Wall clock time and date at job start Tue Mar 31 2020 18:29:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09005 * 109.46697 * 2 1 4 4 N 1.46903 * 109.47237 * 240.00589 * 2 1 3 5 5 C 1.46898 * 111.00006 * 84.99488 * 4 2 1 6 6 C 1.47198 * 109.47123 * 180.02562 * 5 4 2 7 7 N 4.78314 * 107.35918 * 256.50797 * 2 1 3 8 8 C 1.50690 * 109.47554 * 120.00381 * 2 1 3 9 9 C 1.38246 * 120.00078 * 260.00231 * 8 2 1 10 10 C 1.38233 * 119.99825 * 179.97438 * 9 8 2 11 11 C 1.38231 * 120.00354 * 0.02562 * 10 9 8 12 12 C 1.50696 * 120.00100 * 179.97438 * 11 10 9 13 13 N 1.46506 * 109.47148 * 89.99754 * 12 11 10 14 14 C 1.34773 * 119.99969 * 179.72251 * 13 12 11 15 15 O 1.21281 * 120.00220 * 0.02562 * 14 13 12 16 16 C 1.50706 * 120.00080 * 180.02562 * 14 13 12 17 17 S 1.80989 * 109.47203 * 180.02562 * 16 14 13 18 18 C 1.76206 * 100.00010 * 180.02562 * 17 16 14 19 19 H 1.08001 * 119.99621 * 359.97438 * 18 17 16 20 20 C 1.38794 * 119.99924 * 180.02562 * 18 17 16 21 21 N 1.31633 * 120.00085 * 180.02562 * 20 18 17 22 22 Si 1.86797 * 120.00415 * 359.97438 * 20 18 17 23 23 H 1.48508 * 109.47144 * 90.00296 * 22 20 18 24 24 H 1.48502 * 109.47646 * 210.00409 * 22 20 18 25 25 H 1.48502 * 109.47363 * 330.00583 * 22 20 18 26 26 C 1.38233 * 119.99938 * 0.25276 * 11 10 9 27 27 C 1.38234 * 120.00333 * 79.97696 * 8 2 1 28 28 H 1.08999 * 109.46968 * 299.99317 * 1 2 3 29 29 H 1.08996 * 109.47496 * 60.00095 * 1 2 3 30 30 H 1.09005 * 109.46697 * 180.02562 * 1 2 3 31 31 H 1.00901 * 110.99657 * 321.04709 * 4 2 1 32 32 H 1.09002 * 109.47016 * 299.99933 * 5 4 2 33 33 H 1.09000 * 109.47298 * 60.00271 * 5 4 2 34 34 H 1.07996 * 119.99765 * 359.97438 * 9 8 2 35 35 H 1.08005 * 119.99712 * 179.97438 * 10 9 8 36 36 H 1.09001 * 109.47545 * 330.00225 * 12 11 10 37 37 H 1.08998 * 109.47669 * 210.00168 * 12 11 10 38 38 H 0.97005 * 119.99811 * 0.02562 * 13 12 11 39 39 H 1.09004 * 109.46762 * 300.00389 * 16 14 13 40 40 H 1.08998 * 109.46924 * 59.99727 * 16 14 13 41 41 H 0.96996 * 120.00680 * 179.97438 * 21 20 18 42 42 H 1.08004 * 120.00309 * 179.73170 * 26 11 10 43 43 H 1.08005 * 119.99702 * 0.02562 * 27 8 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6924 -1.1995 5 6 2.0824 0.2228 -2.3469 6 6 2.5756 -0.5042 -3.5280 7 7 2.9571 -1.0651 -4.4393 8 6 2.0324 -0.7104 1.2303 9 6 2.4589 0.0194 2.3242 10 6 2.9192 -0.6324 3.4530 11 6 2.9537 -2.0138 3.4878 12 6 3.4562 -2.7242 4.7181 13 7 2.3365 -2.9735 5.6295 14 6 2.5487 -3.6066 6.8003 15 8 3.6666 -3.9695 7.0995 16 6 1.3969 -3.8636 7.7376 17 16 1.9991 -4.7233 9.2120 18 6 0.4900 -4.8918 10.1058 19 1 -0.4297 -4.5076 9.6898 20 6 0.4834 -5.5172 11.3448 21 7 -0.6441 -5.6434 12.0123 22 14 2.0741 -6.1810 12.0646 23 1 2.7279 -5.1247 12.8786 24 1 1.7768 -7.3551 12.9239 25 1 2.9826 -6.5907 10.9637 26 6 2.5328 -2.7435 2.3918 27 6 2.0665 -2.0919 1.2653 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.4496 -1.4978 -1.4102 32 1 1.0870 0.6164 -2.5525 33 1 2.7588 1.0464 -2.1182 34 1 2.4323 1.0987 2.2969 35 1 3.2527 -0.0622 4.3075 36 1 4.2000 -2.1037 5.2178 37 1 3.9087 -3.6732 4.4305 38 1 1.4417 -2.6869 5.3884 39 1 0.9471 -2.9145 8.0291 40 1 0.6511 -4.4803 7.2361 41 1 -0.6489 -6.0808 12.8781 42 1 2.5638 -3.8228 2.4173 43 1 1.7333 -2.6621 0.4107 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733681079.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:47 Heat of formation + Delta-G solvation = 13.522503 kcal Electronic energy + Delta-G solvation = -23772.683387 eV Core-core repulsion = 20136.880382 eV Total energy + Delta-G solvation = -3635.803005 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.24868 -39.17078 -38.03036 -36.59958 -34.73873 -32.52411 -32.43126 -31.24645 -30.58592 -29.06238 -27.03932 -25.92295 -25.52528 -23.31042 -22.58043 -20.80646 -20.48765 -18.78250 -17.97288 -16.77993 -16.56670 -16.32300 -16.06548 -15.85563 -15.39938 -15.12908 -14.93956 -14.80963 -14.54635 -13.94940 -13.83619 -13.73099 -13.70934 -13.40544 -13.24388 -13.02318 -12.99158 -12.79339 -12.61201 -12.31849 -12.29754 -12.03823 -11.84766 -11.31719 -11.25230 -11.23061 -11.00470 -10.60707 -9.86833 -9.64589 -9.33736 -9.19548 -9.01980 -8.96049 -8.89437 -8.49623 -6.91464 -6.28753 -4.00486 0.89703 1.12977 2.05536 2.22923 2.78327 2.97989 3.18326 3.29058 3.33618 3.49804 3.51472 3.70064 3.82024 4.13181 4.33548 4.36958 4.45751 4.52379 4.57651 4.63939 4.70851 4.74194 4.76222 5.01274 5.07686 5.10390 5.19564 5.20252 5.28137 5.46444 5.50986 5.59675 5.74431 5.76366 5.78708 5.93042 6.01976 6.11155 6.31881 6.34451 6.47259 6.49993 6.67506 6.99029 7.61996 7.94265 8.41706 8.49064 9.17508 10.80459 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.031077 B = 0.001646 C = 0.001619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.776489 B =17011.818020 C =17293.150646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.127 3.873 3 H 0.095 0.905 4 N -0.678 5.678 5 C 0.154 3.846 6 C 0.207 3.793 7 N -0.422 5.422 8 C -0.068 4.068 9 C -0.115 4.115 10 C -0.099 4.099 11 C -0.103 4.103 12 C 0.161 3.839 13 N -0.732 5.732 14 C 0.530 3.470 15 O -0.520 6.520 16 C -0.124 4.124 17 S -0.142 6.142 18 C -0.522 4.522 19 H 0.088 0.912 20 C 0.096 3.904 21 N -0.881 5.881 22 Si 0.857 3.143 23 H -0.267 1.267 24 H -0.274 1.274 25 H -0.235 1.235 26 C -0.100 4.100 27 C -0.100 4.100 28 H 0.071 0.929 29 H 0.060 0.940 30 H 0.063 0.937 31 H 0.351 0.649 32 H 0.080 0.920 33 H 0.119 0.881 34 H 0.123 0.877 35 H 0.125 0.875 36 H 0.074 0.926 37 H 0.074 0.926 38 H 0.400 0.600 39 H 0.097 0.903 40 H 0.097 0.903 41 H 0.271 0.729 42 H 0.124 0.876 43 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.833 16.035 -27.916 32.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.018 3.982 3 H 0.113 0.887 4 N -0.311 5.311 5 C 0.022 3.978 6 C -0.112 4.112 7 N -0.099 5.099 8 C -0.069 4.069 9 C -0.134 4.134 10 C -0.117 4.117 11 C -0.103 4.103 12 C 0.038 3.962 13 N -0.387 5.387 14 C 0.316 3.684 15 O -0.394 6.394 16 C -0.274 4.274 17 S 0.084 5.916 18 C -0.669 4.669 19 H 0.106 0.894 20 C -0.113 4.113 21 N -0.517 5.517 22 Si 0.681 3.319 23 H -0.192 1.192 24 H -0.199 1.199 25 H -0.159 1.159 26 C -0.118 4.118 27 C -0.119 4.119 28 H 0.090 0.910 29 H 0.079 0.921 30 H 0.082 0.918 31 H 0.170 0.830 32 H 0.098 0.902 33 H 0.137 0.863 34 H 0.141 0.859 35 H 0.143 0.857 36 H 0.093 0.907 37 H 0.092 0.908 38 H 0.234 0.766 39 H 0.115 0.885 40 H 0.115 0.885 41 H 0.080 0.920 42 H 0.142 0.858 43 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 4.853 14.606 -28.455 32.351 hybrid contribution -2.362 0.516 0.210 2.427 sum 2.491 15.122 -28.245 32.135 Atomic orbital electron populations 1.22526 0.95468 1.03118 1.03005 1.20463 0.93144 0.97512 0.87114 0.88697 1.60511 1.58753 1.09452 1.02403 1.19418 1.01332 0.93931 0.83098 1.28989 0.93595 0.94263 0.94387 1.81269 1.08925 1.07828 1.11886 1.19622 0.99167 0.93794 0.94323 1.20940 0.99603 0.99689 0.93126 1.21077 0.98762 0.93754 0.98133 1.19922 1.00943 0.93892 0.95589 1.20142 0.89230 0.99863 0.86977 1.46029 1.11382 1.61738 1.19537 1.20303 0.90320 0.76658 0.81099 1.90704 1.24551 1.49812 1.74372 1.23278 0.99351 1.05114 0.99677 1.84792 1.16425 1.74430 1.15905 1.22322 0.93418 1.44794 1.06393 0.89396 1.24707 0.96686 0.94298 0.95576 1.69937 1.25845 1.41889 1.14047 0.86736 0.84116 0.79687 0.81316 1.19205 1.19947 1.15916 1.21123 0.97808 1.00103 0.92804 1.20845 0.99615 0.93767 0.97648 0.91005 0.92079 0.91768 0.82953 0.90234 0.86305 0.85949 0.85703 0.90748 0.90762 0.76578 0.88493 0.88461 0.91950 0.85797 0.86155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.41 9.14 37.16 0.34 -0.07 16 2 C 0.13 0.37 2.79 -68.87 -0.19 0.18 16 3 H 0.09 0.16 7.66 -51.93 -0.40 -0.23 16 4 N -0.68 -2.07 5.68 -111.04 -0.63 -2.70 16 5 C 0.15 0.24 5.96 -6.61 -0.04 0.20 16 6 C 0.21 1.16 15.69 -20.76 -0.33 0.84 16 7 N -0.42 -3.95 18.54 42.16 0.78 -3.16 16 8 C -0.07 -0.39 4.96 -104.63 -0.52 -0.90 16 9 C -0.12 -0.71 9.67 -39.58 -0.38 -1.09 16 10 C -0.10 -0.76 9.70 -39.59 -0.38 -1.14 16 11 C -0.10 -0.90 5.25 -104.63 -0.55 -1.45 16 12 C 0.16 1.77 5.80 -5.19 -0.03 1.74 16 13 N -0.73 -9.12 5.55 -61.47 -0.34 -9.46 16 14 C 0.53 9.26 7.85 -10.98 -0.09 9.17 16 15 O -0.52 -11.11 15.86 5.56 0.09 -11.02 16 16 C -0.12 -2.36 6.16 36.01 0.22 -2.14 16 17 S -0.14 -3.58 18.55 -107.50 -1.99 -5.58 16 18 C -0.52 -14.98 10.04 30.94 0.31 -14.67 16 19 H 0.09 2.63 8.03 -52.49 -0.42 2.20 16 20 C 0.10 2.80 5.50 -17.43 -0.10 2.70 16 21 N -0.88 -26.47 13.97 55.49 0.78 -25.70 16 22 Si 0.86 21.73 27.74 -169.99 -4.71 17.02 16 23 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 24 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 25 H -0.24 -5.96 6.74 56.52 0.38 -5.58 16 26 C -0.10 -0.80 9.70 -39.58 -0.38 -1.19 16 27 C -0.10 -0.67 9.32 -39.58 -0.37 -1.04 16 28 H 0.07 0.21 8.14 -51.93 -0.42 -0.22 16 29 H 0.06 0.06 7.45 -51.93 -0.39 -0.33 16 30 H 0.06 0.18 8.13 -51.93 -0.42 -0.24 16 31 H 0.35 0.95 7.80 -39.29 -0.31 0.64 16 32 H 0.08 -0.05 7.44 -51.93 -0.39 -0.44 16 33 H 0.12 0.01 8.06 -51.93 -0.42 -0.41 16 34 H 0.12 0.51 8.04 -52.49 -0.42 0.09 16 35 H 0.12 0.88 8.06 -52.48 -0.42 0.46 16 36 H 0.07 0.86 8.09 -51.93 -0.42 0.44 16 37 H 0.07 0.87 8.08 -51.93 -0.42 0.45 16 38 H 0.40 4.02 8.46 -40.82 -0.35 3.68 16 39 H 0.10 1.71 8.14 -51.91 -0.42 1.29 16 40 H 0.10 1.72 8.14 -51.92 -0.42 1.30 16 41 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 42 H 0.12 0.95 8.06 -52.48 -0.42 0.52 16 43 H 0.12 0.64 7.25 -52.48 -0.38 0.26 16 LS Contribution 387.69 15.07 5.84 5.84 Total: -1.00 -36.42 387.69 -8.67 -45.09 By element: Atomic # 1 Polarization: 4.52 SS G_CDS: -6.00 Total: -1.48 kcal Atomic # 6 Polarization: -6.37 SS G_CDS: -2.48 Total: -8.85 kcal Atomic # 7 Polarization: -41.61 SS G_CDS: 0.59 Total: -41.02 kcal Atomic # 8 Polarization: -11.11 SS G_CDS: 0.09 Total: -11.02 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.71 Total: 17.02 kcal Atomic # 16 Polarization: -3.58 SS G_CDS: -1.99 Total: -5.58 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -36.42 -8.67 -45.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733681079.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.617 kcal (2) G-P(sol) polarization free energy of solvation -36.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.094 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds