Wall clock time and date at job start Tue Mar 31 2020 18:43:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.47145 * 2 1 4 4 C 1.53006 * 109.47065 * 240.00872 * 2 1 3 5 5 N 1.46898 * 109.47206 * 184.99822 * 4 2 1 6 6 C 1.46898 * 110.99995 * 179.97438 * 5 4 2 7 7 C 1.50707 * 109.47178 * 180.02562 * 6 5 4 8 8 C 1.38357 * 119.84588 * 269.72655 * 7 6 5 9 9 C 1.37947 * 120.15322 * 179.76299 * 8 7 6 10 10 C 1.39639 * 119.84191 * 0.53160 * 9 8 7 11 11 C 1.43195 * 120.15239 * 179.70023 * 10 9 8 12 12 N 9.71194 * 163.64717 * 225.36318 * 2 1 3 13 13 C 1.39636 * 119.69710 * 359.71957 * 10 9 8 14 14 C 1.37942 * 119.84869 * 0.02562 * 13 10 9 15 15 N 1.46497 * 109.47313 * 120.00897 * 2 1 3 16 16 C 1.34777 * 119.99525 * 274.99614 * 15 2 1 17 17 O 1.21283 * 120.00463 * 0.02562 * 16 15 2 18 18 C 1.50700 * 119.99675 * 179.72583 * 16 15 2 19 19 S 1.80997 * 109.47151 * 180.27780 * 18 16 15 20 20 C 1.76196 * 100.00314 * 179.97438 * 19 18 16 21 21 H 1.08005 * 120.00018 * 0.02562 * 20 19 18 22 22 C 1.38799 * 120.00626 * 179.97438 * 20 19 18 23 23 N 1.31628 * 120.00336 * 180.02562 * 22 20 19 24 24 Si 1.86804 * 119.99494 * 0.02562 * 22 20 19 25 25 H 1.48497 * 109.47141 * 90.00156 * 24 22 20 26 26 H 1.48505 * 109.47177 * 209.99950 * 24 22 20 27 27 H 1.48496 * 109.47259 * 329.99923 * 24 22 20 28 28 H 1.09002 * 109.46839 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46617 * 299.99415 * 1 2 3 30 30 H 1.09003 * 109.47371 * 59.99288 * 1 2 3 31 31 H 1.08997 * 109.46872 * 304.99946 * 4 2 1 32 32 H 1.08994 * 109.47319 * 64.99922 * 4 2 1 33 33 H 1.00901 * 111.00043 * 56.04169 * 5 4 2 34 34 H 1.09002 * 109.47134 * 300.00065 * 6 5 4 35 35 H 1.08996 * 109.47008 * 60.00256 * 6 5 4 36 36 H 1.08008 * 119.92459 * 359.97438 * 8 7 6 37 37 H 1.07992 * 120.08040 * 180.25249 * 9 8 7 38 38 H 1.07998 * 120.07489 * 179.97438 * 13 10 9 39 39 H 1.08003 * 119.92558 * 179.97438 * 14 13 10 40 40 H 0.97000 * 120.00580 * 95.00360 * 15 2 1 41 41 H 1.09009 * 109.47352 * 300.27556 * 18 16 15 42 42 H 1.08998 * 109.47585 * 60.27844 * 18 16 15 43 43 H 0.97003 * 119.99714 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2494 5 7 3.5040 -0.8265 -1.1906 6 6 4.0302 -1.5155 -2.3765 7 6 5.5316 -1.6051 -2.2805 8 6 6.3168 -0.5961 -2.8094 9 6 7.6914 -0.6693 -2.7208 10 6 8.2905 -1.7703 -2.1054 11 6 9.7170 -1.8561 -2.0155 12 7 10.8491 -1.9212 -1.9457 13 6 7.4921 -2.7875 -1.5784 14 6 6.1185 -2.6989 -1.6693 15 7 2.0184 -0.6908 1.1960 16 6 2.1472 -0.0185 2.3570 17 8 1.8583 1.1582 2.4118 18 6 2.6437 -0.7305 3.5889 19 16 2.6984 0.4307 4.9762 20 6 3.2947 -0.6363 6.2451 21 1 3.5050 -1.6725 6.0248 22 6 3.4953 -0.1451 7.5277 23 7 3.9413 -0.9422 8.4756 24 14 3.1322 1.6473 7.9086 25 1 1.7195 1.7843 8.3449 26 1 4.0327 2.1152 8.9929 27 1 3.3561 2.4673 6.6910 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3632 0.5137 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 1.6054 -1.7196 -1.2954 32 1 1.7517 -0.1581 -2.1370 33 1 3.7996 -1.2882 -0.3436 34 1 3.6094 -2.5196 -2.4299 35 1 3.7557 -0.9584 -3.2721 36 1 5.8522 0.2524 -3.2898 37 1 8.3031 0.1209 -3.1304 38 1 7.9489 -3.6420 -1.1015 39 1 5.4998 -3.4851 -1.2625 40 1 2.2492 -1.6319 1.1524 41 1 1.9698 -1.5528 3.8298 42 1 3.6437 -1.1227 3.4038 43 1 4.0811 -0.5988 9.3720 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732945297.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:43:50 Heat of formation + Delta-G solvation = -12.242482 kcal Electronic energy + Delta-G solvation = -24285.560921 eV Core-core repulsion = 20648.640662 eV Total energy + Delta-G solvation = -3636.920258 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.82021 -40.45288 -38.13372 -37.45926 -35.51218 -34.65722 -33.07204 -31.98893 -31.94018 -29.97970 -27.83672 -27.80625 -25.14640 -23.68431 -22.79579 -22.56135 -21.47440 -19.90337 -19.88074 -18.06185 -17.47663 -17.09913 -16.91124 -16.50172 -16.43771 -15.95409 -15.80446 -15.60602 -15.40930 -15.04880 -14.98513 -14.74889 -14.43372 -14.29617 -14.03847 -13.90395 -13.87954 -13.33551 -13.31403 -13.23518 -13.10828 -13.00108 -12.83330 -12.70664 -12.49641 -12.21877 -11.91290 -11.86106 -11.75299 -11.15841 -10.89723 -10.49887 -10.08058 -9.91684 -9.79403 -9.26130 -8.96578 -8.50451 -6.20124 -0.21918 0.46570 1.02343 1.31887 1.48490 1.57587 1.58633 1.66167 1.89776 2.25201 2.31646 2.74883 2.83342 2.88123 2.89200 3.36331 3.86634 3.88684 3.93675 4.01652 4.03534 4.26182 4.30602 4.39869 4.43678 4.46507 4.51093 4.68428 4.75477 4.77539 4.83129 4.85686 4.93311 5.12359 5.15544 5.28464 5.34371 5.38754 5.59797 5.63418 5.72035 5.90989 6.09192 6.12860 6.40642 6.42772 6.54574 6.95362 7.29726 8.61911 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.008971 B = 0.002659 C = 0.002163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3120.346041 B =10528.208009 C =12942.611021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.144 3.856 3 H 0.067 0.933 4 C 0.064 3.936 5 N -0.699 5.699 6 C 0.097 3.903 7 C -0.054 4.054 8 C -0.103 4.103 9 C -0.072 4.072 10 C -0.050 4.050 11 C 0.277 3.723 12 N -0.473 5.473 13 C -0.072 4.072 14 C -0.115 4.115 15 N -0.706 5.706 16 C 0.539 3.461 17 O -0.562 6.562 18 C -0.111 4.111 19 S -0.178 6.178 20 C -0.526 4.526 21 H 0.063 0.937 22 C 0.045 3.955 23 N -0.918 5.918 24 Si 0.913 3.087 25 H -0.262 1.262 26 H -0.261 1.261 27 H -0.237 1.237 28 H 0.072 0.928 29 H 0.032 0.968 30 H 0.085 0.915 31 H 0.060 0.940 32 H 0.103 0.897 33 H 0.343 0.657 34 H 0.061 0.939 35 H 0.096 0.904 36 H 0.149 0.851 37 H 0.142 0.858 38 H 0.142 0.858 39 H 0.152 0.848 40 H 0.412 0.588 41 H 0.112 0.888 42 H 0.113 0.887 43 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.301 -4.997 -29.979 30.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.039 3.961 3 H 0.086 0.914 4 C -0.065 4.065 5 N -0.332 5.332 6 C -0.031 4.031 7 C -0.055 4.055 8 C -0.121 4.121 9 C -0.093 4.093 10 C -0.053 4.053 11 C -0.037 4.037 12 N -0.149 5.149 13 C -0.092 4.092 14 C -0.134 4.134 15 N -0.360 5.360 16 C 0.324 3.676 17 O -0.441 6.441 18 C -0.262 4.262 19 S 0.048 5.952 20 C -0.674 4.674 21 H 0.081 0.919 22 C -0.161 4.161 23 N -0.556 5.556 24 Si 0.735 3.265 25 H -0.187 1.187 26 H -0.185 1.185 27 H -0.160 1.160 28 H 0.091 0.909 29 H 0.052 0.948 30 H 0.104 0.896 31 H 0.078 0.922 32 H 0.121 0.879 33 H 0.162 0.838 34 H 0.079 0.921 35 H 0.114 0.886 36 H 0.166 0.834 37 H 0.160 0.840 38 H 0.159 0.841 39 H 0.170 0.830 40 H 0.249 0.751 41 H 0.130 0.870 42 H 0.131 0.869 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -1.874 -2.565 -29.896 30.065 hybrid contribution 0.158 -2.132 1.149 2.427 sum -1.716 -4.697 -28.748 29.179 Atomic orbital electron populations 1.22119 0.94384 1.02975 1.02313 1.21084 0.94160 0.97334 0.83479 0.91446 1.22225 0.87090 1.00313 0.96855 1.60413 1.10164 1.57433 1.05144 1.21006 0.89080 0.98614 0.94439 1.20258 0.96314 0.93614 0.95345 1.21206 0.92322 0.99058 0.99557 1.21368 0.95763 0.95919 0.96215 1.16164 0.83140 0.99300 1.06738 1.26136 0.93069 0.92286 0.92199 1.81284 1.13632 1.09416 1.10551 1.21350 0.93998 0.97305 0.96586 1.21257 0.94016 0.98944 0.99169 1.45765 1.67388 1.14281 1.08523 1.19863 0.76685 0.86521 0.84533 1.90693 1.50643 1.17586 1.85135 1.23282 1.06167 1.02148 0.94627 1.84748 1.87150 1.18579 1.04705 1.22468 1.50230 0.98177 0.96485 0.91902 1.25557 0.93335 1.02149 0.95014 1.70017 1.44879 1.37681 1.03071 0.85881 0.79509 0.80575 0.80510 1.18695 1.18540 1.16043 0.90879 0.94847 0.89582 0.92225 0.87868 0.83819 0.92052 0.88552 0.83350 0.84011 0.84065 0.83041 0.75112 0.87002 0.86870 0.91438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.46 9.48 71.98 0.68 -1.78 16 2 C 0.14 2.38 2.88 44.99 0.13 2.51 16 3 H 0.07 1.57 7.58 -2.38 -0.02 1.56 16 4 C 0.06 0.54 5.30 86.31 0.46 1.00 16 5 N -0.70 -7.02 6.48 -517.93 -3.36 -10.37 16 6 C 0.10 0.56 5.81 85.56 0.50 1.06 16 7 C -0.05 -0.46 5.40 -19.80 -0.11 -0.57 16 8 C -0.10 -0.97 9.68 22.23 0.22 -0.76 16 9 C -0.07 -0.82 9.76 22.54 0.22 -0.60 16 10 C -0.05 -0.70 5.73 -21.36 -0.12 -0.82 16 11 C 0.28 5.44 15.33 88.33 1.35 6.80 16 12 N -0.47 -11.99 18.54 19.00 0.35 -11.64 16 13 C -0.07 -0.81 9.76 22.54 0.22 -0.59 16 14 C -0.12 -0.98 9.68 22.23 0.22 -0.76 16 15 N -0.71 -13.77 4.36 -442.52 -1.93 -15.69 16 16 C 0.54 17.11 7.81 87.66 0.68 17.80 16 17 O -0.56 -23.08 15.53 -3.04 -0.05 -23.12 16 18 C -0.11 -3.96 6.16 71.24 0.44 -3.53 16 19 S -0.18 -8.87 18.55 -56.49 -1.05 -9.91 16 20 C -0.53 -30.29 10.04 67.95 0.68 -29.60 16 21 H 0.06 3.80 8.03 -2.91 -0.02 3.78 16 22 C 0.04 2.61 5.50 84.86 0.47 3.08 16 23 N -0.92 -55.85 13.97 21.65 0.30 -55.55 16 24 Si 0.91 45.00 27.74 68.60 1.90 46.90 16 25 H -0.26 -12.59 7.11 99.48 0.71 -11.88 16 26 H -0.26 -12.12 7.11 99.48 0.71 -11.41 16 27 H -0.24 -11.64 6.74 99.48 0.67 -10.97 16 28 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.03 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.06 0.28 8.14 -2.39 -0.02 0.26 16 32 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.34 3.80 7.57 -89.69 -0.68 3.12 16 34 H 0.06 0.18 8.08 -2.39 -0.02 0.16 16 35 H 0.10 0.40 8.08 -2.39 -0.02 0.38 16 36 H 0.15 0.96 8.06 -2.91 -0.02 0.94 16 37 H 0.14 1.26 8.06 -2.91 -0.02 1.23 16 38 H 0.14 1.27 8.06 -2.91 -0.02 1.25 16 39 H 0.15 0.64 8.06 -2.91 -0.02 0.61 16 40 H 0.41 5.21 8.15 -92.71 -0.76 4.46 16 41 H 0.11 3.63 8.14 -2.39 -0.02 3.61 16 42 H 0.11 3.67 8.14 -2.40 -0.02 3.65 16 43 H 0.28 15.56 8.31 -92.71 -0.77 14.79 16 Total: -1.00 -79.26 389.45 1.78 -77.48 By element: Atomic # 1 Polarization: 9.12 SS G_CDS: -0.43 Total: 8.69 kcal Atomic # 6 Polarization: -12.81 SS G_CDS: 6.03 Total: -6.78 kcal Atomic # 7 Polarization: -88.62 SS G_CDS: -4.63 Total: -93.25 kcal Atomic # 8 Polarization: -23.08 SS G_CDS: -0.05 Total: -23.12 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 1.90 Total: 46.90 kcal Atomic # 16 Polarization: -8.87 SS G_CDS: -1.05 Total: -9.91 kcal Total: -79.26 1.78 -77.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732945297.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.234 kcal (2) G-P(sol) polarization free energy of solvation -79.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds