Wall clock time and date at job start Tue Mar 31 2020 18:44:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.46774 * 2 1 4 4 C 1.52996 * 109.46808 * 119.99283 * 2 1 3 5 5 N 1.46501 * 109.47094 * 174.99939 * 4 2 1 6 6 C 1.46496 * 120.00140 * 270.00441 * 5 4 2 7 7 C 1.36939 * 119.99803 * 90.00463 * 5 4 2 8 8 H 1.08001 * 119.99672 * 23.60617 * 7 5 4 9 9 C 1.38809 * 120.00056 * 203.61550 * 7 5 4 10 10 N 1.31625 * 119.99831 * 11.30421 * 9 7 5 11 11 Si 1.86797 * 120.00140 * 191.31252 * 9 7 5 12 12 H 1.48493 * 109.47399 * 59.99409 * 11 9 7 13 13 H 1.48499 * 109.47101 * 179.97438 * 11 9 7 14 14 H 1.48501 * 109.46678 * 299.99427 * 11 9 7 15 15 N 1.46499 * 109.47152 * 239.99261 * 2 1 3 16 16 C 1.34783 * 119.99329 * 85.00318 * 15 2 1 17 17 O 1.21274 * 120.00473 * 359.97438 * 16 15 2 18 18 C 1.50697 * 119.99379 * 179.97438 * 16 15 2 19 19 C 1.50699 * 109.47220 * 179.97438 * 18 16 15 20 20 N 1.28730 * 121.08684 * 269.72545 * 19 18 16 21 21 S 1.69396 * 108.98776 * 180.27087 * 20 19 18 22 22 C 1.76510 * 96.11650 * 359.97438 * 21 20 19 23 23 C 1.38789 * 133.55649 * 179.97438 * 22 21 20 24 24 C 1.36706 * 119.75777 * 180.02562 * 23 22 21 25 25 C 1.38975 * 120.15622 * 0.02562 * 24 23 22 26 26 C 1.36045 * 121.15638 * 0.02562 * 25 24 23 27 27 C 1.40805 * 105.52286 * 0.02562 * 22 21 20 28 28 H 1.08996 * 109.47241 * 300.00709 * 1 2 3 29 29 H 1.09001 * 109.46689 * 60.00570 * 1 2 3 30 30 H 1.09000 * 109.46774 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47513 * 295.00616 * 4 2 1 32 32 H 1.09002 * 109.47247 * 55.00214 * 4 2 1 33 33 H 1.09000 * 109.47401 * 94.53311 * 6 5 4 34 34 H 1.09005 * 109.47201 * 214.53387 * 6 5 4 35 35 H 1.09005 * 109.47140 * 334.52961 * 6 5 4 36 36 H 0.97004 * 119.99703 * 180.02562 * 10 9 7 37 37 H 0.96988 * 120.00316 * 264.99824 * 15 2 1 38 38 H 1.09001 * 109.47003 * 60.00312 * 18 16 15 39 39 H 1.08996 * 109.47799 * 300.00252 * 18 16 15 40 40 H 1.08004 * 120.11873 * 359.97438 * 23 22 21 41 41 H 1.08008 * 119.92675 * 179.97438 * 24 23 22 42 42 H 1.07999 * 119.42643 * 180.02562 * 25 24 23 43 43 H 1.07993 * 119.89662 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 7 3.5000 -0.8263 1.1907 6 6 4.1258 -1.9918 0.5615 7 6 4.2798 0.1650 1.7242 8 1 3.8832 0.8073 2.4965 9 6 5.5799 0.3443 1.2721 10 7 5.9919 -0.2796 0.1888 11 14 6.7448 1.4709 2.2011 12 1 6.9134 0.9723 3.5897 13 1 8.0638 1.4903 1.5191 14 1 6.1835 2.8453 2.2334 15 7 2.0184 -0.6908 -1.1961 16 6 2.1471 -0.0184 -2.3571 17 8 1.8583 1.1582 -2.4118 18 6 2.6500 -0.7288 -3.5873 19 6 2.7001 0.2392 -4.7412 20 7 1.6888 0.3953 -5.5222 21 16 2.0792 1.5410 -6.7073 22 6 3.7196 1.8522 -6.1348 23 6 4.7416 2.6856 -6.5675 24 6 5.9324 2.7038 -5.8964 25 6 6.1200 1.8906 -4.7851 26 6 5.1336 1.0647 -4.3428 27 6 3.8906 1.0210 -5.0112 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 1.7515 -0.1582 2.1370 32 1 1.6054 -1.7197 1.2953 33 1 4.3533 -1.7642 -0.4799 34 1 5.0472 -2.2387 1.0891 35 1 3.4426 -2.8400 0.6072 36 1 6.9006 -0.1545 -0.1269 37 1 2.2491 -1.6318 -1.1524 38 1 1.9777 -1.5511 -3.8323 39 1 3.6493 -1.1206 -3.3977 40 1 4.5968 3.3169 -7.4318 41 1 6.7297 3.3510 -6.2310 42 1 7.0654 1.9146 -4.2635 43 1 5.3012 0.4416 -3.4767 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733064930.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:44:56 Heat of formation + Delta-G solvation = 16.314174 kcal Electronic energy + Delta-G solvation = -26645.489134 eV Core-core repulsion = 23009.807185 eV Total energy + Delta-G solvation = -3635.681949 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.34796 -40.38610 -38.22231 -37.56158 -35.70130 -33.27516 -32.51911 -32.00304 -31.49664 -30.41371 -27.91025 -27.36765 -24.80846 -23.99563 -23.55567 -22.44470 -21.47711 -20.81361 -19.54862 -18.72631 -18.20155 -17.41920 -17.20123 -16.69780 -16.47844 -16.11284 -15.95040 -15.55250 -15.44539 -15.18778 -14.88250 -14.67655 -14.58032 -14.25082 -13.74112 -13.58004 -13.27201 -13.09092 -13.06343 -12.86332 -12.78813 -12.63960 -12.63197 -12.54182 -12.26307 -12.01126 -11.81293 -11.79131 -11.68299 -11.64041 -11.01925 -10.75654 -10.57110 -9.99454 -9.90910 -8.93196 -8.65610 -7.76439 -5.21900 -0.57162 0.15737 0.35408 0.67224 0.99289 1.47436 1.48165 1.53216 1.72532 2.38814 2.54718 2.64673 3.20021 3.36960 3.44381 3.74447 3.79535 3.96716 4.05948 4.18231 4.23457 4.28792 4.32716 4.43076 4.45303 4.55094 4.61163 4.77790 4.89031 4.89822 4.94531 4.98610 5.02983 5.20561 5.21658 5.38920 5.39994 5.44068 5.52952 5.70808 5.73049 5.79649 5.85198 6.41077 6.67988 7.24856 7.37568 7.95333 8.36291 9.25431 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.011187 B = 0.004414 C = 0.003428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2502.193567 B = 6341.322607 C = 8166.568130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.125 3.875 3 H 0.035 0.965 4 C 0.144 3.856 5 N -0.610 5.610 6 C 0.172 3.828 7 C -0.264 4.264 8 H 0.060 0.940 9 C -0.039 4.039 10 N -0.920 5.920 11 Si 0.952 3.048 12 H -0.281 1.281 13 H -0.292 1.292 14 H -0.289 1.289 15 N -0.689 5.689 16 C 0.522 3.478 17 O -0.590 6.590 18 C -0.075 4.075 19 C 0.182 3.818 20 N -0.463 5.463 21 S 0.176 5.824 22 C -0.146 4.146 23 C -0.089 4.089 24 C -0.069 4.069 25 C -0.126 4.126 26 C -0.059 4.059 27 C -0.148 4.148 28 H 0.074 0.926 29 H 0.033 0.967 30 H 0.077 0.923 31 H 0.060 0.940 32 H 0.077 0.923 33 H 0.019 0.981 34 H 0.011 0.989 35 H 0.035 0.965 36 H 0.246 0.754 37 H 0.407 0.593 38 H 0.142 0.858 39 H 0.133 0.867 40 H 0.163 0.837 41 H 0.176 0.824 42 H 0.149 0.851 43 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.936 -1.482 -12.064 12.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.017 3.983 3 H 0.053 0.947 4 C 0.017 3.983 5 N -0.333 5.333 6 C 0.028 3.972 7 C -0.395 4.395 8 H 0.078 0.922 9 C -0.235 4.235 10 N -0.567 5.567 11 Si 0.781 3.219 12 H -0.207 1.207 13 H -0.218 1.218 14 H -0.215 1.215 15 N -0.338 5.338 16 C 0.307 3.693 17 O -0.471 6.471 18 C -0.120 4.120 19 C -0.008 4.008 20 N -0.274 5.274 21 S 0.331 5.669 22 C -0.266 4.266 23 C -0.112 4.112 24 C -0.091 4.091 25 C -0.146 4.146 26 C -0.081 4.081 27 C -0.159 4.159 28 H 0.093 0.907 29 H 0.052 0.948 30 H 0.096 0.904 31 H 0.078 0.922 32 H 0.095 0.905 33 H 0.037 0.963 34 H 0.030 0.970 35 H 0.054 0.946 36 H 0.056 0.944 37 H 0.244 0.756 38 H 0.160 0.840 39 H 0.151 0.849 40 H 0.181 0.819 41 H 0.193 0.807 42 H 0.167 0.833 43 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -5.055 -0.681 -13.373 14.313 hybrid contribution 2.282 0.332 1.619 2.818 sum -2.773 -0.348 -11.754 12.082 Atomic orbital electron populations 1.22022 0.94086 1.02841 1.01562 1.21650 0.93711 0.96420 0.86493 0.94708 1.21334 0.83499 0.99177 0.94278 1.44046 1.00649 1.20491 1.68063 1.20675 0.94271 0.85931 0.96353 1.19355 0.95246 1.10820 1.14076 0.92232 1.25529 1.00064 1.00574 0.97341 1.70128 1.16964 1.46686 1.22878 0.85595 0.78675 0.79141 0.78458 1.20702 1.21772 1.21537 1.45665 1.65556 1.14083 1.08535 1.20420 0.77025 0.86707 0.85126 1.90663 1.52611 1.17968 1.85901 1.20552 1.06734 0.97022 0.87662 1.22096 0.88290 0.95505 0.94929 1.75583 1.25986 1.17252 1.08594 1.84371 1.06115 1.41815 1.34586 1.23733 1.00544 1.02390 0.99977 1.20415 0.91202 0.97929 1.01621 1.21513 0.97282 0.96966 0.93305 1.21141 0.99820 0.95995 0.97645 1.20912 0.90789 0.98560 0.97844 1.20271 0.96348 1.00567 0.98668 0.90665 0.94754 0.90361 0.92174 0.90470 0.96294 0.97021 0.94642 0.94417 0.75644 0.84044 0.84911 0.81949 0.80699 0.83281 0.85850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.23 9.48 71.98 0.68 -3.55 16 2 C 0.12 4.54 2.88 44.99 0.13 4.67 16 3 H 0.03 1.62 7.58 -2.39 -0.02 1.60 16 4 C 0.14 5.15 5.33 86.38 0.46 5.61 16 5 N -0.61 -27.57 2.78 -726.94 -2.02 -29.59 16 6 C 0.17 7.32 7.61 127.77 0.97 8.29 16 7 C -0.26 -13.90 9.66 84.03 0.81 -13.08 16 8 H 0.06 3.14 7.85 -2.91 -0.02 3.11 16 9 C -0.04 -2.08 5.13 84.86 0.44 -1.64 16 10 N -0.92 -50.00 10.66 21.65 0.23 -49.77 16 11 Si 0.95 44.23 29.57 68.60 2.03 46.26 16 12 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 13 H -0.29 -13.49 7.11 99.48 0.71 -12.79 16 14 H -0.29 -13.52 7.11 99.48 0.71 -12.82 16 15 N -0.69 -23.62 4.41 -442.53 -1.95 -25.58 16 16 C 0.52 19.73 7.79 87.65 0.68 20.41 16 17 O -0.59 -27.89 15.70 -3.01 -0.05 -27.94 16 18 C -0.08 -2.26 5.97 29.10 0.17 -2.08 16 19 C 0.18 6.18 5.37 44.74 0.24 6.42 16 20 N -0.46 -16.06 11.84 -46.33 -0.55 -16.61 16 21 S 0.18 5.26 23.86 -56.49 -1.35 3.91 16 22 C -0.15 -4.31 6.71 23.03 0.15 -4.16 16 23 C -0.09 -1.97 10.02 22.04 0.22 -1.75 16 24 C -0.07 -1.36 10.00 22.09 0.22 -1.13 16 25 C -0.13 -3.16 9.92 21.94 0.22 -2.94 16 26 C -0.06 -1.85 9.72 22.49 0.22 -1.63 16 27 C -0.15 -4.89 6.04 -20.20 -0.12 -5.02 16 28 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 29 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 31 H 0.06 2.14 8.03 -2.39 -0.02 2.12 16 32 H 0.08 2.25 7.86 -2.39 -0.02 2.23 16 33 H 0.02 0.85 6.90 -2.39 -0.02 0.83 16 34 H 0.01 0.54 7.30 -2.38 -0.02 0.52 16 35 H 0.04 1.20 7.84 -2.38 -0.02 1.18 16 36 H 0.25 13.17 8.31 -92.71 -0.77 12.40 16 37 H 0.41 11.94 7.17 -92.72 -0.66 11.28 16 38 H 0.14 3.31 8.14 -2.39 -0.02 3.29 16 39 H 0.13 3.60 7.55 -2.39 -0.02 3.58 16 40 H 0.16 2.47 8.06 -2.91 -0.02 2.45 16 41 H 0.18 1.98 8.06 -2.91 -0.02 1.95 16 42 H 0.15 3.16 8.06 -2.91 -0.02 3.14 16 43 H 0.12 4.20 7.65 -2.91 -0.02 4.18 16 Total: -1.00 -72.03 372.56 2.21 -69.83 By element: Atomic # 1 Polarization: 20.71 SS G_CDS: 0.37 Total: 21.08 kcal Atomic # 6 Polarization: 2.92 SS G_CDS: 5.50 Total: 8.41 kcal Atomic # 7 Polarization: -117.26 SS G_CDS: -4.29 Total: -121.55 kcal Atomic # 8 Polarization: -27.89 SS G_CDS: -0.05 Total: -27.94 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.26 kcal Atomic # 16 Polarization: 5.26 SS G_CDS: -1.35 Total: 3.91 kcal Total: -72.03 2.21 -69.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733064930.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.142 kcal (2) G-P(sol) polarization free energy of solvation -72.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.827 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds