Wall clock time and date at job start Tue Mar 31 2020 18:33:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.47549 * 2 1 4 4 C 1.52999 * 109.47018 * 239.99834 * 2 1 3 5 5 C 1.52994 * 109.47476 * 175.00371 * 4 2 1 6 6 C 1.52999 * 109.47476 * 179.97438 * 5 4 2 7 7 N 1.46505 * 109.47049 * 179.97438 * 6 5 4 8 8 C 1.36940 * 119.99533 * 180.02562 * 7 6 5 9 9 H 1.07994 * 120.00552 * 359.97438 * 8 7 6 10 10 C 1.38816 * 119.99491 * 180.02562 * 8 7 6 11 11 N 1.31619 * 120.00032 * 359.97438 * 10 8 7 12 12 Si 1.86801 * 119.99698 * 179.97438 * 10 8 7 13 13 H 1.48499 * 109.47042 * 0.02562 * 12 10 8 14 14 H 1.48502 * 109.46820 * 120.00123 * 12 10 8 15 15 H 1.48495 * 109.47254 * 239.99697 * 12 10 8 16 16 N 1.46498 * 109.47054 * 120.00345 * 2 1 3 17 17 C 1.34775 * 119.99922 * 274.99697 * 16 2 1 18 18 O 1.21620 * 119.99994 * 0.02562 * 17 16 2 19 19 C 1.47383 * 120.00078 * 179.97438 * 17 16 2 20 20 N 1.29688 * 121.82878 * 359.97438 * 19 17 16 21 21 S 1.56014 * 111.73895 * 179.44041 * 20 19 17 22 22 C 1.76259 * 97.55936 * 0.56659 * 21 20 19 23 23 C 1.38698 * 134.18153 * 179.36854 * 22 21 20 24 24 C 1.36801 * 119.62703 * 180.02562 * 23 22 21 25 25 C 1.38904 * 120.30731 * 359.97438 * 24 23 22 26 26 C 1.36341 * 121.03551 * 359.97438 * 25 24 23 27 27 C 1.40416 * 119.96049 * 0.30421 * 26 25 24 28 28 H 1.08997 * 109.47124 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47037 * 300.00143 * 1 2 3 30 30 H 1.08997 * 109.46602 * 59.99704 * 1 2 3 31 31 H 1.09003 * 109.47429 * 295.00261 * 4 2 1 32 32 H 1.09005 * 109.47203 * 54.99870 * 4 2 1 33 33 H 1.09008 * 109.47149 * 300.00224 * 5 4 2 34 34 H 1.09002 * 109.47351 * 60.00103 * 5 4 2 35 35 H 1.08991 * 109.47224 * 300.00207 * 6 5 4 36 36 H 1.09001 * 109.46985 * 60.00227 * 6 5 4 37 37 H 0.96994 * 120.00105 * 359.97438 * 7 6 5 38 38 H 0.97005 * 119.99419 * 179.97438 * 11 10 8 39 39 H 0.97003 * 120.00371 * 94.99592 * 16 2 1 40 40 H 1.07994 * 120.18679 * 0.03264 * 23 22 21 41 41 H 1.07995 * 119.84578 * 180.02562 * 24 23 22 42 42 H 1.07994 * 119.48489 * 180.02562 * 25 24 23 43 43 H 1.08002 * 120.01652 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5648 -0.6135 -1.3137 6 6 4.0748 -1.3353 -2.5626 7 7 5.5348 -1.2315 -2.6246 8 6 6.2185 -1.8057 -3.6629 9 1 5.6816 -2.3354 -4.4358 10 6 7.6020 -1.7078 -3.7214 11 7 8.2565 -1.0626 -2.7791 12 14 8.5347 -2.4917 -5.1373 13 1 7.5743 -3.1521 -6.0574 14 1 9.2861 -1.4445 -5.8750 15 1 9.4853 -3.5009 -4.6054 16 7 2.0183 -0.6907 1.1961 17 6 2.1471 -0.0184 2.3571 18 8 1.8575 1.1616 2.4119 19 6 2.6378 -0.7133 3.5606 20 7 2.9553 -1.9706 3.5427 21 16 3.4578 -2.4596 4.9364 22 6 3.2801 -0.9312 5.7963 23 6 3.5088 -0.5247 7.1025 24 6 3.2621 0.7725 7.4600 25 6 2.7857 1.6796 6.5222 26 6 2.5549 1.3016 5.2327 27 6 2.7932 -0.0245 4.8373 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3632 0.5139 -0.8900 31 1 1.7516 -1.7716 -1.2056 32 1 1.6053 -0.2618 -2.1370 33 1 3.8533 0.4368 -1.3574 34 1 3.9994 -1.0730 -0.4260 35 1 3.7864 -2.3854 -2.5185 36 1 3.6402 -0.8761 -3.4505 37 1 6.0171 -0.7554 -1.9306 38 1 9.2233 -0.9946 -2.8199 39 1 2.2490 -1.6319 1.1526 40 1 3.8796 -1.2282 7.8331 41 1 3.4393 1.0929 8.4760 42 1 2.5958 2.7005 6.8188 43 1 2.1848 2.0207 4.5169 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734238255.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:33:10 Heat of formation + Delta-G solvation = 17.289360 kcal Electronic energy + Delta-G solvation = -25010.962484 eV Core-core repulsion = 21375.322822 eV Total energy + Delta-G solvation = -3635.639662 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.86100 -39.41080 -37.26362 -36.67874 -34.83343 -32.59095 -31.44979 -31.26431 -30.75172 -29.38421 -26.41856 -25.58197 -23.51680 -23.14060 -22.61753 -20.97400 -20.71898 -20.52447 -18.99214 -17.80081 -16.99163 -16.79109 -16.17272 -15.71009 -15.55737 -15.10802 -14.66355 -14.52797 -14.45019 -14.25270 -13.88337 -13.70540 -13.45544 -12.98320 -12.75947 -12.56770 -12.47629 -12.20045 -12.10074 -12.05356 -11.52699 -11.29948 -11.15442 -11.00175 -10.85040 -10.78689 -10.44480 -10.37993 -10.14810 -10.05337 -9.95745 -9.66660 -9.41650 -9.17306 -8.84265 -8.20036 -6.88195 -5.73155 -3.01744 0.04083 0.74588 1.00829 1.33822 1.46385 2.90171 2.95972 3.36031 3.45087 3.50198 3.52887 3.99833 4.30893 4.55641 4.58825 4.69799 4.80808 4.90139 5.03577 5.07305 5.13167 5.16392 5.43789 5.54487 5.56371 5.60437 5.62256 5.64206 5.77298 5.80717 5.95057 6.01697 6.07222 6.10459 6.13679 6.22941 6.38326 6.43737 6.44501 6.45345 6.90098 6.93449 7.38226 7.73075 8.01143 8.45862 9.56603 10.16031 10.50360 11.49946 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.012406 B = 0.002521 C = 0.002271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2256.499854 B =11104.063542 C =12324.924115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.140 3.860 3 H 0.092 0.908 4 C -0.123 4.123 5 C -0.127 4.127 6 C 0.153 3.847 7 N -0.735 5.735 8 C -0.238 4.238 9 H 0.070 0.930 10 C -0.017 4.017 11 N -0.934 5.934 12 Si 0.907 3.093 13 H -0.280 1.280 14 H -0.291 1.291 15 H -0.292 1.292 16 N -0.699 5.699 17 C 0.592 3.408 18 O -0.528 6.528 19 C 0.089 3.911 20 N -0.486 5.486 21 S 0.395 5.605 22 C -0.202 4.202 23 C -0.074 4.074 24 C -0.090 4.090 25 C -0.119 4.119 26 C -0.042 4.042 27 C -0.087 4.087 28 H 0.056 0.944 29 H 0.059 0.941 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.081 0.919 33 H 0.062 0.938 34 H 0.061 0.939 35 H 0.017 0.983 36 H 0.018 0.982 37 H 0.383 0.617 38 H 0.254 0.746 39 H 0.409 0.591 40 H 0.134 0.866 41 H 0.135 0.865 42 H 0.134 0.866 43 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.629 1.899 22.659 28.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.036 3.964 3 H 0.111 0.889 4 C -0.161 4.161 5 C -0.165 4.165 6 C 0.026 3.974 7 N -0.379 5.379 8 C -0.369 4.369 9 H 0.088 0.912 10 C -0.212 4.212 11 N -0.583 5.583 12 Si 0.738 3.262 13 H -0.206 1.206 14 H -0.219 1.219 15 H -0.219 1.219 16 N -0.351 5.351 17 C 0.373 3.627 18 O -0.404 6.404 19 C -0.099 4.099 20 N -0.312 5.312 21 S 0.554 5.446 22 C -0.323 4.323 23 C -0.096 4.096 24 C -0.113 4.113 25 C -0.139 4.139 26 C -0.064 4.064 27 C -0.098 4.098 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.100 0.900 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.034 0.966 36 H 0.035 0.965 37 H 0.217 0.783 38 H 0.064 0.936 39 H 0.245 0.755 40 H 0.152 0.848 41 H 0.152 0.848 42 H 0.152 0.848 43 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -16.360 0.413 22.006 27.424 hybrid contribution 0.553 0.945 -0.466 1.190 sum -15.807 1.358 21.540 26.752 Atomic orbital electron populations 1.22176 0.95153 1.02161 1.02548 1.21153 0.93802 0.97881 0.83538 0.88950 1.21856 0.96954 1.00872 0.96437 1.21743 0.93616 1.01476 0.99627 1.20642 0.86183 0.96451 0.94156 1.42396 1.00237 1.66169 1.29076 1.19293 0.89461 1.26930 1.01229 0.91155 1.24762 0.96464 1.01309 0.98693 1.69682 1.07089 1.47087 1.34402 0.86108 0.79893 0.78497 0.81669 1.20563 1.21865 1.21879 1.45963 1.65467 1.14694 1.08951 1.17105 0.77891 0.85880 0.81858 1.90767 1.50567 1.14703 1.84376 1.21897 1.04270 0.88425 0.95323 1.71409 1.17320 1.16773 1.25730 1.81491 1.59083 1.10652 0.93325 1.24319 1.07009 1.01405 0.99586 1.19941 1.00363 0.96721 0.92566 1.21086 0.97370 0.92798 1.00005 1.20936 0.99662 1.00390 0.92923 1.20845 0.95754 0.93301 0.96481 1.19596 1.03555 0.96000 0.90647 0.92446 0.92232 0.91289 0.91326 0.90025 0.91892 0.92070 0.96557 0.96463 0.78347 0.93600 0.75457 0.84788 0.84763 0.84841 0.83439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.64 9.48 37.16 0.35 -1.29 16 2 C 0.14 1.68 2.57 -67.93 -0.17 1.50 16 3 H 0.09 1.24 7.58 -51.93 -0.39 0.85 16 4 C -0.12 -1.52 4.75 -26.73 -0.13 -1.65 16 5 C -0.13 -2.10 5.21 -26.73 -0.14 -2.24 16 6 C 0.15 3.18 6.26 -4.04 -0.03 3.15 16 7 N -0.73 -19.53 5.60 -59.91 -0.34 -19.87 16 8 C -0.24 -6.91 9.99 -15.06 -0.15 -7.06 16 9 H 0.07 1.98 7.83 -52.49 -0.41 1.57 16 10 C -0.02 -0.49 5.50 -17.43 -0.10 -0.59 16 11 N -0.93 -29.15 13.06 55.49 0.72 -28.43 16 12 Si 0.91 22.95 29.55 -169.99 -5.02 17.93 16 13 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 14 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 15 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 16 N -0.70 -8.89 4.52 -54.89 -0.25 -9.13 16 17 C 0.59 8.36 7.77 -12.54 -0.10 8.26 16 18 O -0.53 -8.29 14.68 5.26 0.08 -8.22 16 19 C 0.09 1.19 6.82 -81.99 -0.56 0.63 16 20 N -0.49 -6.18 10.49 28.25 0.30 -5.88 16 21 S 0.39 3.97 23.36 -107.50 -2.51 1.46 16 22 C -0.20 -2.08 6.73 -38.49 -0.26 -2.34 16 23 C -0.07 -0.57 10.03 -39.93 -0.40 -0.97 16 24 C -0.09 -0.61 10.00 -39.86 -0.40 -1.01 16 25 C -0.12 -0.94 9.93 -40.02 -0.40 -1.34 16 26 C -0.04 -0.45 9.57 -39.45 -0.38 -0.82 16 27 C -0.09 -1.06 6.10 -105.09 -0.64 -1.71 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.06 1.10 8.14 -51.92 -0.42 0.67 16 34 H 0.06 1.06 7.75 -51.93 -0.40 0.66 16 35 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.38 10.75 7.67 -40.82 -0.31 10.43 16 38 H 0.25 7.62 8.31 -40.82 -0.34 7.29 16 39 H 0.41 4.98 8.04 -40.82 -0.33 4.65 16 40 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 41 H 0.13 0.51 8.06 -52.49 -0.42 0.08 16 42 H 0.13 0.71 8.06 -52.49 -0.42 0.29 16 43 H 0.15 1.64 6.64 -52.49 -0.35 1.30 16 LS Contribution 376.44 15.07 5.67 5.67 Total: -1.00 -34.20 376.44 -10.82 -45.02 By element: Atomic # 1 Polarization: 14.89 SS G_CDS: -5.98 Total: 8.91 kcal Atomic # 6 Polarization: -3.97 SS G_CDS: -3.49 Total: -7.46 kcal Atomic # 7 Polarization: -63.75 SS G_CDS: 0.44 Total: -63.31 kcal Atomic # 8 Polarization: -8.29 SS G_CDS: 0.08 Total: -8.22 kcal Atomic # 14 Polarization: 22.95 SS G_CDS: -5.02 Total: 17.93 kcal Atomic # 16 Polarization: 3.97 SS G_CDS: -2.51 Total: 1.46 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -34.20 -10.82 -45.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734238255.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.311 kcal (2) G-P(sol) polarization free energy of solvation -34.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.021 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds