Wall clock time and date at job start Tue Mar 31 2020 18:44:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.46571 * 2 1 4 4 C 1.53001 * 109.47429 * 240.00342 * 2 1 3 5 5 N 1.46499 * 109.47178 * 184.99893 * 4 2 1 6 6 C 1.46505 * 119.99709 * 269.99650 * 5 4 2 7 7 C 1.36935 * 120.00246 * 89.99936 * 5 4 2 8 8 H 1.08004 * 119.99548 * 20.29428 * 7 5 4 9 9 C 1.38812 * 119.99870 * 200.29669 * 7 5 4 10 10 N 1.31609 * 119.99999 * 15.01362 * 9 7 5 11 11 Si 1.86801 * 119.99793 * 195.01106 * 9 7 5 12 12 H 1.48498 * 109.47053 * 85.00162 * 11 9 7 13 13 H 1.48498 * 109.47075 * 204.99988 * 11 9 7 14 14 H 1.48505 * 109.47133 * 325.00333 * 11 9 7 15 15 N 1.46504 * 109.47123 * 119.99953 * 2 1 3 16 16 C 1.34775 * 119.99984 * 275.00067 * 15 2 1 17 17 O 1.21287 * 119.99822 * 0.02562 * 16 15 2 18 18 C 1.50697 * 119.99968 * 180.02562 * 16 15 2 19 19 C 1.50696 * 109.47144 * 180.02562 * 18 16 15 20 20 N 1.28728 * 121.08471 * 90.02317 * 19 18 16 21 21 S 1.69396 * 108.98627 * 180.02562 * 20 19 18 22 22 C 1.76509 * 96.11927 * 0.02562 * 21 20 19 23 23 C 1.38780 * 133.55727 * 180.02562 * 22 21 20 24 24 C 1.36719 * 119.76009 * 179.97438 * 23 22 21 25 25 C 1.38973 * 120.14884 * 0.02562 * 24 23 22 26 26 C 1.36034 * 121.16174 * 359.97438 * 25 24 23 27 27 C 1.40810 * 105.51948 * 359.74069 * 22 21 20 28 28 H 1.09008 * 109.46573 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47228 * 299.99661 * 1 2 3 30 30 H 1.08994 * 109.47228 * 60.00022 * 1 2 3 31 31 H 1.09003 * 109.46629 * 304.99981 * 4 2 1 32 32 H 1.08999 * 109.47098 * 64.99517 * 4 2 1 33 33 H 1.09002 * 109.47006 * 95.10673 * 6 5 4 34 34 H 1.08997 * 109.46811 * 215.10378 * 6 5 4 35 35 H 1.09002 * 109.46928 * 335.10559 * 6 5 4 36 36 H 0.97006 * 120.00317 * 179.97438 * 10 9 7 37 37 H 0.96996 * 119.99508 * 95.00806 * 15 2 1 38 38 H 1.08996 * 109.47222 * 300.00131 * 18 16 15 39 39 H 1.09001 * 109.46716 * 60.00189 * 18 16 15 40 40 H 1.08008 * 120.12187 * 359.94916 * 23 22 21 41 41 H 1.08003 * 119.92456 * 179.97438 * 24 23 22 42 42 H 1.08006 * 119.41683 * 180.02562 * 25 24 23 43 43 H 1.07999 * 119.89258 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2493 5 7 3.5001 -0.8262 -1.1906 6 6 4.3344 0.2343 -1.7613 7 6 4.0851 -1.9157 -0.6023 8 1 3.5230 -2.8296 -0.4789 9 6 5.4006 -1.8454 -0.1646 10 7 5.9904 -0.6757 -0.0384 11 14 6.3334 -3.4110 0.2452 12 1 6.9258 -3.9733 -0.9950 13 1 7.4151 -3.1032 1.2150 14 1 5.4009 -4.4012 0.8414 15 7 2.0184 -0.6906 1.1962 16 6 2.1471 -0.0183 2.3572 17 8 1.8581 1.1584 2.4117 18 6 2.6499 -0.7285 3.5875 19 6 2.6999 0.2396 4.7412 20 7 1.6869 0.3992 5.5193 21 16 2.0749 1.5499 6.7003 22 6 3.7166 1.8584 6.1302 23 6 4.7377 2.6935 6.5616 24 6 5.9302 2.7087 5.8930 25 6 6.1196 1.8914 4.7851 26 6 5.1338 1.0646 4.3434 27 6 3.8919 1.0183 5.0138 28 1 -0.3633 -1.0278 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.6055 -1.7197 -1.2952 32 1 1.7517 -0.1582 -2.1370 33 1 4.6152 0.9373 -0.9770 34 1 5.2331 -0.2042 -2.1950 35 1 3.7754 0.7587 -2.5364 36 1 6.9096 -0.6265 0.2679 37 1 2.2491 -1.6317 1.1525 38 1 1.9778 -1.5508 3.8325 39 1 3.6493 -1.1202 3.3978 40 1 4.5907 3.3295 7.4221 41 1 6.7264 3.3578 6.2262 42 1 7.0666 1.9125 4.2660 43 1 5.3034 0.4378 3.4804 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733064929.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:44:53 Heat of formation + Delta-G solvation = 34.551430 kcal Electronic energy + Delta-G solvation = -26750.421949 eV Core-core repulsion = 23115.530827 eV Total energy + Delta-G solvation = -3634.891122 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.07059 -38.96748 -36.83163 -36.08642 -33.97807 -31.72005 -31.17454 -30.52812 -30.35518 -29.01847 -26.21060 -25.65182 -23.61218 -22.85617 -22.03318 -20.99943 -19.82112 -19.44747 -18.41627 -17.01056 -16.42651 -16.30750 -15.75218 -15.25017 -15.02540 -14.93575 -14.52967 -14.18114 -13.89410 -13.72382 -13.49677 -13.16542 -13.08016 -12.79556 -12.29826 -12.19146 -12.00563 -11.91029 -11.65823 -11.50861 -11.40168 -11.32233 -10.90870 -10.75923 -10.68229 -10.44879 -10.39827 -10.28620 -10.10562 -9.87707 -9.77548 -9.25377 -8.90136 -8.63324 -8.29105 -7.77883 -6.86660 -5.80573 -3.24987 0.57836 1.24506 1.50505 1.88667 2.18594 3.25526 3.28566 3.35705 3.38346 3.64135 3.93651 4.39050 4.40120 4.57680 4.91079 5.05447 5.24278 5.28793 5.35931 5.37935 5.46028 5.48731 5.52312 5.66055 5.74904 5.88854 5.95818 5.98071 6.09988 6.14893 6.23676 6.24044 6.43377 6.46261 6.52570 6.70401 6.70867 6.83705 6.86688 7.26113 7.32791 7.64022 7.73294 8.24698 8.28923 8.90381 9.13259 9.78077 10.27915 11.22970 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.011196 B = 0.004511 C = 0.003703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2500.354211 B = 6205.535767 C = 7559.456196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.120 3.880 3 H 0.076 0.924 4 C 0.142 3.858 5 N -0.598 5.598 6 C 0.163 3.837 7 C -0.255 4.255 8 H 0.067 0.933 9 C 0.006 3.994 10 N -0.898 5.898 11 Si 0.894 3.106 12 H -0.288 1.288 13 H -0.291 1.291 14 H -0.280 1.280 15 N -0.685 5.685 16 C 0.527 3.473 17 O -0.552 6.552 18 C -0.083 4.083 19 C 0.194 3.806 20 N -0.435 5.435 21 S 0.164 5.836 22 C -0.131 4.131 23 C -0.090 4.090 24 C -0.082 4.082 25 C -0.125 4.125 26 C -0.036 4.036 27 C -0.120 4.120 28 H 0.051 0.949 29 H 0.051 0.949 30 H 0.058 0.942 31 H 0.049 0.951 32 H 0.052 0.948 33 H 0.029 0.971 34 H 0.042 0.958 35 H -0.003 1.003 36 H 0.252 0.748 37 H 0.405 0.595 38 H 0.112 0.888 39 H 0.121 0.879 40 H 0.130 0.870 41 H 0.133 0.867 42 H 0.133 0.867 43 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.810 2.793 9.266 10.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.012 3.988 3 H 0.094 0.906 4 C 0.014 3.986 5 N -0.320 5.320 6 C 0.019 3.981 7 C -0.385 4.385 8 H 0.085 0.915 9 C -0.193 4.193 10 N -0.542 5.542 11 Si 0.724 3.276 12 H -0.215 1.215 13 H -0.218 1.218 14 H -0.206 1.206 15 N -0.335 5.335 16 C 0.311 3.689 17 O -0.431 6.431 18 C -0.128 4.128 19 C 0.004 3.996 20 N -0.246 5.246 21 S 0.319 5.681 22 C -0.252 4.252 23 C -0.113 4.113 24 C -0.104 4.104 25 C -0.145 4.145 26 C -0.058 4.058 27 C -0.131 4.131 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.077 0.923 31 H 0.067 0.933 32 H 0.070 0.930 33 H 0.047 0.953 34 H 0.061 0.939 35 H 0.015 0.985 36 H 0.062 0.938 37 H 0.240 0.760 38 H 0.130 0.870 39 H 0.139 0.861 40 H 0.148 0.852 41 H 0.150 0.850 42 H 0.151 0.849 43 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -4.905 3.683 10.551 12.204 hybrid contribution 2.255 -1.288 -0.742 2.701 sum -2.650 2.395 9.809 10.439 Atomic orbital electron populations 1.22158 0.96924 1.01265 1.01550 1.21814 0.91770 0.98356 0.86844 0.90583 1.21184 0.85881 0.97944 0.93611 1.43911 0.98924 1.22662 1.66524 1.20792 0.92871 0.90412 0.94045 1.19092 0.95966 0.89882 1.33519 0.91504 1.24911 0.98463 0.96078 0.99812 1.70102 1.12694 1.21625 1.49799 0.86456 0.79995 0.83260 0.77888 1.21543 1.21776 1.20552 1.45634 1.65138 1.14332 1.08347 1.19825 0.77859 0.87066 0.84199 1.90673 1.51222 1.15921 1.85307 1.20534 1.05770 0.96863 0.89664 1.21893 0.87984 0.95061 0.94639 1.75715 1.25323 1.15842 1.07716 1.84589 1.05688 1.42001 1.35819 1.23420 1.00054 1.01560 1.00124 1.19908 0.91856 0.98687 1.00856 1.21041 0.96619 0.97881 0.94892 1.20800 0.99806 0.96744 0.97171 1.20923 0.90048 0.97131 0.97670 1.20124 0.96057 0.99379 0.97575 0.92985 0.92970 0.92311 0.93284 0.92975 0.95260 0.93885 0.98489 0.93785 0.75961 0.86972 0.86068 0.85220 0.84952 0.84887 0.84109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.43 9.48 37.16 0.35 -2.08 16 2 C 0.12 2.18 2.88 -67.93 -0.20 1.99 16 3 H 0.08 1.62 7.58 -51.93 -0.39 1.23 16 4 C 0.14 2.62 5.36 -4.04 -0.02 2.60 16 5 N -0.60 -13.50 2.82 -181.11 -0.51 -14.01 16 6 C 0.16 3.82 9.02 59.85 0.54 4.36 16 7 C -0.26 -6.08 8.02 -15.06 -0.12 -6.20 16 8 H 0.07 1.54 7.86 -52.48 -0.41 1.13 16 9 C 0.01 0.16 5.06 -17.43 -0.09 0.07 16 10 N -0.90 -23.53 10.66 55.49 0.59 -22.94 16 11 Si 0.89 19.71 29.58 -169.99 -5.03 14.68 16 12 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 13 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 14 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 15 N -0.68 -12.53 4.49 -53.80 -0.24 -12.77 16 16 C 0.53 10.13 7.79 -10.99 -0.09 10.05 16 17 O -0.55 -12.58 15.70 5.55 0.09 -12.49 16 18 C -0.08 -1.34 5.97 -29.04 -0.17 -1.52 16 19 C 0.19 3.37 5.37 -81.23 -0.44 2.94 16 20 N -0.44 -7.69 11.84 34.00 0.40 -7.29 16 21 S 0.16 2.52 23.86 -107.50 -2.56 -0.05 16 22 C -0.13 -2.01 6.71 -38.41 -0.26 -2.27 16 23 C -0.09 -1.11 10.02 -39.93 -0.40 -1.52 16 24 C -0.08 -0.93 10.01 -39.86 -0.40 -1.33 16 25 C -0.12 -1.65 9.92 -40.10 -0.40 -2.04 16 26 C -0.04 -0.56 9.72 -39.25 -0.38 -0.95 16 27 C -0.12 -2.01 6.04 -105.14 -0.64 -2.65 16 28 H 0.05 0.71 8.14 -51.92 -0.42 0.29 16 29 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.05 0.85 8.03 -51.93 -0.42 0.44 16 32 H 0.05 0.89 7.86 -51.93 -0.41 0.48 16 33 H 0.03 0.76 7.40 -51.93 -0.38 0.37 16 34 H 0.04 1.08 7.21 -51.93 -0.37 0.70 16 35 H 0.00 -0.07 7.84 -51.93 -0.41 -0.48 16 36 H 0.25 6.50 8.31 -40.82 -0.34 6.16 16 37 H 0.40 7.10 7.40 -40.82 -0.30 6.79 16 38 H 0.11 1.52 8.14 -51.93 -0.42 1.10 16 39 H 0.12 1.84 7.54 -51.93 -0.39 1.44 16 40 H 0.13 1.23 8.06 -52.48 -0.42 0.81 16 41 H 0.13 1.06 8.06 -52.48 -0.42 0.64 16 42 H 0.13 1.50 8.06 -52.48 -0.42 1.08 16 43 H 0.14 2.35 7.64 -52.49 -0.40 1.95 16 LS Contribution 373.07 15.07 5.62 5.62 Total: -1.00 -30.41 373.07 -10.33 -40.74 By element: Atomic # 1 Polarization: 13.03 SS G_CDS: -5.99 Total: 7.04 kcal Atomic # 6 Polarization: 4.15 SS G_CDS: -2.70 Total: 1.45 kcal Atomic # 7 Polarization: -57.24 SS G_CDS: 0.24 Total: -57.00 kcal Atomic # 8 Polarization: -12.58 SS G_CDS: 0.09 Total: -12.49 kcal Atomic # 14 Polarization: 19.71 SS G_CDS: -5.03 Total: 14.68 kcal Atomic # 16 Polarization: 2.52 SS G_CDS: -2.56 Total: -0.05 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -30.41 -10.33 -40.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733064929.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.293 kcal (2) G-P(sol) polarization free energy of solvation -30.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.742 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds