Wall clock time and date at job start Tue Mar 31 2020 18:29:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 109.47022 * 2 1 4 4 N 1.46903 * 109.46978 * 119.99937 * 2 1 3 5 5 C 1.46898 * 110.99984 * 274.99925 * 4 2 1 6 6 C 1.47208 * 109.46732 * 180.02562 * 5 4 2 7 7 N 4.78313 * 107.36082 * 103.49757 * 2 1 3 8 8 C 1.50698 * 109.47156 * 240.00419 * 2 1 3 9 9 C 1.38227 * 120.00136 * 100.00031 * 8 2 1 10 10 C 1.38244 * 120.00133 * 180.02562 * 9 8 2 11 11 C 1.38232 * 119.99611 * 359.97438 * 10 9 8 12 12 C 1.50703 * 119.99860 * 179.97438 * 11 10 9 13 13 N 1.46505 * 109.47064 * 89.99969 * 12 11 10 14 14 C 1.34771 * 119.99622 * 179.97438 * 13 12 11 15 15 O 1.21280 * 120.00597 * 0.02562 * 14 13 12 16 16 C 1.50701 * 119.99622 * 179.97438 * 14 13 12 17 17 S 1.81002 * 109.47156 * 180.02562 * 16 14 13 18 18 C 1.76204 * 100.00151 * 180.02562 * 17 16 14 19 19 H 1.08000 * 119.99845 * 359.97438 * 18 17 16 20 20 C 1.38796 * 120.00054 * 180.02562 * 18 17 16 21 21 N 1.31631 * 120.00100 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 119.99948 * 179.97438 * 20 18 17 23 23 H 1.48493 * 109.47251 * 59.99888 * 22 20 18 24 24 H 1.48499 * 109.47003 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.47069 * 299.99979 * 22 20 18 26 26 C 1.38234 * 120.00312 * 0.25696 * 11 10 9 27 27 C 1.38239 * 119.99901 * 359.49432 * 26 11 10 28 28 H 1.09000 * 109.47306 * 299.99739 * 1 2 3 29 29 H 1.09000 * 109.47042 * 60.00116 * 1 2 3 30 30 H 1.08996 * 109.47022 * 180.02562 * 1 2 3 31 31 H 1.00901 * 110.99825 * 38.96084 * 4 2 1 32 32 H 1.08997 * 109.47180 * 299.99868 * 5 4 2 33 33 H 1.09000 * 109.47064 * 60.00409 * 5 4 2 34 34 H 1.07996 * 120.00251 * 359.97438 * 9 8 2 35 35 H 1.07998 * 119.99981 * 179.97438 * 10 9 8 36 36 H 1.09002 * 109.47152 * 330.00052 * 12 11 10 37 37 H 1.09001 * 109.46980 * 210.00152 * 12 11 10 38 38 H 0.96996 * 119.99606 * 0.02562 * 13 12 11 39 39 H 1.09001 * 109.47380 * 300.00190 * 16 14 13 40 40 H 1.09002 * 109.47060 * 60.00278 * 16 14 13 41 41 H 0.96999 * 120.00126 * 180.02562 * 21 20 18 42 42 H 1.07998 * 120.00015 * 179.72855 * 26 11 10 43 43 H 1.08001 * 119.99843 * 180.23314 * 27 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 2.0825 0.2226 2.3469 6 6 2.5768 -0.5043 3.5277 7 7 2.9573 -1.0655 4.4391 8 6 2.0324 -0.7103 -1.2305 9 6 2.4587 0.0195 -2.3242 10 6 2.9191 -0.6321 -3.4532 11 6 2.9534 -2.0135 -3.4881 12 6 3.4547 -2.7239 -4.7190 13 7 4.9000 -2.9351 -4.6064 14 6 5.5694 -3.5568 -5.5973 15 8 4.9753 -3.9410 -6.5824 16 6 7.0562 -3.7735 -5.4818 17 16 7.6583 -4.6269 -6.9601 18 6 9.3718 -4.7473 -6.5675 19 1 9.7414 -4.3473 -5.6349 20 6 10.2466 -5.3552 -7.4572 21 7 9.7963 -5.8414 -8.5945 22 14 12.0632 -5.4822 -7.0412 23 1 12.2306 -6.2586 -5.7865 24 1 12.7775 -6.1684 -8.1476 25 1 12.6257 -4.1200 -6.8592 26 6 2.5225 -2.7435 -2.3961 27 6 2.0671 -2.0918 -1.2653 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.4496 -1.4980 1.4100 32 1 2.7589 1.0461 2.1182 33 1 1.0871 0.6163 2.5525 34 1 2.4315 1.0988 -2.2971 35 1 3.2518 -0.0618 -4.3079 36 1 3.2436 -2.1175 -5.5998 37 1 2.9529 -3.6871 -4.8123 38 1 5.3750 -2.6282 -3.8184 39 1 7.5577 -2.8102 -5.3892 40 1 7.2677 -4.3794 -4.6006 41 1 10.4076 -6.2665 -9.2162 42 1 2.5453 -3.8228 -2.4251 43 1 1.7340 -2.6621 -0.4107 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733681078.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:42 Heat of formation + Delta-G solvation = -12.461439 kcal Electronic energy + Delta-G solvation = -23780.031176 eV Core-core repulsion = 20143.101423 eV Total energy + Delta-G solvation = -3636.929753 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.93720 -40.23727 -38.44659 -37.11954 -35.71922 -34.57868 -33.12607 -31.76444 -31.43158 -29.99244 -27.70692 -27.25286 -26.52409 -23.79705 -23.06552 -21.79402 -21.23524 -19.86621 -19.09992 -17.97432 -17.49898 -16.97314 -16.87375 -16.57796 -16.48993 -16.19001 -15.85707 -15.72021 -15.46061 -14.98228 -14.66360 -14.46048 -14.35075 -14.20173 -14.07365 -13.93132 -13.79350 -13.38068 -13.22261 -13.16518 -13.05855 -12.87364 -12.85803 -12.61203 -12.54588 -12.25008 -11.79205 -11.73230 -11.65744 -11.12466 -11.03837 -10.28074 -10.14405 -9.73280 -9.57761 -9.37529 -8.66200 -8.33914 -6.12134 0.33359 0.60043 1.28352 1.44324 1.47662 1.57849 1.60888 1.67697 1.84544 2.27419 2.34098 2.91030 2.99912 3.04336 3.33980 3.48706 3.70312 3.92746 3.96876 4.03057 4.21112 4.24257 4.31071 4.37897 4.50818 4.51327 4.52221 4.63923 4.66123 4.73024 4.82845 4.93467 5.01567 5.14933 5.24895 5.39028 5.39345 5.42206 5.52972 5.66960 5.75191 5.99882 6.16236 6.20246 6.31483 6.49600 6.62722 7.07096 7.22647 8.75015 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.015610 B = 0.001817 C = 0.001670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1793.308739 B =15409.044224 C =16762.177440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.133 3.867 3 H 0.116 0.884 4 N -0.694 5.694 5 C 0.156 3.844 6 C 0.236 3.764 7 N -0.498 5.498 8 C -0.063 4.063 9 C -0.115 4.115 10 C -0.107 4.107 11 C -0.115 4.115 12 C 0.164 3.836 13 N -0.708 5.708 14 C 0.534 3.466 15 O -0.566 6.566 16 C -0.130 4.130 17 S -0.149 6.149 18 C -0.548 4.548 19 H 0.082 0.918 20 C 0.013 3.987 21 N -0.911 5.911 22 Si 0.998 3.002 23 H -0.263 1.263 24 H -0.278 1.278 25 H -0.262 1.262 26 C -0.112 4.112 27 C -0.106 4.106 28 H 0.079 0.921 29 H 0.067 0.933 30 H 0.055 0.945 31 H 0.352 0.648 32 H 0.141 0.859 33 H 0.114 0.886 34 H 0.148 0.852 35 H 0.127 0.873 36 H 0.068 0.932 37 H 0.064 0.936 38 H 0.414 0.586 39 H 0.110 0.890 40 H 0.108 0.892 41 H 0.271 0.729 42 H 0.120 0.880 43 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.814 18.801 22.203 36.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.024 3.976 3 H 0.134 0.866 4 N -0.327 5.327 5 C 0.026 3.974 6 C -0.081 4.081 7 N -0.177 5.177 8 C -0.064 4.064 9 C -0.133 4.133 10 C -0.126 4.126 11 C -0.116 4.116 12 C 0.041 3.959 13 N -0.362 5.362 14 C 0.320 3.680 15 O -0.444 6.444 16 C -0.281 4.281 17 S 0.078 5.922 18 C -0.696 4.696 19 H 0.100 0.900 20 C -0.192 4.192 21 N -0.547 5.547 22 Si 0.820 3.180 23 H -0.187 1.187 24 H -0.203 1.203 25 H -0.186 1.186 26 C -0.130 4.130 27 C -0.124 4.124 28 H 0.098 0.902 29 H 0.086 0.914 30 H 0.074 0.926 31 H 0.171 0.829 32 H 0.159 0.841 33 H 0.132 0.868 34 H 0.165 0.835 35 H 0.145 0.855 36 H 0.086 0.914 37 H 0.082 0.918 38 H 0.250 0.750 39 H 0.128 0.872 40 H 0.126 0.874 41 H 0.080 0.920 42 H 0.138 0.862 43 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -21.563 17.337 21.625 35.117 hybrid contribution 0.925 0.105 0.976 1.349 sum -20.638 17.442 22.601 35.227 Atomic orbital electron populations 1.22491 0.94654 1.02840 1.03731 1.20461 0.93569 0.97926 0.85612 0.86639 1.60419 1.59265 1.10019 1.02964 1.19759 1.03394 0.93334 0.80940 1.29781 0.91600 0.92653 0.94089 1.81299 1.11629 1.10248 1.14494 1.19998 0.97607 0.93471 0.95314 1.21227 0.98675 1.01006 0.92436 1.21207 0.98929 0.93246 0.99186 1.19690 1.02515 0.94391 0.95008 1.20174 0.79775 0.99794 0.96199 1.45855 1.08833 1.59877 1.21611 1.20070 0.88584 0.76812 0.82526 1.90690 1.70185 1.51204 1.32351 1.23375 0.94937 1.05574 1.04188 1.85550 1.07592 1.75325 1.23764 1.23176 0.93041 1.44961 1.08379 0.89956 1.26130 1.04994 0.93914 0.94128 1.70176 1.37652 1.37088 1.09775 0.85005 0.75777 0.79050 0.78173 1.18737 1.20344 1.18626 1.21191 0.98553 1.00125 0.93173 1.21032 0.99482 0.94617 0.97295 0.90176 0.91411 0.92579 0.82870 0.84135 0.86834 0.83456 0.85499 0.91406 0.91760 0.74973 0.87206 0.87371 0.91980 0.86209 0.85024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.09 9.14 71.98 0.66 0.57 16 2 C 0.13 0.28 2.79 44.17 0.12 0.41 16 3 H 0.12 -0.16 7.66 -2.39 -0.02 -0.18 16 4 N -0.69 -2.23 5.68 -505.20 -2.87 -5.10 16 5 C 0.16 -0.03 5.96 84.50 0.50 0.48 16 6 C 0.24 2.42 15.69 89.44 1.40 3.83 16 7 N -0.50 -9.65 18.54 20.01 0.37 -9.28 16 8 C -0.06 -0.55 4.96 -19.87 -0.10 -0.65 16 9 C -0.12 -1.14 9.67 22.27 0.22 -0.93 16 10 C -0.11 -1.55 9.70 22.27 0.22 -1.33 16 11 C -0.12 -2.03 5.25 -19.87 -0.10 -2.13 16 12 C 0.16 3.83 5.80 85.63 0.50 4.33 16 13 N -0.71 -18.72 5.55 -466.78 -2.59 -21.31 16 14 C 0.53 20.12 7.85 87.66 0.69 20.81 16 15 O -0.57 -26.62 15.86 -3.03 -0.05 -26.66 16 16 C -0.13 -5.23 6.16 71.24 0.44 -4.79 16 17 S -0.15 -8.40 20.57 -56.49 -1.16 -9.56 16 18 C -0.55 -31.60 9.50 67.95 0.65 -30.96 16 19 H 0.08 4.40 7.80 -2.91 -0.02 4.38 16 20 C 0.01 0.75 5.49 84.86 0.47 1.22 16 21 N -0.91 -56.32 13.22 21.65 0.29 -56.04 16 22 Si 1.00 43.94 29.55 68.60 2.03 45.96 16 23 H -0.26 -11.00 7.11 99.48 0.71 -10.29 16 24 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 25 H -0.26 -10.91 7.11 99.48 0.71 -10.20 16 26 C -0.11 -1.78 9.70 22.27 0.22 -1.57 16 27 C -0.11 -1.27 9.32 22.27 0.21 -1.06 16 28 H 0.08 -0.23 7.45 -2.39 -0.02 -0.25 16 29 H 0.07 0.12 8.14 -2.39 -0.02 0.10 16 30 H 0.06 0.14 8.13 -2.39 -0.02 0.12 16 31 H 0.35 1.05 7.80 -89.69 -0.70 0.35 16 32 H 0.14 -0.53 8.05 -2.39 -0.02 -0.55 16 33 H 0.11 -0.70 7.44 -2.39 -0.02 -0.71 16 34 H 0.15 0.69 8.04 -2.91 -0.02 0.67 16 35 H 0.13 1.72 8.06 -2.91 -0.02 1.70 16 36 H 0.07 1.68 8.09 -2.39 -0.02 1.67 16 37 H 0.06 1.64 8.08 -2.39 -0.02 1.62 16 38 H 0.41 8.65 8.46 -92.71 -0.78 7.87 16 39 H 0.11 3.99 8.14 -2.40 -0.02 3.97 16 40 H 0.11 3.96 8.14 -2.39 -0.02 3.94 16 41 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 42 H 0.12 1.92 8.06 -2.91 -0.02 1.90 16 43 H 0.13 1.21 7.25 -2.91 -0.02 1.19 16 Total: -1.00 -84.54 390.38 1.66 -82.88 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: -0.44 Total: 10.89 kcal Atomic # 6 Polarization: -17.86 SS G_CDS: 6.08 Total: -11.78 kcal Atomic # 7 Polarization: -86.93 SS G_CDS: -4.80 Total: -91.73 kcal Atomic # 8 Polarization: -26.62 SS G_CDS: -0.05 Total: -26.66 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.96 kcal Atomic # 16 Polarization: -8.40 SS G_CDS: -1.16 Total: -9.56 kcal Total: -84.54 1.66 -82.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733681078.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.422 kcal (2) G-P(sol) polarization free energy of solvation -84.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds