Wall clock time and date at job start Tue Mar 31 2020 18:44:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.46774 * 2 1 4 4 C 1.52996 * 109.46808 * 119.99283 * 2 1 3 5 5 N 1.46501 * 109.47094 * 174.99939 * 4 2 1 6 6 C 1.46496 * 120.00140 * 270.00441 * 5 4 2 7 7 C 1.36939 * 119.99803 * 90.00463 * 5 4 2 8 8 H 1.08001 * 119.99672 * 23.60617 * 7 5 4 9 9 C 1.38809 * 120.00056 * 203.61550 * 7 5 4 10 10 N 1.31625 * 119.99831 * 11.30421 * 9 7 5 11 11 Si 1.86797 * 120.00140 * 191.31252 * 9 7 5 12 12 H 1.48493 * 109.47399 * 59.99409 * 11 9 7 13 13 H 1.48499 * 109.47101 * 179.97438 * 11 9 7 14 14 H 1.48501 * 109.46678 * 299.99427 * 11 9 7 15 15 N 1.46499 * 109.47152 * 239.99261 * 2 1 3 16 16 C 1.34783 * 119.99329 * 85.00318 * 15 2 1 17 17 O 1.21274 * 120.00473 * 359.97438 * 16 15 2 18 18 C 1.50697 * 119.99379 * 179.97438 * 16 15 2 19 19 C 1.50699 * 109.47220 * 179.97438 * 18 16 15 20 20 N 1.28730 * 121.08684 * 269.72545 * 19 18 16 21 21 S 1.69396 * 108.98776 * 180.27087 * 20 19 18 22 22 C 1.76510 * 96.11650 * 359.97438 * 21 20 19 23 23 C 1.38789 * 133.55649 * 179.97438 * 22 21 20 24 24 C 1.36706 * 119.75777 * 180.02562 * 23 22 21 25 25 C 1.38975 * 120.15622 * 0.02562 * 24 23 22 26 26 C 1.36045 * 121.15638 * 0.02562 * 25 24 23 27 27 C 1.40805 * 105.52286 * 0.02562 * 22 21 20 28 28 H 1.08996 * 109.47241 * 300.00709 * 1 2 3 29 29 H 1.09001 * 109.46689 * 60.00570 * 1 2 3 30 30 H 1.09000 * 109.46774 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47513 * 295.00616 * 4 2 1 32 32 H 1.09002 * 109.47247 * 55.00214 * 4 2 1 33 33 H 1.09000 * 109.47401 * 94.53311 * 6 5 4 34 34 H 1.09005 * 109.47201 * 214.53387 * 6 5 4 35 35 H 1.09005 * 109.47140 * 334.52961 * 6 5 4 36 36 H 0.97004 * 119.99703 * 180.02562 * 10 9 7 37 37 H 0.96988 * 120.00316 * 264.99824 * 15 2 1 38 38 H 1.09001 * 109.47003 * 60.00312 * 18 16 15 39 39 H 1.08996 * 109.47799 * 300.00252 * 18 16 15 40 40 H 1.08004 * 120.11873 * 359.97438 * 23 22 21 41 41 H 1.08008 * 119.92675 * 179.97438 * 24 23 22 42 42 H 1.07999 * 119.42643 * 180.02562 * 25 24 23 43 43 H 1.07993 * 119.89662 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 7 3.5000 -0.8263 1.1907 6 6 4.1258 -1.9918 0.5615 7 6 4.2798 0.1650 1.7242 8 1 3.8832 0.8073 2.4965 9 6 5.5799 0.3443 1.2721 10 7 5.9919 -0.2796 0.1888 11 14 6.7448 1.4709 2.2011 12 1 6.9134 0.9723 3.5897 13 1 8.0638 1.4903 1.5191 14 1 6.1835 2.8453 2.2334 15 7 2.0184 -0.6908 -1.1961 16 6 2.1471 -0.0184 -2.3571 17 8 1.8583 1.1582 -2.4118 18 6 2.6500 -0.7288 -3.5873 19 6 2.7001 0.2392 -4.7412 20 7 1.6888 0.3953 -5.5222 21 16 2.0792 1.5410 -6.7073 22 6 3.7196 1.8522 -6.1348 23 6 4.7416 2.6856 -6.5675 24 6 5.9324 2.7038 -5.8964 25 6 6.1200 1.8906 -4.7851 26 6 5.1336 1.0647 -4.3428 27 6 3.8906 1.0210 -5.0112 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 1.7515 -0.1582 2.1370 32 1 1.6054 -1.7197 1.2953 33 1 4.3533 -1.7642 -0.4799 34 1 5.0472 -2.2387 1.0891 35 1 3.4426 -2.8400 0.6072 36 1 6.9006 -0.1545 -0.1269 37 1 2.2491 -1.6318 -1.1524 38 1 1.9777 -1.5511 -3.8323 39 1 3.6493 -1.1206 -3.3977 40 1 4.5968 3.3169 -7.4318 41 1 6.7297 3.3510 -6.2310 42 1 7.0654 1.9146 -4.2635 43 1 5.3012 0.4416 -3.4767 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733064930.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:44:57 Heat of formation + Delta-G solvation = 35.338825 kcal Electronic energy + Delta-G solvation = -26644.664163 eV Core-core repulsion = 23009.807185 eV Total energy + Delta-G solvation = -3634.856978 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.11881 -39.04318 -36.86543 -36.11479 -34.00719 -31.72662 -31.15715 -30.57248 -30.39414 -29.13107 -26.20606 -25.62585 -23.64856 -22.88328 -22.05105 -20.94105 -19.99737 -19.49330 -18.44496 -16.83602 -16.78136 -16.34247 -15.71462 -15.27988 -15.05786 -14.90288 -14.57382 -14.21888 -13.89983 -13.69811 -13.58919 -13.18730 -13.15718 -12.83596 -12.31256 -12.16598 -12.05123 -11.94971 -11.69794 -11.55212 -11.43542 -11.10780 -10.85525 -10.80856 -10.70986 -10.57969 -10.44624 -10.24039 -10.01257 -9.88636 -9.80090 -9.33044 -8.92291 -8.62475 -8.37631 -7.80712 -6.78107 -5.77311 -3.22498 0.55160 1.22578 1.47508 1.85041 2.14705 3.17164 3.37297 3.41362 3.43582 3.60601 3.84482 4.34184 4.47844 4.54465 4.88957 4.99770 5.20026 5.25129 5.34294 5.36619 5.38627 5.46496 5.49909 5.65448 5.70062 5.86323 5.93667 5.99728 6.06528 6.09944 6.21963 6.24288 6.44490 6.47461 6.53399 6.61750 6.66970 6.81173 6.87784 7.16721 7.27798 7.60090 7.77000 8.08940 8.35721 8.79212 9.19813 9.81621 10.30002 11.27986 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.011187 B = 0.004414 C = 0.003428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2502.193567 B = 6341.322607 C = 8166.568130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.119 3.881 3 H 0.085 0.915 4 C 0.143 3.857 5 N -0.597 5.597 6 C 0.162 3.838 7 C -0.254 4.254 8 H 0.066 0.934 9 C 0.008 3.992 10 N -0.906 5.906 11 Si 0.902 3.098 12 H -0.285 1.285 13 H -0.291 1.291 14 H -0.284 1.284 15 N -0.696 5.696 16 C 0.527 3.473 17 O -0.542 6.542 18 C -0.083 4.083 19 C 0.193 3.807 20 N -0.436 5.436 21 S 0.167 5.833 22 C -0.132 4.132 23 C -0.090 4.090 24 C -0.082 4.082 25 C -0.124 4.124 26 C -0.036 4.036 27 C -0.120 4.120 28 H 0.060 0.940 29 H 0.051 0.949 30 H 0.049 0.951 31 H 0.058 0.942 32 H 0.042 0.958 33 H 0.031 0.969 34 H 0.043 0.957 35 H -0.005 1.005 36 H 0.251 0.749 37 H 0.396 0.604 38 H 0.112 0.888 39 H 0.121 0.879 40 H 0.130 0.870 41 H 0.133 0.867 42 H 0.133 0.867 43 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.080 -1.261 -11.498 11.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.011 3.989 3 H 0.103 0.897 4 C 0.015 3.985 5 N -0.319 5.319 6 C 0.017 3.983 7 C -0.384 4.384 8 H 0.084 0.916 9 C -0.191 4.191 10 N -0.551 5.551 11 Si 0.732 3.268 12 H -0.212 1.212 13 H -0.217 1.217 14 H -0.210 1.210 15 N -0.345 5.345 16 C 0.310 3.690 17 O -0.420 6.420 18 C -0.128 4.128 19 C 0.002 3.998 20 N -0.246 5.246 21 S 0.322 5.678 22 C -0.252 4.252 23 C -0.113 4.113 24 C -0.104 4.104 25 C -0.144 4.144 26 C -0.058 4.058 27 C -0.131 4.131 28 H 0.079 0.921 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.077 0.923 32 H 0.060 0.940 33 H 0.049 0.951 34 H 0.061 0.939 35 H 0.013 0.987 36 H 0.061 0.939 37 H 0.230 0.770 38 H 0.131 0.869 39 H 0.139 0.861 40 H 0.148 0.852 41 H 0.151 0.849 42 H 0.151 0.849 43 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -5.178 -0.417 -12.827 13.839 hybrid contribution 2.316 0.221 1.429 2.730 sum -2.862 -0.196 -11.398 11.753 Atomic orbital electron populations 1.22155 0.96929 1.01087 1.01681 1.21856 0.91624 0.99141 0.86235 0.89683 1.21195 0.85782 0.97225 0.94320 1.43871 0.99038 1.20838 1.68161 1.20845 0.94597 0.85050 0.97797 1.19131 0.94598 1.10466 1.14187 0.91599 1.24958 0.98775 0.98983 0.96364 1.70014 1.17161 1.45770 1.22149 0.86380 0.80324 0.80830 0.79270 1.21163 1.21661 1.21009 1.45701 1.66136 1.13647 1.09051 1.19849 0.77913 0.87164 0.84066 1.90693 1.50437 1.15791 1.85061 1.20538 1.05583 0.96925 0.89725 1.21852 0.88089 0.95137 0.94675 1.75698 1.25289 1.15985 1.07654 1.84603 1.05742 1.42223 1.35277 1.23419 1.00046 1.01714 1.00027 1.19909 0.91852 0.98646 1.00866 1.21046 0.96648 0.97840 0.94864 1.20812 0.99886 0.96660 0.97088 1.20914 0.89980 0.97218 0.97663 1.20106 0.96026 0.99485 0.97516 0.92138 0.93009 0.93171 0.92340 0.93996 0.95073 0.93864 0.98688 0.93899 0.77017 0.86946 0.86140 0.85202 0.84938 0.84872 0.84070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.43 9.48 37.16 0.35 -2.07 16 2 C 0.12 2.18 2.88 -67.93 -0.20 1.98 16 3 H 0.09 1.92 7.58 -51.93 -0.39 1.52 16 4 C 0.14 2.67 5.33 -4.04 -0.02 2.65 16 5 N -0.60 -13.66 2.78 -181.12 -0.50 -14.16 16 6 C 0.16 3.51 7.61 59.84 0.46 3.96 16 7 C -0.25 -6.63 9.66 -15.06 -0.15 -6.78 16 8 H 0.07 1.72 7.85 -52.49 -0.41 1.30 16 9 C 0.01 0.20 5.13 -17.43 -0.09 0.11 16 10 N -0.91 -24.23 10.66 55.49 0.59 -23.64 16 11 Si 0.90 21.31 29.57 -169.99 -5.03 16.28 16 12 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 13 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 14 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 15 N -0.70 -12.07 4.41 -53.81 -0.24 -12.31 16 16 C 0.53 9.77 7.79 -10.98 -0.09 9.69 16 17 O -0.54 -12.31 15.70 5.56 0.09 -12.23 16 18 C -0.08 -1.23 5.97 -29.04 -0.17 -1.41 16 19 C 0.19 3.21 5.37 -81.23 -0.44 2.78 16 20 N -0.44 -7.45 11.84 34.01 0.40 -7.05 16 21 S 0.17 2.50 23.86 -107.50 -2.56 -0.07 16 22 C -0.13 -1.98 6.71 -38.41 -0.26 -2.24 16 23 C -0.09 -1.10 10.02 -39.93 -0.40 -1.50 16 24 C -0.08 -0.93 10.00 -39.86 -0.40 -1.32 16 25 C -0.12 -1.63 9.92 -40.10 -0.40 -2.02 16 26 C -0.04 -0.55 9.72 -39.25 -0.38 -0.93 16 27 C -0.12 -1.96 6.04 -105.14 -0.64 -2.59 16 28 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 29 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.06 1.08 8.03 -51.93 -0.42 0.66 16 32 H 0.04 0.69 7.86 -51.93 -0.41 0.28 16 33 H 0.03 0.70 6.90 -51.93 -0.36 0.34 16 34 H 0.04 1.05 7.30 -51.93 -0.38 0.67 16 35 H -0.01 -0.10 7.84 -51.93 -0.41 -0.51 16 36 H 0.25 6.60 8.31 -40.82 -0.34 6.26 16 37 H 0.40 6.10 7.17 -40.82 -0.29 5.81 16 38 H 0.11 1.37 8.14 -51.93 -0.42 0.94 16 39 H 0.12 1.61 7.55 -51.93 -0.39 1.21 16 40 H 0.13 1.22 8.06 -52.48 -0.42 0.80 16 41 H 0.13 1.07 8.06 -52.48 -0.42 0.64 16 42 H 0.13 1.51 8.06 -52.49 -0.42 1.09 16 43 H 0.14 2.26 7.65 -52.49 -0.40 1.86 16 LS Contribution 372.56 15.07 5.61 5.61 Total: -1.00 -32.05 372.56 -10.40 -42.45 By element: Atomic # 1 Polarization: 10.77 SS G_CDS: -5.96 Total: 4.81 kcal Atomic # 6 Polarization: 3.11 SS G_CDS: -2.81 Total: 0.30 kcal Atomic # 7 Polarization: -57.42 SS G_CDS: 0.25 Total: -57.16 kcal Atomic # 8 Polarization: -12.31 SS G_CDS: 0.09 Total: -12.23 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.03 Total: 16.28 kcal Atomic # 16 Polarization: 2.50 SS G_CDS: -2.56 Total: -0.07 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -32.05 -10.40 -42.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733064930.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.788 kcal (2) G-P(sol) polarization free energy of solvation -32.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.449 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds