41 H 0.165 0.835 42 H 0.220 0.780 43 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -9.593 -0.121 15.433 18.172 hybrid contribution 0.053 0.563 -0.364 0.673 sum -9.539 0.442 15.069 17.840 Atomic orbital electron populations 1.21929 0.96741 1.00985 1.01030 1.21715 0.93572 0.97174 1.00750 1.21773 1.02662 0.95589 0.99797 1.20510 0.86494 0.96696 0.90387 0.92860 1.21937 0.97394 0.98121 0.84068 1.45904 1.47397 1.36018 1.04634 1.17114 0.81290 0.82977 0.82141 1.90730 1.36725 1.28216 1.86210 1.21979 0.98421 0.94822 0.94459 1.71516 1.15404 1.16317 1.26794 1.81475 1.43913 1.31701 0.88217 1.24371 1.04919 1.03976 0.99246 1.19914 0.99533 0.98545 0.91647 1.21044 0.95810 0.94665 1.00061 1.20897 1.00348 1.00263 0.92735 1.20844 0.95130 0.94384 0.95941 1.19630 1.00922 0.99177 0.89935 1.42438 0.98667 1.33522 1.61429 1.19193 0.88923 1.04641 1.24516 0.91163 1.24719 0.96422 0.98639 1.00697 1.69668 1.06878 1.34906 1.46159 0.86235 0.79524 0.81361 0.79303 1.21796 1.21866 1.20790 0.93219 0.92911 0.93495 0.90883 0.91325 0.94223 0.93560 0.91251 0.90961 0.74296 0.84948 0.84959 0.85020 0.83459 0.78019 0.93521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.07 8.84 37.16 0.33 -1.74 16 2 C -0.11 -1.88 2.91 -90.63 -0.26 -2.14 16 3 C -0.14 -2.40 8.69 37.16 0.32 -2.08 16 4 C 0.17 3.20 2.27 -67.94 -0.15 3.05 16 5 H 0.05 1.03 8.08 -51.93 -0.42 0.61 16 6 C 0.11 1.89 4.51 -4.04 -0.02 1.87 16 7 N -0.69 -12.59 5.38 -61.40 -0.33 -12.92 16 8 C 0.58 10.58 7.81 -12.54 -0.10 10.49 16 9 O -0.54 -10.25 15.01 5.26 0.08 -10.17 16 10 C 0.09 1.53 6.82 -81.98 -0.56 0.97 16 11 N -0.47 -7.89 10.49 28.25 0.30 -7.60 16 12 S 0.39 5.01 23.36 -107.50 -2.51 2.49 16 13 C -0.20 -2.55 6.73 -38.49 -0.26 -2.80 16 14 C -0.07 -0.70 10.03 -39.93 -0.40 -1.10 16 15 C -0.09 -0.77 10.00 -39.86 -0.40 -1.17 16 16 C -0.12 -1.16 9.93 -40.02 -0.40 -1.55 16 17 C -0.04 -0.52 9.57 -39.45 -0.38 -0.89 16 18 C -0.09 -1.25 6.10 -105.09 -0.64 -1.89 16 19 N -0.72 -16.86 3.79 -53.43 -0.20 -17.06 16 20 C -0.24 -6.37 9.93 -15.06 -0.15 -6.52 16 21 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 22 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 23 N -0.93 -27.34 13.06 55.49 0.72 -26.62 16 24 Si 0.90 22.05 29.55 -169.99 -5.02 17.03 16 25 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 26 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 27 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 28 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.05 0.70 6.54 -51.93 -0.34 0.36 16 30 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.07 1.38 8.14 -51.93 -0.42 0.95 16 32 H 0.07 1.37 7.60 -51.92 -0.39 0.98 16 33 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.05 0.74 6.32 -51.93 -0.33 0.41 16 35 H 0.07 1.11 6.71 -51.93 -0.35 0.76 16 36 H 0.07 1.31 6.17 -51.93 -0.32 0.99 16 37 H 0.42 8.22 7.58 -40.82 -0.31 7.91 16 38 H 0.13 0.88 8.06 -52.49 -0.42 0.45 16 39 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 40 H 0.13 0.88 8.06 -52.48 -0.42 0.45 16 41 H 0.15 1.93 6.64 -52.49 -0.35 1.58 16 42 H 0.39 9.89 7.80 -40.82 -0.32 9.57 16 43 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 367.94 15.07 5.54 5.54 Total: -1.00 -30.49 367.94 -10.22 -40.71 By element: Atomic # 1 Polarization: 20.06 SS G_CDS: -5.63 Total: 14.43 kcal Atomic # 6 Polarization: -2.68 SS G_CDS: -3.16 Total: -5.84 kcal Atomic # 7 Polarization: -64.68 SS G_CDS: 0.49 Total: -64.19 kcal Atomic # 8 Polarization: -10.25 SS G_CDS: 0.08 Total: -10.17 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Atomic # 16 Polarization: 5.01 SS G_CDS: -2.51 Total: 2.49 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -30.49 -10.22 -40.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732558257.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.845 kcal (2) G-P(sol) polarization free energy of solvation -30.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.710 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds