Wall clock time and date at job start Tue Mar 31 2020 18:44:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.46571 * 2 1 4 4 C 1.53001 * 109.47429 * 240.00342 * 2 1 3 5 5 N 1.46499 * 109.47178 * 184.99893 * 4 2 1 6 6 C 1.46505 * 119.99709 * 269.99650 * 5 4 2 7 7 C 1.36935 * 120.00246 * 89.99936 * 5 4 2 8 8 H 1.08004 * 119.99548 * 20.29428 * 7 5 4 9 9 C 1.38812 * 119.99870 * 200.29669 * 7 5 4 10 10 N 1.31609 * 119.99999 * 15.01362 * 9 7 5 11 11 Si 1.86801 * 119.99793 * 195.01106 * 9 7 5 12 12 H 1.48498 * 109.47053 * 85.00162 * 11 9 7 13 13 H 1.48498 * 109.47075 * 204.99988 * 11 9 7 14 14 H 1.48505 * 109.47133 * 325.00333 * 11 9 7 15 15 N 1.46504 * 109.47123 * 119.99953 * 2 1 3 16 16 C 1.34775 * 119.99984 * 275.00067 * 15 2 1 17 17 O 1.21287 * 119.99822 * 0.02562 * 16 15 2 18 18 C 1.50697 * 119.99968 * 180.02562 * 16 15 2 19 19 C 1.50696 * 109.47144 * 180.02562 * 18 16 15 20 20 N 1.28728 * 121.08471 * 90.02317 * 19 18 16 21 21 S 1.69396 * 108.98627 * 180.02562 * 20 19 18 22 22 C 1.76509 * 96.11927 * 0.02562 * 21 20 19 23 23 C 1.38780 * 133.55727 * 180.02562 * 22 21 20 24 24 C 1.36719 * 119.76009 * 179.97438 * 23 22 21 25 25 C 1.38973 * 120.14884 * 0.02562 * 24 23 22 26 26 C 1.36034 * 121.16174 * 359.97438 * 25 24 23 27 27 C 1.40810 * 105.51948 * 359.74069 * 22 21 20 28 28 H 1.09008 * 109.46573 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47228 * 299.99661 * 1 2 3 30 30 H 1.08994 * 109.47228 * 60.00022 * 1 2 3 31 31 H 1.09003 * 109.46629 * 304.99981 * 4 2 1 32 32 H 1.08999 * 109.47098 * 64.99517 * 4 2 1 33 33 H 1.09002 * 109.47006 * 95.10673 * 6 5 4 34 34 H 1.08997 * 109.46811 * 215.10378 * 6 5 4 35 35 H 1.09002 * 109.46928 * 335.10559 * 6 5 4 36 36 H 0.97006 * 120.00317 * 179.97438 * 10 9 7 37 37 H 0.96996 * 119.99508 * 95.00806 * 15 2 1 38 38 H 1.08996 * 109.47222 * 300.00131 * 18 16 15 39 39 H 1.09001 * 109.46716 * 60.00189 * 18 16 15 40 40 H 1.08008 * 120.12187 * 359.94916 * 23 22 21 41 41 H 1.08003 * 119.92456 * 179.97438 * 24 23 22 42 42 H 1.08006 * 119.41683 * 180.02562 * 25 24 23 43 43 H 1.07999 * 119.89258 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2493 5 7 3.5001 -0.8262 -1.1906 6 6 4.3344 0.2343 -1.7613 7 6 4.0851 -1.9157 -0.6023 8 1 3.5230 -2.8296 -0.4789 9 6 5.4006 -1.8454 -0.1646 10 7 5.9904 -0.6757 -0.0384 11 14 6.3334 -3.4110 0.2452 12 1 6.9258 -3.9733 -0.9950 13 1 7.4151 -3.1032 1.2150 14 1 5.4009 -4.4012 0.8414 15 7 2.0184 -0.6906 1.1962 16 6 2.1471 -0.0183 2.3572 17 8 1.8581 1.1584 2.4117 18 6 2.6499 -0.7285 3.5875 19 6 2.6999 0.2396 4.7412 20 7 1.6869 0.3992 5.5193 21 16 2.0749 1.5499 6.7003 22 6 3.7166 1.8584 6.1302 23 6 4.7377 2.6935 6.5616 24 6 5.9302 2.7087 5.8930 25 6 6.1196 1.8914 4.7851 26 6 5.1338 1.0646 4.3434 27 6 3.8919 1.0183 5.0138 28 1 -0.3633 -1.0278 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.6055 -1.7197 -1.2952 32 1 1.7517 -0.1582 -2.1370 33 1 4.6152 0.9373 -0.9770 34 1 5.2331 -0.2042 -2.1950 35 1 3.7754 0.7587 -2.5364 36 1 6.9096 -0.6265 0.2679 37 1 2.2491 -1.6317 1.1525 38 1 1.9778 -1.5508 3.8325 39 1 3.6493 -1.1202 3.3978 40 1 4.5907 3.3295 7.4221 41 1 6.7264 3.3578 6.2262 42 1 7.0666 1.9125 4.2660 43 1 5.3034 0.4378 3.4804 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733064929.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:44:52 Heat of formation + Delta-G solvation = 17.069642 kcal Electronic energy + Delta-G solvation = -26751.180016 eV Core-core repulsion = 23115.530827 eV Total energy + Delta-G solvation = -3635.649189 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.33141 -40.35764 -38.21321 -37.55938 -35.65872 -33.31492 -32.49321 -31.94335 -31.49705 -30.35977 -27.99796 -27.33235 -24.79680 -23.98928 -23.56787 -22.50392 -21.31148 -20.83249 -19.55208 -18.73878 -18.02320 -17.41926 -17.21043 -16.70548 -16.45554 -16.10230 -15.94043 -15.55591 -15.47915 -15.03462 -14.86101 -14.71515 -14.55352 -14.24795 -13.82257 -13.56802 -13.23954 -13.09271 -13.06452 -12.86308 -12.84168 -12.67897 -12.64121 -12.48405 -12.13451 -11.91827 -11.90179 -11.81446 -11.64574 -11.63239 -11.00438 -10.73919 -10.53204 -9.99865 -9.82740 -8.93305 -8.73135 -7.70218 -5.15989 -0.57823 0.15337 0.35312 0.66452 0.99050 1.52159 1.57395 1.61539 1.74623 2.43298 2.58286 2.65376 3.20151 3.43743 3.44250 3.73360 3.81139 3.97293 4.06904 4.17111 4.21527 4.28654 4.32447 4.43502 4.46772 4.55723 4.60922 4.77725 4.86546 4.89086 4.93219 4.98377 5.02251 5.19426 5.21300 5.36857 5.39052 5.41416 5.52712 5.71835 5.77678 5.78385 5.79541 6.40390 6.75261 7.23330 7.41082 7.95365 8.42081 9.32925 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.011196 B = 0.004511 C = 0.003703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2500.354211 B = 6205.535767 C = 7559.456196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.123 3.877 3 H 0.038 0.962 4 C 0.143 3.857 5 N -0.610 5.610 6 C 0.179 3.821 7 C -0.249 4.249 8 H 0.081 0.919 9 C -0.040 4.040 10 N -0.929 5.929 11 Si 0.948 3.052 12 H -0.298 1.298 13 H -0.302 1.302 14 H -0.263 1.263 15 N -0.682 5.682 16 C 0.523 3.477 17 O -0.593 6.593 18 C -0.078 4.078 19 C 0.183 3.817 20 N -0.464 5.464 21 S 0.178 5.822 22 C -0.145 4.145 23 C -0.088 4.088 24 C -0.067 4.067 25 C -0.125 4.125 26 C -0.060 4.060 27 C -0.149 4.149 28 H 0.072 0.928 29 H 0.033 0.967 30 H 0.079 0.921 31 H 0.070 0.930 32 H 0.071 0.929 33 H -0.005 1.005 34 H 0.018 0.982 35 H 0.024 0.976 36 H 0.244 0.756 37 H 0.409 0.591 38 H 0.137 0.863 39 H 0.126 0.874 40 H 0.165 0.835 41 H 0.178 0.822 42 H 0.150 0.850 43 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.038 2.490 9.929 10.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.016 3.984 3 H 0.057 0.943 4 C 0.016 3.984 5 N -0.332 5.332 6 C 0.033 3.967 7 C -0.379 4.379 8 H 0.098 0.902 9 C -0.236 4.236 10 N -0.575 5.575 11 Si 0.778 3.222 12 H -0.226 1.226 13 H -0.229 1.229 14 H -0.187 1.187 15 N -0.331 5.331 16 C 0.308 3.692 17 O -0.475 6.475 18 C -0.122 4.122 19 C -0.007 4.007 20 N -0.275 5.275 21 S 0.333 5.667 22 C -0.265 4.265 23 C -0.111 4.111 24 C -0.089 4.089 25 C -0.145 4.145 26 C -0.083 4.083 27 C -0.160 4.160 28 H 0.091 0.909 29 H 0.052 0.948 30 H 0.098 0.902 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.013 0.987 34 H 0.037 0.963 35 H 0.043 0.957 36 H 0.053 0.947 37 H 0.246 0.754 38 H 0.155 0.845 39 H 0.144 0.856 40 H 0.182 0.818 41 H 0.195 0.805 42 H 0.168 0.832 43 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -5.175 3.337 11.199 12.781 hybrid contribution 2.341 -1.113 -0.974 2.769 sum -2.834 2.224 10.225 10.841 Atomic orbital electron populations 1.22028 0.94133 1.02679 1.01732 1.21710 0.93828 0.96180 0.86720 0.94338 1.21359 0.83397 0.99392 0.94249 1.44123 1.00699 1.22098 1.66308 1.20490 0.92680 0.90006 0.93492 1.19424 0.95942 0.90597 1.31909 0.90164 1.25496 0.99472 0.97955 1.00676 1.70265 1.12392 1.23313 1.51544 0.85572 0.78807 0.80934 0.76844 1.22570 1.22926 1.18701 1.45669 1.64692 1.14450 1.08271 1.20290 0.77107 0.86660 0.85113 1.90642 1.53099 1.17739 1.86022 1.20522 1.06374 0.97125 0.88187 1.22072 0.88359 0.95469 0.94824 1.75574 1.26034 1.17203 1.08692 1.84335 1.06035 1.41400 1.34921 1.23733 1.00581 1.02214 0.99992 1.20434 0.91146 0.97897 1.01593 1.21526 0.97268 0.96918 0.93189 1.21135 0.99679 0.95937 0.97701 1.20891 0.90984 0.98583 0.97819 1.20265 0.96306 1.00535 0.98857 0.90862 0.94751 0.90180 0.91216 0.91059 0.98699 0.96291 0.95739 0.94681 0.75399 0.84488 0.85622 0.81799 0.80493 0.83187 0.86334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.21 9.48 71.98 0.68 -3.53 16 2 C 0.12 4.41 2.88 44.99 0.13 4.54 16 3 H 0.04 1.68 7.58 -2.39 -0.02 1.66 16 4 C 0.14 5.00 5.36 86.38 0.46 5.46 16 5 N -0.61 -27.15 2.82 -726.92 -2.05 -29.20 16 6 C 0.18 8.44 9.02 127.77 1.15 9.60 16 7 C -0.25 -11.65 8.02 84.03 0.67 -10.97 16 8 H 0.08 3.52 7.86 -2.91 -0.02 3.49 16 9 C -0.04 -1.99 5.06 84.86 0.43 -1.56 16 10 N -0.93 -50.12 10.66 21.65 0.23 -49.89 16 11 Si 0.95 40.60 29.58 68.60 2.03 42.63 16 12 H -0.30 -13.14 7.11 99.48 0.71 -12.44 16 13 H -0.30 -13.37 7.11 99.48 0.71 -12.66 16 14 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 15 N -0.68 -24.90 4.49 -442.52 -1.99 -26.89 16 16 C 0.52 20.66 7.79 87.66 0.68 21.34 16 17 O -0.59 -28.11 15.70 -3.05 -0.05 -28.16 16 18 C -0.08 -2.56 5.97 29.10 0.17 -2.39 16 19 C 0.18 6.52 5.37 44.74 0.24 6.76 16 20 N -0.46 -16.68 11.84 -46.33 -0.55 -17.22 16 21 S 0.18 5.43 23.86 -56.49 -1.35 4.08 16 22 C -0.15 -4.35 6.71 23.03 0.15 -4.19 16 23 C -0.09 -1.95 10.02 22.04 0.22 -1.73 16 24 C -0.07 -1.32 10.01 22.09 0.22 -1.10 16 25 C -0.12 -3.16 9.92 21.93 0.22 -2.94 16 26 C -0.06 -1.97 9.72 22.49 0.22 -1.75 16 27 C -0.15 -5.10 6.04 -20.20 -0.12 -5.22 16 28 H 0.07 1.80 8.14 -2.38 -0.02 1.78 16 29 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 31 H 0.07 2.19 8.03 -2.39 -0.02 2.17 16 32 H 0.07 2.24 7.86 -2.39 -0.02 2.22 16 33 H -0.01 -0.29 7.40 -2.39 -0.02 -0.30 16 34 H 0.02 0.95 7.21 -2.39 -0.02 0.93 16 35 H 0.02 0.99 7.84 -2.39 -0.02 0.97 16 36 H 0.24 13.05 8.31 -92.70 -0.77 12.28 16 37 H 0.41 14.02 7.40 -92.71 -0.69 13.34 16 38 H 0.14 3.70 8.14 -2.39 -0.02 3.68 16 39 H 0.13 3.97 7.54 -2.39 -0.02 3.95 16 40 H 0.16 2.47 8.06 -2.91 -0.02 2.44 16 41 H 0.18 1.93 8.06 -2.91 -0.02 1.91 16 42 H 0.15 3.20 8.06 -2.91 -0.02 3.18 16 43 H 0.12 4.28 7.64 -2.91 -0.02 4.26 16 Total: -1.00 -68.30 373.07 2.16 -66.14 By element: Atomic # 1 Polarization: 25.87 SS G_CDS: 0.34 Total: 26.21 kcal Atomic # 6 Polarization: 6.77 SS G_CDS: 5.54 Total: 12.31 kcal Atomic # 7 Polarization: -118.85 SS G_CDS: -4.35 Total: -123.20 kcal Atomic # 8 Polarization: -28.11 SS G_CDS: -0.05 Total: -28.16 kcal Atomic # 14 Polarization: 40.60 SS G_CDS: 2.03 Total: 42.63 kcal Atomic # 16 Polarization: 5.43 SS G_CDS: -1.35 Total: 4.08 kcal Total: -68.30 2.16 -66.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733064929.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.207 kcal (2) G-P(sol) polarization free energy of solvation -68.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.137 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds