Wall clock time and date at job start Tue Mar 31 2020 18:43:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.47145 * 2 1 4 4 C 1.53006 * 109.47065 * 240.00872 * 2 1 3 5 5 N 1.46898 * 109.47206 * 184.99822 * 4 2 1 6 6 C 1.46898 * 110.99995 * 179.97438 * 5 4 2 7 7 C 1.50707 * 109.47178 * 180.02562 * 6 5 4 8 8 C 1.38357 * 119.84588 * 269.72655 * 7 6 5 9 9 C 1.37947 * 120.15322 * 179.76299 * 8 7 6 10 10 C 1.39639 * 119.84191 * 0.53160 * 9 8 7 11 11 C 1.43195 * 120.15239 * 179.70023 * 10 9 8 12 12 N 9.71194 * 163.64717 * 225.36318 * 2 1 3 13 13 C 1.39636 * 119.69710 * 359.71957 * 10 9 8 14 14 C 1.37942 * 119.84869 * 0.02562 * 13 10 9 15 15 N 1.46497 * 109.47313 * 120.00897 * 2 1 3 16 16 C 1.34777 * 119.99525 * 274.99614 * 15 2 1 17 17 O 1.21283 * 120.00463 * 0.02562 * 16 15 2 18 18 C 1.50700 * 119.99675 * 179.72583 * 16 15 2 19 19 S 1.80997 * 109.47151 * 180.27780 * 18 16 15 20 20 C 1.76196 * 100.00314 * 179.97438 * 19 18 16 21 21 H 1.08005 * 120.00018 * 0.02562 * 20 19 18 22 22 C 1.38799 * 120.00626 * 179.97438 * 20 19 18 23 23 N 1.31628 * 120.00336 * 180.02562 * 22 20 19 24 24 Si 1.86804 * 119.99494 * 0.02562 * 22 20 19 25 25 H 1.48497 * 109.47141 * 90.00156 * 24 22 20 26 26 H 1.48505 * 109.47177 * 209.99950 * 24 22 20 27 27 H 1.48496 * 109.47259 * 329.99923 * 24 22 20 28 28 H 1.09002 * 109.46839 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46617 * 299.99415 * 1 2 3 30 30 H 1.09003 * 109.47371 * 59.99288 * 1 2 3 31 31 H 1.08997 * 109.46872 * 304.99946 * 4 2 1 32 32 H 1.08994 * 109.47319 * 64.99922 * 4 2 1 33 33 H 1.00901 * 111.00043 * 56.04169 * 5 4 2 34 34 H 1.09002 * 109.47134 * 300.00065 * 6 5 4 35 35 H 1.08996 * 109.47008 * 60.00256 * 6 5 4 36 36 H 1.08008 * 119.92459 * 359.97438 * 8 7 6 37 37 H 1.07992 * 120.08040 * 180.25249 * 9 8 7 38 38 H 1.07998 * 120.07489 * 179.97438 * 13 10 9 39 39 H 1.08003 * 119.92558 * 179.97438 * 14 13 10 40 40 H 0.97000 * 120.00580 * 95.00360 * 15 2 1 41 41 H 1.09009 * 109.47352 * 300.27556 * 18 16 15 42 42 H 1.08998 * 109.47585 * 60.27844 * 18 16 15 43 43 H 0.97003 * 119.99714 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2494 5 7 3.5040 -0.8265 -1.1906 6 6 4.0302 -1.5155 -2.3765 7 6 5.5316 -1.6051 -2.2805 8 6 6.3168 -0.5961 -2.8094 9 6 7.6914 -0.6693 -2.7208 10 6 8.2905 -1.7703 -2.1054 11 6 9.7170 -1.8561 -2.0155 12 7 10.8491 -1.9212 -1.9457 13 6 7.4921 -2.7875 -1.5784 14 6 6.1185 -2.6989 -1.6693 15 7 2.0184 -0.6908 1.1960 16 6 2.1472 -0.0185 2.3570 17 8 1.8583 1.1582 2.4118 18 6 2.6437 -0.7305 3.5889 19 16 2.6984 0.4307 4.9762 20 6 3.2947 -0.6363 6.2451 21 1 3.5050 -1.6725 6.0248 22 6 3.4953 -0.1451 7.5277 23 7 3.9413 -0.9422 8.4756 24 14 3.1322 1.6473 7.9086 25 1 1.7195 1.7843 8.3449 26 1 4.0327 2.1152 8.9929 27 1 3.3561 2.4673 6.6910 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3632 0.5137 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 1.6054 -1.7196 -1.2954 32 1 1.7517 -0.1581 -2.1370 33 1 3.7996 -1.2882 -0.3436 34 1 3.6094 -2.5196 -2.4299 35 1 3.7557 -0.9584 -3.2721 36 1 5.8522 0.2524 -3.2898 37 1 8.3031 0.1209 -3.1304 38 1 7.9489 -3.6420 -1.1015 39 1 5.4998 -3.4851 -1.2625 40 1 2.2492 -1.6319 1.1524 41 1 1.9698 -1.5528 3.8298 42 1 3.6437 -1.1227 3.4038 43 1 4.0811 -0.5988 9.3720 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732945297.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:43:51 Heat of formation + Delta-G solvation = 12.061416 kcal Electronic energy + Delta-G solvation = -24284.507024 eV Core-core repulsion = 20648.640662 eV Total energy + Delta-G solvation = -3635.866362 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.08412 -39.54615 -37.38028 -36.63903 -34.73516 -32.44269 -32.21052 -31.54575 -31.14129 -28.69494 -27.29364 -25.61448 -24.57143 -23.24257 -22.31375 -21.64511 -20.40680 -19.34302 -17.96483 -16.94436 -16.54115 -16.22833 -15.84612 -15.49954 -15.27057 -14.98894 -14.92338 -14.84104 -14.31820 -14.04049 -13.99577 -13.77573 -13.39894 -13.26401 -13.15584 -12.91453 -12.79412 -12.64744 -12.52576 -12.39506 -12.10373 -11.93101 -11.61734 -11.47775 -11.26272 -11.08989 -11.00766 -10.59465 -9.85542 -9.50580 -9.47632 -9.29498 -9.05320 -8.99094 -8.81618 -8.49831 -6.91480 -6.29083 -4.00607 0.30602 0.90199 2.32524 2.52971 2.76189 2.98217 3.29201 3.33731 3.40250 3.50940 3.51191 3.64542 3.85924 4.28033 4.32981 4.33291 4.44101 4.55624 4.73738 4.80725 4.84771 4.88746 5.04929 5.10180 5.12014 5.18826 5.28359 5.32142 5.32672 5.33898 5.52566 5.55858 5.73221 5.75597 5.85211 5.95762 5.99989 6.06003 6.07189 6.33990 6.50692 6.57454 6.91804 7.13327 7.57690 7.93954 8.41167 8.49918 9.17293 10.80170 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.008971 B = 0.002659 C = 0.002163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3120.346041 B =10528.208009 C =12942.611021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.145 3.855 3 H 0.097 0.903 4 C 0.053 3.947 5 N -0.683 5.683 6 C 0.093 3.907 7 C -0.054 4.054 8 C -0.097 4.097 9 C -0.070 4.070 10 C -0.030 4.030 11 C 0.254 3.746 12 N -0.418 5.418 13 C -0.068 4.068 14 C -0.114 4.114 15 N -0.733 5.733 16 C 0.534 3.466 17 O -0.516 6.516 18 C -0.125 4.125 19 S -0.141 6.141 20 C -0.521 4.521 21 H 0.088 0.912 22 C 0.095 3.905 23 N -0.881 5.881 24 Si 0.856 3.144 25 H -0.267 1.267 26 H -0.274 1.274 27 H -0.235 1.235 28 H 0.055 0.945 29 H 0.067 0.933 30 H 0.064 0.936 31 H 0.037 0.963 32 H 0.088 0.912 33 H 0.347 0.653 34 H 0.044 0.956 35 H 0.086 0.914 36 H 0.135 0.865 37 H 0.133 0.867 38 H 0.133 0.867 39 H 0.132 0.868 40 H 0.394 0.606 41 H 0.095 0.905 42 H 0.096 0.904 43 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.638 -4.571 -27.769 28.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.040 3.960 3 H 0.115 0.885 4 C -0.076 4.076 5 N -0.315 5.315 6 C -0.035 4.035 7 C -0.055 4.055 8 C -0.116 4.116 9 C -0.091 4.091 10 C -0.033 4.033 11 C -0.061 4.061 12 N -0.093 5.093 13 C -0.089 4.089 14 C -0.133 4.133 15 N -0.387 5.387 16 C 0.320 3.680 17 O -0.390 6.390 18 C -0.275 4.275 19 S 0.085 5.915 20 C -0.669 4.669 21 H 0.106 0.894 22 C -0.113 4.113 23 N -0.517 5.517 24 Si 0.681 3.319 25 H -0.192 1.192 26 H -0.200 1.200 27 H -0.159 1.159 28 H 0.074 0.926 29 H 0.086 0.914 30 H 0.083 0.917 31 H 0.055 0.945 32 H 0.106 0.894 33 H 0.167 0.833 34 H 0.062 0.938 35 H 0.104 0.896 36 H 0.153 0.847 37 H 0.151 0.849 38 H 0.151 0.849 39 H 0.150 0.850 40 H 0.227 0.773 41 H 0.113 0.887 42 H 0.115 0.885 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -0.209 -2.090 -27.640 27.720 hybrid contribution -0.279 -2.157 0.618 2.262 sum -0.489 -4.247 -27.022 27.358 Atomic orbital electron populations 1.22168 0.95096 1.02065 1.02927 1.20943 0.93642 0.98401 0.83041 0.88524 1.22305 0.87310 0.99423 0.98601 1.60427 1.09803 1.56642 1.04625 1.20969 0.90001 0.97608 0.94956 1.20034 0.95561 0.93869 0.96079 1.20988 0.92588 0.98474 0.99519 1.21207 0.95189 0.96083 0.96585 1.16026 0.84375 0.97993 1.04940 1.25751 0.92727 0.93870 0.93796 1.81277 1.12088 1.07534 1.08376 1.21168 0.93473 0.97377 0.96851 1.21015 0.94310 0.98420 0.99532 1.46010 1.69411 1.13580 1.09744 1.20225 0.76793 0.87203 0.83759 1.90701 1.48204 1.15724 1.84396 1.23284 1.04443 1.03428 0.96388 1.84802 1.87360 1.16496 1.02792 1.22314 1.50747 0.98666 0.95147 0.89436 1.24715 0.93359 0.98277 0.94977 1.69938 1.43595 1.35792 1.02422 0.86738 0.79297 0.85262 0.80583 1.19233 1.19957 1.15867 0.92624 0.91393 0.91742 0.94523 0.89407 0.83349 0.93832 0.89601 0.84680 0.84902 0.84859 0.85042 0.77285 0.88665 0.88532 0.91946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.47 9.48 37.16 0.35 -1.12 16 2 C 0.14 1.38 2.88 -67.93 -0.20 1.19 16 3 H 0.10 1.19 7.58 -51.93 -0.39 0.80 16 4 C 0.05 0.33 5.30 -3.82 -0.02 0.31 16 5 N -0.68 -4.67 6.48 -115.06 -0.75 -5.42 16 6 C 0.09 0.46 5.81 -4.97 -0.03 0.43 16 7 C -0.05 -0.31 5.40 -104.53 -0.56 -0.88 16 8 C -0.10 -0.57 9.68 -39.64 -0.38 -0.95 16 9 C -0.07 -0.44 9.76 -39.17 -0.38 -0.82 16 10 C -0.03 -0.22 5.73 -106.93 -0.61 -0.83 16 11 C 0.25 2.46 15.33 -22.47 -0.34 2.11 16 12 N -0.42 -5.11 18.54 41.84 0.78 -4.34 16 13 C -0.07 -0.43 9.76 -39.17 -0.38 -0.81 16 14 C -0.11 -0.64 9.68 -39.64 -0.38 -1.02 16 15 N -0.73 -8.09 4.36 -53.80 -0.23 -8.32 16 16 C 0.53 8.85 7.81 -10.98 -0.09 8.76 16 17 O -0.52 -10.65 15.53 5.55 0.09 -10.56 16 18 C -0.12 -2.30 6.16 36.01 0.22 -2.08 16 19 S -0.14 -3.51 18.55 -107.50 -1.99 -5.50 16 20 C -0.52 -14.85 10.04 30.94 0.31 -14.54 16 21 H 0.09 2.60 8.03 -52.48 -0.42 2.17 16 22 C 0.10 2.78 5.50 -17.43 -0.10 2.68 16 23 N -0.88 -26.50 13.97 55.49 0.78 -25.73 16 24 Si 0.86 21.71 27.74 -169.99 -4.72 17.00 16 25 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 26 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 27 H -0.23 -5.94 6.74 56.52 0.38 -5.56 16 28 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.04 0.19 8.14 -51.93 -0.42 -0.23 16 32 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.35 2.54 7.57 -39.29 -0.30 2.24 16 34 H 0.04 0.17 8.08 -51.93 -0.42 -0.25 16 35 H 0.09 0.36 8.08 -51.93 -0.42 -0.06 16 36 H 0.14 0.61 8.06 -52.48 -0.42 0.19 16 37 H 0.13 0.65 8.06 -52.49 -0.42 0.22 16 38 H 0.13 0.68 8.06 -52.49 -0.42 0.26 16 39 H 0.13 0.51 8.06 -52.48 -0.42 0.09 16 40 H 0.39 3.22 8.15 -40.82 -0.33 2.88 16 41 H 0.10 1.63 8.14 -51.91 -0.42 1.21 16 42 H 0.10 1.65 8.14 -51.92 -0.42 1.23 16 43 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 389.45 15.07 5.87 5.87 Total: -1.00 -35.39 389.45 -8.87 -44.26 By element: Atomic # 1 Polarization: 6.42 SS G_CDS: -6.09 Total: 0.32 kcal Atomic # 6 Polarization: -4.99 SS G_CDS: -2.59 Total: -7.58 kcal Atomic # 7 Polarization: -44.37 SS G_CDS: 0.57 Total: -43.80 kcal Atomic # 8 Polarization: -10.65 SS G_CDS: 0.09 Total: -10.56 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -4.72 Total: 17.00 kcal Atomic # 16 Polarization: -3.51 SS G_CDS: -1.99 Total: -5.50 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -35.39 -8.87 -44.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732945297.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.322 kcal (2) G-P(sol) polarization free energy of solvation -35.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.260 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds