Wall clock time and date at job start Tue Mar 31 2020 18:29:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09005 * 109.46697 * 2 1 4 4 N 1.46903 * 109.47237 * 240.00589 * 2 1 3 5 5 C 1.46898 * 111.00006 * 84.99488 * 4 2 1 6 6 C 1.47198 * 109.47123 * 180.02562 * 5 4 2 7 7 N 4.78314 * 107.35918 * 256.50797 * 2 1 3 8 8 C 1.50690 * 109.47554 * 120.00381 * 2 1 3 9 9 C 1.38246 * 120.00078 * 260.00231 * 8 2 1 10 10 C 1.38233 * 119.99825 * 179.97438 * 9 8 2 11 11 C 1.38231 * 120.00354 * 0.02562 * 10 9 8 12 12 C 1.50696 * 120.00100 * 179.97438 * 11 10 9 13 13 N 1.46506 * 109.47148 * 89.99754 * 12 11 10 14 14 C 1.34773 * 119.99969 * 179.72251 * 13 12 11 15 15 O 1.21281 * 120.00220 * 0.02562 * 14 13 12 16 16 C 1.50706 * 120.00080 * 180.02562 * 14 13 12 17 17 S 1.80989 * 109.47203 * 180.02562 * 16 14 13 18 18 C 1.76206 * 100.00010 * 180.02562 * 17 16 14 19 19 H 1.08001 * 119.99621 * 359.97438 * 18 17 16 20 20 C 1.38794 * 119.99924 * 180.02562 * 18 17 16 21 21 N 1.31633 * 120.00085 * 180.02562 * 20 18 17 22 22 Si 1.86797 * 120.00415 * 359.97438 * 20 18 17 23 23 H 1.48508 * 109.47144 * 90.00296 * 22 20 18 24 24 H 1.48502 * 109.47646 * 210.00409 * 22 20 18 25 25 H 1.48502 * 109.47363 * 330.00583 * 22 20 18 26 26 C 1.38233 * 119.99938 * 0.25276 * 11 10 9 27 27 C 1.38234 * 120.00333 * 79.97696 * 8 2 1 28 28 H 1.08999 * 109.46968 * 299.99317 * 1 2 3 29 29 H 1.08996 * 109.47496 * 60.00095 * 1 2 3 30 30 H 1.09005 * 109.46697 * 180.02562 * 1 2 3 31 31 H 1.00901 * 110.99657 * 321.04709 * 4 2 1 32 32 H 1.09002 * 109.47016 * 299.99933 * 5 4 2 33 33 H 1.09000 * 109.47298 * 60.00271 * 5 4 2 34 34 H 1.07996 * 119.99765 * 359.97438 * 9 8 2 35 35 H 1.08005 * 119.99712 * 179.97438 * 10 9 8 36 36 H 1.09001 * 109.47545 * 330.00225 * 12 11 10 37 37 H 1.08998 * 109.47669 * 210.00168 * 12 11 10 38 38 H 0.97005 * 119.99811 * 0.02562 * 13 12 11 39 39 H 1.09004 * 109.46762 * 300.00389 * 16 14 13 40 40 H 1.08998 * 109.46924 * 59.99727 * 16 14 13 41 41 H 0.96996 * 120.00680 * 179.97438 * 21 20 18 42 42 H 1.08004 * 120.00309 * 179.73170 * 26 11 10 43 43 H 1.08005 * 119.99702 * 0.02562 * 27 8 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6924 -1.1995 5 6 2.0824 0.2228 -2.3469 6 6 2.5756 -0.5042 -3.5280 7 7 2.9571 -1.0651 -4.4393 8 6 2.0324 -0.7104 1.2303 9 6 2.4589 0.0194 2.3242 10 6 2.9192 -0.6324 3.4530 11 6 2.9537 -2.0138 3.4878 12 6 3.4562 -2.7242 4.7181 13 7 2.3365 -2.9735 5.6295 14 6 2.5487 -3.6066 6.8003 15 8 3.6666 -3.9695 7.0995 16 6 1.3969 -3.8636 7.7376 17 16 1.9991 -4.7233 9.2120 18 6 0.4900 -4.8918 10.1058 19 1 -0.4297 -4.5076 9.6898 20 6 0.4834 -5.5172 11.3448 21 7 -0.6441 -5.6434 12.0123 22 14 2.0741 -6.1810 12.0646 23 1 2.7279 -5.1247 12.8786 24 1 1.7768 -7.3551 12.9239 25 1 2.9826 -6.5907 10.9637 26 6 2.5328 -2.7435 2.3918 27 6 2.0665 -2.0919 1.2653 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.4496 -1.4978 -1.4102 32 1 1.0870 0.6164 -2.5525 33 1 2.7588 1.0464 -2.1182 34 1 2.4323 1.0987 2.2969 35 1 3.2527 -0.0622 4.3075 36 1 4.2000 -2.1037 5.2178 37 1 3.9087 -3.6732 4.4305 38 1 1.4417 -2.6869 5.3884 39 1 0.9471 -2.9145 8.0291 40 1 0.6511 -4.4803 7.2361 41 1 -0.6489 -6.0808 12.8781 42 1 2.5638 -3.8228 2.4173 43 1 1.7333 -2.6621 0.4107 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733681079.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:46 Heat of formation + Delta-G solvation = -12.048254 kcal Electronic energy + Delta-G solvation = -23773.792218 eV Core-core repulsion = 20136.880382 eV Total energy + Delta-G solvation = -3636.911836 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.95543 -40.25826 -38.45192 -37.12456 -35.73668 -34.66326 -33.14009 -31.76432 -31.47423 -30.02235 -27.87060 -27.26877 -26.55513 -23.80194 -23.07265 -21.83209 -21.24078 -19.91874 -19.10309 -18.02172 -17.52416 -17.08577 -16.98587 -16.58426 -16.50723 -16.20134 -15.78927 -15.68216 -15.47616 -14.99935 -14.89109 -14.59354 -14.37152 -14.21571 -14.13969 -13.94980 -13.82010 -13.44683 -13.34143 -13.26648 -13.04119 -12.98998 -12.76163 -12.65620 -12.55364 -12.30197 -11.86845 -11.77499 -11.65456 -11.16208 -11.08091 -10.52808 -10.16169 -9.73300 -9.58576 -9.38009 -8.98750 -8.50705 -6.21557 0.32771 0.60111 1.01420 1.32288 1.48279 1.56767 1.57941 1.67026 1.83828 2.24884 2.30228 2.71835 2.87636 2.91488 3.04533 3.48316 3.69586 3.89921 3.94644 3.98479 4.20787 4.22091 4.27339 4.37712 4.47921 4.50715 4.51941 4.63477 4.65513 4.72634 4.82723 4.93272 5.01064 5.14980 5.24814 5.36560 5.39278 5.52861 5.66856 5.71539 5.74726 5.99294 6.12189 6.16122 6.30248 6.46831 6.61967 6.94584 7.18357 8.61630 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.031077 B = 0.001646 C = 0.001619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.776489 B =17011.818020 C =17293.150646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.133 3.867 3 H 0.116 0.884 4 N -0.693 5.693 5 C 0.156 3.844 6 C 0.237 3.763 7 N -0.497 5.497 8 C -0.063 4.063 9 C -0.116 4.116 10 C -0.107 4.107 11 C -0.116 4.116 12 C 0.164 3.836 13 N -0.707 5.707 14 C 0.535 3.465 15 O -0.564 6.564 16 C -0.111 4.111 17 S -0.176 6.176 18 C -0.530 4.530 19 H 0.063 0.937 20 C 0.047 3.953 21 N -0.917 5.917 22 Si 0.914 3.086 23 H -0.262 1.262 24 H -0.259 1.259 25 H -0.237 1.237 26 C -0.111 4.111 27 C -0.107 4.107 28 H 0.066 0.934 29 H 0.079 0.921 30 H 0.055 0.945 31 H 0.352 0.648 32 H 0.113 0.887 33 H 0.142 0.858 34 H 0.147 0.853 35 H 0.128 0.872 36 H 0.069 0.931 37 H 0.065 0.935 38 H 0.415 0.585 39 H 0.114 0.886 40 H 0.113 0.887 41 H 0.277 0.723 42 H 0.121 0.879 43 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.727 18.050 -29.486 34.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.024 3.976 3 H 0.134 0.866 4 N -0.326 5.326 5 C 0.025 3.975 6 C -0.081 4.081 7 N -0.176 5.176 8 C -0.064 4.064 9 C -0.134 4.134 10 C -0.125 4.125 11 C -0.116 4.116 12 C 0.041 3.959 13 N -0.360 5.360 14 C 0.321 3.679 15 O -0.442 6.442 16 C -0.262 4.262 17 S 0.051 5.949 18 C -0.677 4.677 19 H 0.081 0.919 20 C -0.159 4.159 21 N -0.555 5.555 22 Si 0.736 3.264 23 H -0.187 1.187 24 H -0.183 1.183 25 H -0.161 1.161 26 C -0.130 4.130 27 C -0.125 4.125 28 H 0.085 0.915 29 H 0.098 0.902 30 H 0.074 0.926 31 H 0.171 0.829 32 H 0.130 0.870 33 H 0.160 0.840 34 H 0.165 0.835 35 H 0.146 0.854 36 H 0.087 0.913 37 H 0.083 0.917 38 H 0.251 0.749 39 H 0.132 0.868 40 H 0.131 0.869 41 H 0.086 0.914 42 H 0.139 0.861 43 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 4.711 16.649 -30.062 34.686 hybrid contribution -2.418 0.019 0.533 2.476 sum 2.293 16.668 -29.529 33.986 Atomic orbital electron populations 1.22498 0.94776 1.02824 1.03705 1.20458 0.93471 0.97952 0.85682 0.86613 1.60440 1.59192 1.10006 1.02950 1.19760 1.03405 0.93363 0.80963 1.29761 0.91596 0.92654 0.94080 1.81297 1.11640 1.10235 1.14437 1.19996 0.97587 0.93496 0.95323 1.21231 0.98707 1.01002 0.92494 1.21211 0.98965 0.93298 0.99054 1.19690 1.02816 0.94350 0.94782 1.20169 0.88500 0.99676 0.87507 1.45832 1.12806 1.59472 1.17898 1.19977 0.88951 0.76960 0.82040 1.90693 1.25813 1.52125 1.75576 1.23268 1.00291 1.05339 0.97260 1.84718 1.15263 1.75957 1.18988 1.22468 0.93980 1.44321 1.06951 0.91923 1.25545 0.99673 0.94604 0.96036 1.70013 1.27742 1.42929 1.14775 0.85875 0.80307 0.79629 0.80607 1.18651 1.18345 1.16140 1.21197 0.98359 1.00148 0.93303 1.21036 0.99427 0.94605 0.97457 0.91478 0.90215 0.92612 0.82895 0.86951 0.84041 0.83518 0.85408 0.91262 0.91656 0.74852 0.86772 0.86857 0.91374 0.86131 0.85092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.17 9.14 71.98 0.66 0.49 16 2 C 0.13 0.26 2.79 44.17 0.12 0.39 16 3 H 0.12 -0.19 7.66 -2.38 -0.02 -0.21 16 4 N -0.69 -1.95 5.68 -505.21 -2.87 -4.82 16 5 C 0.16 -0.10 5.96 84.50 0.50 0.40 16 6 C 0.24 2.25 15.69 89.44 1.40 3.66 16 7 N -0.50 -9.19 18.54 20.01 0.37 -8.82 16 8 C -0.06 -0.53 4.96 -19.87 -0.10 -0.63 16 9 C -0.12 -1.09 9.67 22.27 0.22 -0.87 16 10 C -0.11 -1.44 9.70 22.27 0.22 -1.22 16 11 C -0.12 -1.89 5.25 -19.87 -0.10 -2.00 16 12 C 0.16 3.53 5.80 85.63 0.50 4.02 16 13 N -0.71 -16.80 5.55 -466.78 -2.59 -19.39 16 14 C 0.54 18.30 7.85 87.66 0.69 18.98 16 15 O -0.56 -24.10 15.86 -3.03 -0.05 -24.15 16 16 C -0.11 -4.13 6.16 71.24 0.44 -3.70 16 17 S -0.18 -8.88 18.55 -56.49 -1.05 -9.92 16 18 C -0.53 -30.78 10.04 67.95 0.68 -30.10 16 19 H 0.06 3.83 8.03 -2.91 -0.02 3.81 16 20 C 0.05 2.75 5.50 84.86 0.47 3.21 16 21 N -0.92 -55.66 13.97 21.65 0.30 -55.35 16 22 Si 0.91 44.96 27.74 68.60 1.90 46.86 16 23 H -0.26 -12.55 7.11 99.48 0.71 -11.85 16 24 H -0.26 -11.95 7.11 99.48 0.71 -11.25 16 25 H -0.24 -11.69 6.74 99.48 0.67 -11.02 16 26 C -0.11 -1.68 9.70 22.27 0.22 -1.46 16 27 C -0.11 -1.22 9.32 22.27 0.21 -1.02 16 28 H 0.07 0.16 8.14 -2.39 -0.02 0.14 16 29 H 0.08 -0.19 7.45 -2.39 -0.02 -0.21 16 30 H 0.05 0.17 8.13 -2.38 -0.02 0.15 16 31 H 0.35 0.96 7.80 -89.69 -0.70 0.26 16 32 H 0.11 -0.70 7.44 -2.39 -0.02 -0.72 16 33 H 0.14 -0.63 8.06 -2.39 -0.02 -0.65 16 34 H 0.15 0.63 8.04 -2.91 -0.02 0.61 16 35 H 0.13 1.59 8.06 -2.91 -0.02 1.57 16 36 H 0.07 1.58 8.09 -2.39 -0.02 1.56 16 37 H 0.07 1.54 8.08 -2.39 -0.02 1.52 16 38 H 0.41 7.58 8.46 -92.70 -0.78 6.80 16 39 H 0.11 3.89 8.14 -2.39 -0.02 3.87 16 40 H 0.11 3.88 8.14 -2.40 -0.02 3.86 16 41 H 0.28 15.54 8.31 -92.71 -0.77 14.77 16 42 H 0.12 1.80 8.06 -2.91 -0.02 1.78 16 43 H 0.13 1.16 7.25 -2.91 -0.02 1.14 16 Total: -1.00 -81.17 387.69 1.66 -79.51 By element: Atomic # 1 Polarization: 6.40 SS G_CDS: -0.47 Total: 5.93 kcal Atomic # 6 Polarization: -15.95 SS G_CDS: 6.11 Total: -9.84 kcal Atomic # 7 Polarization: -83.60 SS G_CDS: -4.78 Total: -88.39 kcal Atomic # 8 Polarization: -24.10 SS G_CDS: -0.05 Total: -24.15 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 1.90 Total: 46.86 kcal Atomic # 16 Polarization: -8.88 SS G_CDS: -1.05 Total: -9.92 kcal Total: -81.17 1.66 -79.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733681079.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.463 kcal (2) G-P(sol) polarization free energy of solvation -81.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds