Wall clock time and date at job start Tue Mar 31 2020 17:11:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.46853 * 2 1 4 4 C 1.52991 * 109.47108 * 120.00554 * 2 1 3 5 5 H 1.09001 * 109.47301 * 59.99784 * 4 2 1 6 6 C 1.52998 * 109.47142 * 299.99726 * 4 2 1 7 7 N 1.46500 * 109.47450 * 185.00170 * 6 4 2 8 8 C 1.34776 * 120.00191 * 180.02562 * 7 6 4 9 9 O 1.21616 * 119.99909 * 359.97438 * 8 7 6 10 10 C 1.47378 * 119.99885 * 180.02562 * 8 7 6 11 11 N 1.29688 * 121.83186 * 359.96716 * 10 8 7 12 12 S 1.56004 * 111.74434 * 180.02562 * 11 10 8 13 13 C 1.76256 * 97.56172 * 0.02562 * 12 11 10 14 14 C 1.38696 * 134.18687 * 180.02562 * 13 12 11 15 15 C 1.36799 * 119.63128 * 179.97438 * 14 13 12 16 16 C 1.38904 * 120.30346 * 359.75859 * 15 14 13 17 17 C 1.36329 * 121.04102 * 0.50985 * 16 15 14 18 18 C 1.40417 * 119.95607 * 359.47185 * 17 16 15 19 19 N 1.46500 * 109.47152 * 180.02562 * 4 2 1 20 20 C 1.36937 * 119.99728 * 274.99872 * 19 4 2 21 21 H 1.08001 * 120.00342 * 359.97438 * 20 19 4 22 22 C 1.38816 * 120.00293 * 180.02562 * 20 19 4 23 23 N 1.31625 * 119.99462 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 120.00353 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.47254 * 90.00090 * 24 22 20 26 26 H 1.48501 * 109.46997 * 209.99561 * 24 22 20 27 27 H 1.48494 * 109.47026 * 329.99697 * 24 22 20 28 28 H 1.09005 * 109.46942 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.47321 * 299.99659 * 1 2 3 30 30 H 1.09003 * 109.47084 * 59.99906 * 1 2 3 31 31 H 1.09004 * 109.47038 * 240.00756 * 2 1 3 32 32 H 1.09007 * 109.46913 * 179.97438 * 3 2 1 33 33 H 1.08991 * 109.47582 * 300.00245 * 3 2 1 34 34 H 1.09004 * 109.47159 * 60.00771 * 3 2 1 35 35 H 1.09006 * 109.46884 * 65.00368 * 6 4 2 36 36 H 1.08998 * 109.47195 * 305.00377 * 6 4 2 37 37 H 0.97001 * 120.00072 * 359.97438 * 7 6 4 38 38 H 1.08002 * 120.17887 * 359.97438 * 14 13 12 39 39 H 1.08000 * 119.85002 * 179.97438 * 15 14 13 40 40 H 1.08010 * 119.48284 * 180.28520 * 16 15 14 41 41 H 1.08002 * 120.02552 * 179.75583 * 17 16 15 42 42 H 0.96998 * 120.00139 * 94.99961 * 19 4 2 43 43 H 0.97006 * 119.99666 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7213 1.2491 5 1 1.6766 -1.7490 1.2490 6 6 1.5300 -0.0002 2.4984 7 7 2.1141 -0.6178 3.6915 8 6 1.8053 -0.1447 4.9151 9 8 1.0420 0.7952 5.0288 10 6 2.3934 -0.7658 6.1153 11 7 3.2113 -1.7690 6.0353 12 16 3.6885 -2.2394 7.4441 13 6 2.7858 -1.0647 8.3990 14 6 2.6655 -0.8105 9.7572 15 6 1.8582 0.2071 10.1860 16 6 1.1654 0.9864 9.2682 17 6 1.2648 0.7508 7.9291 18 6 2.0861 -0.2865 7.4588 19 7 3.5049 -0.7208 1.2494 20 6 4.1901 -1.6919 0.5691 21 1 3.6505 -2.4584 0.0327 22 6 5.5782 -1.6918 0.5698 23 7 6.2359 -0.7579 1.2240 24 14 6.5128 -3.0168 -0.3576 25 1 6.7610 -2.5649 -1.7503 26 1 7.8101 -3.2727 0.3183 27 1 5.7105 -4.2662 -0.3781 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5137 -0.8901 32 1 3.1300 1.4425 0.0005 33 1 1.6766 1.9563 -0.8899 34 1 1.6766 1.9563 0.8901 35 1 0.4436 -0.0771 2.5443 36 1 1.8183 1.0501 2.4548 37 1 2.7227 -1.3678 3.6009 38 1 3.2064 -1.4128 10.4722 39 1 1.7616 0.4079 11.2427 40 1 0.5353 1.7895 9.6212 41 1 0.7158 1.3644 7.2302 42 1 3.9896 -0.0326 1.7315 43 1 7.2059 -0.7576 1.2241 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732558257.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:11:44 Heat of formation + Delta-G solvation = 4.100856 kcal Electronic energy + Delta-G solvation = -25931.300113 eV Core-core repulsion = 22295.088555 eV Total energy + Delta-G solvation = -3636.211558 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 4.24 seconds Orbital eigenvalues (eV) -41.67852 -40.24643 -38.82739 -37.90386 -35.26274 -35.05645 -32.25348 -32.08850 -31.60790 -29.45084 -27.93597 -27.05285 -25.50315 -24.20671 -23.91794 -23.12340 -21.46832 -20.14241 -19.69555 -19.33312 -18.45340 -17.69611 -17.01839 -16.92941 -16.52870 -16.18860 -15.94278 -15.75558 -15.38950 -15.13894 -14.98649 -14.92567 -14.80696 -14.26383 -13.99576 -13.67211 -13.34344 -13.11176 -12.89845 -12.81040 -12.69948 -12.68307 -12.54992 -12.35872 -12.20269 -12.13250 -11.88246 -11.71085 -11.53232 -11.25326 -11.07783 -10.86989 -10.86088 -10.12758 -10.08320 -8.99728 -8.93728 -7.92226 -5.20367 -0.75632 0.06362 0.28827 0.57719 0.65089 1.46673 1.46914 1.55084 1.95564 2.08436 2.55947 2.66902 3.22839 3.41212 3.57988 3.83483 3.85953 3.93219 4.08694 4.20436 4.31002 4.34082 4.41819 4.43163 4.50667 4.53254 4.67363 4.83576 4.87511 4.91712 4.98491 5.08745 5.13316 5.17542 5.21946 5.26991 5.37021 5.40538 5.48509 5.52631 5.60232 5.66345 5.86164 6.27860 6.40606 6.98524 7.35463 8.07815 8.32418 9.30497 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.011907 B = 0.003570 C = 0.002888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2350.968620 B = 7840.734890 C = 9693.296120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.105 4.105 3 C -0.135 4.135 4 C 0.170 3.830 5 H 0.052 0.948 6 C 0.118 3.882 7 N -0.694 5.694 8 C 0.581 3.419 9 O -0.556 6.556 10 C 0.066 3.934 11 N -0.515 5.515 12 S 0.420 5.580 13 C -0.212 4.212 14 C -0.073 4.073 15 C -0.078 4.078 16 C -0.109 4.109 17 C -0.068 4.068 18 C -0.113 4.113 19 N -0.726 5.726 20 C -0.231 4.231 21 H 0.076 0.924 22 C -0.069 4.069 23 N -0.966 5.966 24 Si 0.965 3.035 25 H -0.291 1.291 26 H -0.300 1.300 27 H -0.270 1.270 28 H 0.058 0.942 29 H 0.061 0.939 30 H 0.064 0.936 31 H 0.054 0.946 32 H 0.031 0.969 33 H 0.060 0.940 34 H 0.055 0.945 35 H 0.089 0.911 36 H 0.064 0.936 37 H 0.411 0.589 38 H 0.167 0.833 39 H 0.178 0.822 40 H 0.164 0.836 41 H 0.132 0.868 42 H 0.372 0.628 43 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.132 0.972 18.355 22.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.126 4.126 3 C -0.192 4.192 4 C 0.061 3.939 5 H 0.070 0.930 6 C -0.006 4.006 7 N -0.345 5.345 8 C 0.363 3.637 9 O -0.435 6.435 10 C -0.121 4.121 11 N -0.342 5.342 12 S 0.580 5.420 13 C -0.333 4.333 14 C -0.095 4.095 15 C -0.101 4.101 16 C -0.128 4.128 17 C -0.090 4.090 18 C -0.124 4.124 19 N -0.366 5.366 20 C -0.363 4.363 21 H 0.094 0.906 22 C -0.262 4.262 23 N -0.617 5.617 24 Si 0.795 3.205 25 H -0.218 1.218 26 H -0.227 1.227 27 H -0.195 1.195 28 H 0.077 0.923 29 H 0.080 0.920 30 H 0.083 0.917 31 H 0.072 0.928 32 H 0.050 0.950 33 H 0.079 0.921 34 H 0.073 0.927 35 H 0.107 0.893 36 H 0.082 0.918 37 H 0.248 0.752 38 H 0.184 0.816 39 H 0.195 0.805 40 H 0.181 0.819 41 H 0.150 0.850 42 H 0.204 0.796 43 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -11.236 -0.307 17.674 20.945 hybrid contribution 0.457 0.646 -0.901 1.200 sum -10.779 0.339 16.773 19.940 Atomic orbital electron populations 1.21847 0.93588 1.02047 1.02356 1.21583 0.96120 0.96480 0.98446 1.21700 1.00196 0.96017 1.01275 1.20680 0.83961 0.97158 0.92077 0.93014 1.21862 0.98275 0.97233 0.83202 1.45943 1.47480 1.35901 1.05132 1.17416 0.81007 0.82763 0.82548 1.90695 1.37414 1.28797 1.86574 1.21953 0.99559 0.95723 0.94866 1.71284 1.16099 1.16947 1.29876 1.81082 1.42975 1.31084 0.86810 1.24580 1.04842 1.03572 1.00336 1.20459 0.99450 0.98992 0.90595 1.21588 0.93618 0.92875 1.02007 1.21327 0.99630 1.00503 0.91374 1.20899 0.96045 0.94639 0.97439 1.19752 1.02596 1.00709 0.89308 1.42520 1.00537 1.32537 1.60963 1.19532 0.89210 1.04528 1.23056 0.90636 1.25419 0.97473 1.00869 1.02431 1.69827 1.06411 1.36987 1.48437 0.85263 0.77925 0.79521 0.77780 1.21810 1.22726 1.19519 0.92340 0.92016 0.91739 0.92766 0.95008 0.92148 0.92650 0.89295 0.91823 0.75212 0.81576 0.80475 0.81883 0.85025 0.79582 0.94361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.61 8.84 71.98 0.64 -2.97 16 2 C -0.10 -3.53 2.91 -10.80 -0.03 -3.56 16 3 C -0.13 -4.57 8.69 71.98 0.63 -3.95 16 4 C 0.17 6.50 2.27 44.99 0.10 6.60 16 5 H 0.05 2.00 8.08 -2.39 -0.02 1.99 16 6 C 0.12 4.17 4.51 86.38 0.39 4.56 16 7 N -0.69 -26.57 5.38 -466.41 -2.51 -29.08 16 8 C 0.58 22.10 7.81 86.65 0.68 22.78 16 9 O -0.56 -21.90 15.01 -4.08 -0.06 -21.96 16 10 C 0.07 2.32 6.82 43.86 0.30 2.62 16 11 N -0.51 -17.89 10.49 -64.53 -0.68 -18.57 16 12 S 0.42 10.85 23.36 -56.49 -1.32 9.53 16 13 C -0.21 -5.04 6.73 22.97 0.15 -4.89 16 14 C -0.07 -1.12 10.03 22.04 0.22 -0.90 16 15 C -0.08 -0.93 10.00 22.09 0.22 -0.71 16 16 C -0.11 -1.72 9.93 21.98 0.22 -1.50 16 17 C -0.07 -1.68 9.57 22.36 0.21 -1.47 16 18 C -0.11 -3.34 6.10 -20.17 -0.12 -3.46 16 19 N -0.73 -35.18 3.79 -322.95 -1.23 -36.41 16 20 C -0.23 -12.45 9.93 84.03 0.83 -11.62 16 21 H 0.08 3.92 7.83 -2.91 -0.02 3.90 16 22 C -0.07 -3.94 5.50 84.86 0.47 -3.47 16 23 N -0.97 -59.00 13.06 21.65 0.28 -58.72 16 24 Si 0.96 46.29 29.55 68.60 2.03 48.32 16 25 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 26 H -0.30 -14.68 7.11 99.48 0.71 -13.98 16 27 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 28 H 0.06 1.41 8.14 -2.38 -0.02 1.39 16 29 H 0.06 1.49 6.54 -2.39 -0.02 1.47 16 30 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.05 2.03 8.14 -2.38 -0.02 2.01 16 32 H 0.03 1.30 7.60 -2.38 -0.02 1.28 16 33 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.05 1.76 6.32 -2.38 -0.02 1.74 16 35 H 0.09 2.80 6.71 -2.38 -0.02 2.78 16 36 H 0.06 2.37 6.17 -2.39 -0.01 2.35 16 37 H 0.41 17.06 7.58 -92.71 -0.70 16.36 16 38 H 0.17 1.39 8.06 -2.91 -0.02 1.37 16 39 H 0.18 0.61 8.06 -2.91 -0.02 0.59 16 40 H 0.16 1.50 8.06 -2.91 -0.02 1.48 16 41 H 0.13 3.58 6.64 -2.91 -0.02 3.56 16 42 H 0.37 20.03 7.80 -92.71 -0.72 19.30 16 43 H 0.25 14.86 8.31 -92.70 -0.77 14.09 16 Total: -1.00 -69.67 367.94 1.06 -68.62 By element: Atomic # 1 Polarization: 40.58 SS G_CDS: -0.36 Total: 40.21 kcal Atomic # 6 Polarization: -6.84 SS G_CDS: 4.90 Total: -1.94 kcal Atomic # 7 Polarization: -138.65 SS G_CDS: -4.13 Total: -142.78 kcal Atomic # 8 Polarization: -21.90 SS G_CDS: -0.06 Total: -21.96 kcal Atomic # 14 Polarization: 46.29 SS G_CDS: 2.03 Total: 48.32 kcal Atomic # 16 Polarization: 10.85 SS G_CDS: -1.32 Total: 9.53 kcal Total: -69.67 1.06 -68.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732558257.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.718 kcal (2) G-P(sol) polarization free energy of solvation -69.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.617 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.24 seconds