Wall clock time and date at job start Tue Mar 31 2020 18:29:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 109.47022 * 2 1 4 4 N 1.46903 * 109.46978 * 119.99937 * 2 1 3 5 5 C 1.46898 * 110.99984 * 274.99925 * 4 2 1 6 6 C 1.47208 * 109.46732 * 180.02562 * 5 4 2 7 7 N 4.78313 * 107.36082 * 103.49757 * 2 1 3 8 8 C 1.50698 * 109.47156 * 240.00419 * 2 1 3 9 9 C 1.38227 * 120.00136 * 100.00031 * 8 2 1 10 10 C 1.38244 * 120.00133 * 180.02562 * 9 8 2 11 11 C 1.38232 * 119.99611 * 359.97438 * 10 9 8 12 12 C 1.50703 * 119.99860 * 179.97438 * 11 10 9 13 13 N 1.46505 * 109.47064 * 89.99969 * 12 11 10 14 14 C 1.34771 * 119.99622 * 179.97438 * 13 12 11 15 15 O 1.21280 * 120.00597 * 0.02562 * 14 13 12 16 16 C 1.50701 * 119.99622 * 179.97438 * 14 13 12 17 17 S 1.81002 * 109.47156 * 180.02562 * 16 14 13 18 18 C 1.76204 * 100.00151 * 180.02562 * 17 16 14 19 19 H 1.08000 * 119.99845 * 359.97438 * 18 17 16 20 20 C 1.38796 * 120.00054 * 180.02562 * 18 17 16 21 21 N 1.31631 * 120.00100 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 119.99948 * 179.97438 * 20 18 17 23 23 H 1.48493 * 109.47251 * 59.99888 * 22 20 18 24 24 H 1.48499 * 109.47003 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.47069 * 299.99979 * 22 20 18 26 26 C 1.38234 * 120.00312 * 0.25696 * 11 10 9 27 27 C 1.38239 * 119.99901 * 359.49432 * 26 11 10 28 28 H 1.09000 * 109.47306 * 299.99739 * 1 2 3 29 29 H 1.09000 * 109.47042 * 60.00116 * 1 2 3 30 30 H 1.08996 * 109.47022 * 180.02562 * 1 2 3 31 31 H 1.00901 * 110.99825 * 38.96084 * 4 2 1 32 32 H 1.08997 * 109.47180 * 299.99868 * 5 4 2 33 33 H 1.09000 * 109.47064 * 60.00409 * 5 4 2 34 34 H 1.07996 * 120.00251 * 359.97438 * 9 8 2 35 35 H 1.07998 * 119.99981 * 179.97438 * 10 9 8 36 36 H 1.09002 * 109.47152 * 330.00052 * 12 11 10 37 37 H 1.09001 * 109.46980 * 210.00152 * 12 11 10 38 38 H 0.96996 * 119.99606 * 0.02562 * 13 12 11 39 39 H 1.09001 * 109.47380 * 300.00190 * 16 14 13 40 40 H 1.09002 * 109.47060 * 60.00278 * 16 14 13 41 41 H 0.96999 * 120.00126 * 180.02562 * 21 20 18 42 42 H 1.07998 * 120.00015 * 179.72855 * 26 11 10 43 43 H 1.08001 * 119.99843 * 180.23314 * 27 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 2.0825 0.2226 2.3469 6 6 2.5768 -0.5043 3.5277 7 7 2.9573 -1.0655 4.4391 8 6 2.0324 -0.7103 -1.2305 9 6 2.4587 0.0195 -2.3242 10 6 2.9191 -0.6321 -3.4532 11 6 2.9534 -2.0135 -3.4881 12 6 3.4547 -2.7239 -4.7190 13 7 4.9000 -2.9351 -4.6064 14 6 5.5694 -3.5568 -5.5973 15 8 4.9753 -3.9410 -6.5824 16 6 7.0562 -3.7735 -5.4818 17 16 7.6583 -4.6269 -6.9601 18 6 9.3718 -4.7473 -6.5675 19 1 9.7414 -4.3473 -5.6349 20 6 10.2466 -5.3552 -7.4572 21 7 9.7963 -5.8414 -8.5945 22 14 12.0632 -5.4822 -7.0412 23 1 12.2306 -6.2586 -5.7865 24 1 12.7775 -6.1684 -8.1476 25 1 12.6257 -4.1200 -6.8592 26 6 2.5225 -2.7435 -2.3961 27 6 2.0671 -2.0918 -1.2653 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.4496 -1.4980 1.4100 32 1 2.7589 1.0461 2.1182 33 1 1.0871 0.6163 2.5525 34 1 2.4315 1.0988 -2.2971 35 1 3.2518 -0.0618 -4.3079 36 1 3.2436 -2.1175 -5.5998 37 1 2.9529 -3.6871 -4.8123 38 1 5.3750 -2.6282 -3.8184 39 1 7.5577 -2.8102 -5.3892 40 1 7.2677 -4.3794 -4.6006 41 1 10.4076 -6.2665 -9.2162 42 1 2.5453 -3.8228 -2.4251 43 1 1.7340 -2.6621 -0.4107 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733681078.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:43 Heat of formation + Delta-G solvation = 13.567656 kcal Electronic energy + Delta-G solvation = -23778.902470 eV Core-core repulsion = 20143.101423 eV Total energy + Delta-G solvation = -3635.801047 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.20932 -39.05369 -37.98992 -36.56349 -34.64798 -32.46972 -32.40272 -31.21608 -30.51043 -28.94395 -27.01813 -25.87206 -25.35769 -23.27591 -22.54380 -20.77309 -20.35321 -18.75428 -17.91135 -16.74143 -16.53864 -16.20918 -16.02529 -15.78082 -15.33287 -15.06128 -14.78395 -14.71767 -14.56615 -13.95952 -13.87328 -13.69490 -13.67113 -13.36081 -13.09412 -12.91892 -12.89869 -12.70288 -12.47676 -12.39555 -12.28663 -11.92714 -11.71632 -11.26123 -11.20294 -11.02469 -11.01968 -10.75157 -9.80844 -9.53472 -9.30837 -9.16401 -9.04355 -8.86673 -8.84445 -8.21787 -6.47793 -6.19507 -3.90006 0.93232 1.15881 2.09084 2.26671 3.04833 3.12280 3.24099 3.25331 3.29417 3.32455 3.48521 3.73297 3.91566 4.15436 4.22659 4.38797 4.47833 4.56597 4.58925 4.66770 4.73682 4.76990 5.01817 5.08665 5.15470 5.18747 5.22249 5.23725 5.48563 5.51426 5.55202 5.69220 5.80032 5.84309 5.92244 5.95739 6.14211 6.17349 6.34476 6.38601 6.49838 6.60929 6.70967 7.02767 7.61466 7.74178 8.37222 8.63330 9.25675 10.87837 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.015610 B = 0.001817 C = 0.001670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1793.308739 B =15409.044224 C =16762.177440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.127 3.873 3 H 0.095 0.905 4 N -0.678 5.678 5 C 0.154 3.846 6 C 0.206 3.794 7 N -0.421 5.421 8 C -0.069 4.069 9 C -0.115 4.115 10 C -0.099 4.099 11 C -0.102 4.102 12 C 0.161 3.839 13 N -0.734 5.734 14 C 0.532 3.468 15 O -0.518 6.518 16 C -0.153 4.153 17 S -0.060 6.060 18 C -0.536 4.536 19 H 0.072 0.928 20 C 0.073 3.927 21 N -0.868 5.868 22 Si 0.919 3.081 23 H -0.274 1.274 24 H -0.283 1.283 25 H -0.274 1.274 26 C -0.100 4.100 27 C -0.100 4.100 28 H 0.060 0.940 29 H 0.070 0.930 30 H 0.063 0.937 31 H 0.351 0.649 32 H 0.119 0.881 33 H 0.080 0.920 34 H 0.122 0.878 35 H 0.125 0.875 36 H 0.074 0.926 37 H 0.073 0.927 38 H 0.399 0.601 39 H 0.090 0.910 40 H 0.090 0.910 41 H 0.269 0.731 42 H 0.124 0.876 43 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.617 16.321 19.781 33.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.018 3.982 3 H 0.113 0.887 4 N -0.311 5.311 5 C 0.023 3.977 6 C -0.113 4.113 7 N -0.098 5.098 8 C -0.070 4.070 9 C -0.134 4.134 10 C -0.118 4.118 11 C -0.102 4.102 12 C 0.037 3.963 13 N -0.389 5.389 14 C 0.318 3.682 15 O -0.393 6.393 16 C -0.304 4.304 17 S 0.166 5.834 18 C -0.684 4.684 19 H 0.090 0.910 20 C -0.136 4.136 21 N -0.503 5.503 22 Si 0.745 3.255 23 H -0.199 1.199 24 H -0.208 1.208 25 H -0.199 1.199 26 C -0.119 4.119 27 C -0.119 4.119 28 H 0.079 0.921 29 H 0.089 0.911 30 H 0.082 0.918 31 H 0.170 0.830 32 H 0.137 0.863 33 H 0.097 0.903 34 H 0.140 0.860 35 H 0.143 0.857 36 H 0.092 0.908 37 H 0.092 0.908 38 H 0.233 0.767 39 H 0.108 0.892 40 H 0.108 0.892 41 H 0.079 0.921 42 H 0.142 0.858 43 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -21.343 14.823 19.149 32.279 hybrid contribution 1.027 0.778 1.646 2.090 sum -20.316 15.601 20.795 32.993 Atomic orbital electron populations 1.22522 0.95578 1.03031 1.02924 1.20460 0.93053 0.97547 0.87157 0.88700 1.60493 1.58760 1.09429 1.02397 1.19414 1.01268 0.93944 0.83105 1.28982 0.93634 0.94289 0.94394 1.81270 1.08862 1.07790 1.11896 1.19612 0.99321 0.93795 0.94287 1.20934 0.99631 0.99658 0.93135 1.21082 0.98645 0.93766 0.98274 1.19949 1.00566 0.93895 0.95815 1.20135 0.81449 0.99941 0.94727 1.46068 1.07920 1.62183 1.22743 1.20329 0.89186 0.76533 0.82153 1.90703 1.69587 1.48768 1.30223 1.23533 0.93738 1.05437 1.07657 1.85380 1.06345 1.73423 1.18205 1.22833 0.92903 1.44790 1.07873 0.90972 1.24989 0.99472 0.94649 0.94475 1.70009 1.35703 1.36123 1.08475 0.86225 0.82707 0.78470 0.78108 1.19941 1.20826 1.19946 1.21126 0.97959 1.00121 0.92683 1.20840 0.99729 0.93757 0.97542 0.92109 0.91079 0.91823 0.82976 0.86303 0.90283 0.85982 0.85700 0.90810 0.90832 0.76679 0.89207 0.89208 0.92148 0.85797 0.86185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.38 9.14 37.16 0.34 -0.04 16 2 C 0.13 0.39 2.79 -68.86 -0.19 0.20 16 3 H 0.09 0.19 7.66 -51.93 -0.40 -0.21 16 4 N -0.68 -2.27 5.68 -111.03 -0.63 -2.90 16 5 C 0.15 0.29 5.96 -6.61 -0.04 0.25 16 6 C 0.21 1.25 15.69 -20.76 -0.33 0.92 16 7 N -0.42 -4.15 18.54 42.15 0.78 -3.37 16 8 C -0.07 -0.41 4.96 -104.63 -0.52 -0.93 16 9 C -0.12 -0.74 9.67 -39.58 -0.38 -1.12 16 10 C -0.10 -0.80 9.70 -39.58 -0.38 -1.18 16 11 C -0.10 -0.93 5.25 -104.62 -0.55 -1.48 16 12 C 0.16 1.88 5.80 -5.19 -0.03 1.85 16 13 N -0.73 -9.92 5.55 -61.47 -0.34 -10.26 16 14 C 0.53 9.96 7.85 -10.99 -0.09 9.87 16 15 O -0.52 -11.79 15.86 5.56 0.09 -11.70 16 16 C -0.15 -3.11 6.16 36.01 0.22 -2.89 16 17 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 18 C -0.54 -15.36 9.50 30.94 0.29 -15.07 16 19 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 20 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 21 N -0.87 -26.28 13.22 55.49 0.73 -25.55 16 22 Si 0.92 21.54 29.55 -169.99 -5.02 16.52 16 23 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 24 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 25 H -0.27 -6.27 7.11 56.52 0.40 -5.86 16 26 C -0.10 -0.84 9.70 -39.58 -0.38 -1.23 16 27 C -0.10 -0.69 9.32 -39.58 -0.37 -1.06 16 28 H 0.06 0.05 7.45 -51.93 -0.39 -0.34 16 29 H 0.07 0.18 8.14 -51.93 -0.42 -0.24 16 30 H 0.06 0.17 8.13 -51.93 -0.42 -0.26 16 31 H 0.35 1.02 7.80 -39.29 -0.31 0.72 16 32 H 0.12 0.06 8.05 -51.93 -0.42 -0.35 16 33 H 0.08 -0.04 7.44 -51.93 -0.39 -0.43 16 34 H 0.12 0.54 8.04 -52.49 -0.42 0.12 16 35 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 36 H 0.07 0.90 8.09 -51.93 -0.42 0.48 16 37 H 0.07 0.90 8.08 -51.93 -0.42 0.48 16 38 H 0.40 4.49 8.46 -40.82 -0.35 4.14 16 39 H 0.09 1.69 8.14 -51.91 -0.42 1.26 16 40 H 0.09 1.69 8.14 -51.92 -0.42 1.27 16 41 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 42 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 43 H 0.12 0.66 7.25 -52.49 -0.38 0.28 16 LS Contribution 390.38 15.07 5.88 5.88 Total: -1.00 -37.01 390.38 -9.18 -46.20 By element: Atomic # 1 Polarization: 4.91 SS G_CDS: -5.96 Total: -1.05 kcal Atomic # 6 Polarization: -7.40 SS G_CDS: -2.50 Total: -9.90 kcal Atomic # 7 Polarization: -42.63 SS G_CDS: 0.54 Total: -42.08 kcal Atomic # 8 Polarization: -11.79 SS G_CDS: 0.09 Total: -11.70 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -37.01 -9.18 -46.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733681078.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.765 kcal (2) G-P(sol) polarization free energy of solvation -37.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.198 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds