Wall clock time and date at job start Tue Mar 31 2020 18:33:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.47549 * 2 1 4 4 C 1.52999 * 109.47018 * 239.99834 * 2 1 3 5 5 C 1.52994 * 109.47476 * 175.00371 * 4 2 1 6 6 C 1.52999 * 109.47476 * 179.97438 * 5 4 2 7 7 N 1.46505 * 109.47049 * 179.97438 * 6 5 4 8 8 C 1.36940 * 119.99533 * 180.02562 * 7 6 5 9 9 H 1.07994 * 120.00552 * 359.97438 * 8 7 6 10 10 C 1.38816 * 119.99491 * 180.02562 * 8 7 6 11 11 N 1.31619 * 120.00032 * 359.97438 * 10 8 7 12 12 Si 1.86801 * 119.99698 * 179.97438 * 10 8 7 13 13 H 1.48499 * 109.47042 * 0.02562 * 12 10 8 14 14 H 1.48502 * 109.46820 * 120.00123 * 12 10 8 15 15 H 1.48495 * 109.47254 * 239.99697 * 12 10 8 16 16 N 1.46498 * 109.47054 * 120.00345 * 2 1 3 17 17 C 1.34775 * 119.99922 * 274.99697 * 16 2 1 18 18 O 1.21620 * 119.99994 * 0.02562 * 17 16 2 19 19 C 1.47383 * 120.00078 * 179.97438 * 17 16 2 20 20 N 1.29688 * 121.82878 * 359.97438 * 19 17 16 21 21 S 1.56014 * 111.73895 * 179.44041 * 20 19 17 22 22 C 1.76259 * 97.55936 * 0.56659 * 21 20 19 23 23 C 1.38698 * 134.18153 * 179.36854 * 22 21 20 24 24 C 1.36801 * 119.62703 * 180.02562 * 23 22 21 25 25 C 1.38904 * 120.30731 * 359.97438 * 24 23 22 26 26 C 1.36341 * 121.03551 * 359.97438 * 25 24 23 27 27 C 1.40416 * 119.96049 * 0.30421 * 26 25 24 28 28 H 1.08997 * 109.47124 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47037 * 300.00143 * 1 2 3 30 30 H 1.08997 * 109.46602 * 59.99704 * 1 2 3 31 31 H 1.09003 * 109.47429 * 295.00261 * 4 2 1 32 32 H 1.09005 * 109.47203 * 54.99870 * 4 2 1 33 33 H 1.09008 * 109.47149 * 300.00224 * 5 4 2 34 34 H 1.09002 * 109.47351 * 60.00103 * 5 4 2 35 35 H 1.08991 * 109.47224 * 300.00207 * 6 5 4 36 36 H 1.09001 * 109.46985 * 60.00227 * 6 5 4 37 37 H 0.96994 * 120.00105 * 359.97438 * 7 6 5 38 38 H 0.97005 * 119.99419 * 179.97438 * 11 10 8 39 39 H 0.97003 * 120.00371 * 94.99592 * 16 2 1 40 40 H 1.07994 * 120.18679 * 0.03264 * 23 22 21 41 41 H 1.07995 * 119.84578 * 180.02562 * 24 23 22 42 42 H 1.07994 * 119.48489 * 180.02562 * 25 24 23 43 43 H 1.08002 * 120.01652 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5648 -0.6135 -1.3137 6 6 4.0748 -1.3353 -2.5626 7 7 5.5348 -1.2315 -2.6246 8 6 6.2185 -1.8057 -3.6629 9 1 5.6816 -2.3354 -4.4358 10 6 7.6020 -1.7078 -3.7214 11 7 8.2565 -1.0626 -2.7791 12 14 8.5347 -2.4917 -5.1373 13 1 7.5743 -3.1521 -6.0574 14 1 9.2861 -1.4445 -5.8750 15 1 9.4853 -3.5009 -4.6054 16 7 2.0183 -0.6907 1.1961 17 6 2.1471 -0.0184 2.3571 18 8 1.8575 1.1616 2.4119 19 6 2.6378 -0.7133 3.5606 20 7 2.9553 -1.9706 3.5427 21 16 3.4578 -2.4596 4.9364 22 6 3.2801 -0.9312 5.7963 23 6 3.5088 -0.5247 7.1025 24 6 3.2621 0.7725 7.4600 25 6 2.7857 1.6796 6.5222 26 6 2.5549 1.3016 5.2327 27 6 2.7932 -0.0245 4.8373 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3632 0.5139 -0.8900 31 1 1.7516 -1.7716 -1.2056 32 1 1.6053 -0.2618 -2.1370 33 1 3.8533 0.4368 -1.3574 34 1 3.9994 -1.0730 -0.4260 35 1 3.7864 -2.3854 -2.5185 36 1 3.6402 -0.8761 -3.4505 37 1 6.0171 -0.7554 -1.9306 38 1 9.2233 -0.9946 -2.8199 39 1 2.2490 -1.6319 1.1526 40 1 3.8796 -1.2282 7.8331 41 1 3.4393 1.0929 8.4760 42 1 2.5958 2.7005 6.8188 43 1 2.1848 2.0207 4.5169 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734238255.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:33:09 Heat of formation + Delta-G solvation = -4.736338 kcal Electronic energy + Delta-G solvation = -25011.917589 eV Core-core repulsion = 21375.322822 eV Total energy + Delta-G solvation = -3636.594768 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.74619 -40.30564 -38.15547 -37.83432 -36.56095 -34.23115 -32.65594 -32.11244 -31.59975 -30.88914 -27.41346 -27.11879 -24.86973 -24.14210 -23.57083 -22.43782 -21.82007 -21.54260 -19.79074 -19.16202 -18.68543 -17.65253 -17.08257 -16.71353 -16.66931 -16.20824 -15.92793 -15.83052 -15.54028 -15.30440 -15.23701 -15.01755 -14.73427 -14.44550 -13.89235 -13.48369 -13.37629 -13.21195 -13.13077 -13.03825 -12.82398 -12.72079 -12.45449 -12.41616 -12.24822 -12.08017 -11.90423 -11.76336 -11.73727 -11.54029 -11.07246 -10.97299 -10.89627 -10.22234 -10.11429 -9.04067 -8.95400 -7.98288 -5.28237 -0.79733 0.03181 0.25118 0.54883 0.61353 1.44823 1.46553 1.56838 1.92915 2.00515 2.53530 2.63984 3.19993 3.35326 3.50183 3.62052 3.85619 3.94096 4.05307 4.06502 4.24384 4.31052 4.35817 4.38930 4.51053 4.54064 4.63526 4.76868 4.79337 4.82225 4.86873 4.94822 4.96466 5.06349 5.14301 5.28214 5.30158 5.34092 5.38614 5.43623 5.47247 5.50944 5.82786 6.24038 6.35185 6.97489 7.29146 8.05640 8.28214 9.25856 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.012406 B = 0.002521 C = 0.002271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2256.499854 B =11104.063542 C =12324.924115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.141 3.859 3 H 0.075 0.925 4 C -0.109 4.109 5 C -0.114 4.114 6 C 0.151 3.849 7 N -0.752 5.752 8 C -0.247 4.247 9 H 0.078 0.922 10 C -0.081 4.081 11 N -0.972 5.972 12 Si 0.978 3.022 13 H -0.264 1.264 14 H -0.292 1.292 15 H -0.292 1.292 16 N -0.696 5.696 17 C 0.586 3.414 18 O -0.554 6.554 19 C 0.065 3.935 20 N -0.510 5.510 21 S 0.429 5.571 22 C -0.214 4.214 23 C -0.074 4.074 24 C -0.080 4.080 25 C -0.111 4.111 26 C -0.069 4.069 27 C -0.115 4.115 28 H 0.068 0.932 29 H 0.046 0.954 30 H 0.086 0.914 31 H 0.084 0.916 32 H 0.099 0.901 33 H 0.050 0.950 34 H 0.048 0.952 35 H 0.023 0.977 36 H 0.024 0.976 37 H 0.371 0.629 38 H 0.251 0.749 39 H 0.412 0.588 40 H 0.166 0.834 41 H 0.175 0.825 42 H 0.161 0.839 43 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.371 1.197 23.794 29.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.038 3.962 3 H 0.093 0.907 4 C -0.148 4.148 5 C -0.152 4.152 6 C 0.025 3.975 7 N -0.394 5.394 8 C -0.378 4.378 9 H 0.096 0.904 10 C -0.272 4.272 11 N -0.623 5.623 12 Si 0.806 3.194 13 H -0.188 1.188 14 H -0.219 1.219 15 H -0.219 1.219 16 N -0.347 5.347 17 C 0.368 3.632 18 O -0.432 6.432 19 C -0.123 4.123 20 N -0.337 5.337 21 S 0.589 5.411 22 C -0.335 4.335 23 C -0.096 4.096 24 C -0.103 4.103 25 C -0.130 4.130 26 C -0.091 4.091 27 C -0.126 4.126 28 H 0.087 0.913 29 H 0.066 0.934 30 H 0.105 0.895 31 H 0.102 0.898 32 H 0.118 0.882 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.041 0.959 36 H 0.042 0.958 37 H 0.202 0.798 38 H 0.060 0.940 39 H 0.248 0.752 40 H 0.184 0.816 41 H 0.192 0.808 42 H 0.178 0.822 43 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -17.154 -0.314 23.122 28.792 hybrid contribution 0.764 1.174 -0.695 1.563 sum -16.390 0.860 22.427 27.791 Atomic orbital electron populations 1.22098 0.93221 1.03010 1.02823 1.21151 0.95207 0.96784 0.83075 0.90727 1.21768 0.93516 1.02146 0.97321 1.21594 0.96584 0.99853 0.97126 1.20848 0.83211 0.97290 0.96191 1.42677 1.02573 1.65890 1.28260 1.19725 0.90063 1.26332 1.01708 0.90400 1.25671 0.97540 1.02460 1.01572 1.69850 1.07057 1.48890 1.36540 0.85005 0.78411 0.77361 0.78577 1.18785 1.21894 1.21889 1.46001 1.65119 1.14737 1.08890 1.17360 0.77623 0.85743 0.82512 1.90734 1.51842 1.15687 1.84915 1.21896 1.05825 0.88875 0.95666 1.71213 1.17837 1.16807 1.27891 1.81165 1.57757 1.10169 0.92009 1.24567 1.07565 1.00915 1.00496 1.20454 0.99338 0.97904 0.91875 1.21577 0.95310 0.91961 1.01439 1.21323 0.97874 1.02009 0.91786 1.20890 0.97721 0.92766 0.97773 1.19777 1.05006 0.97058 0.90713 0.91265 0.93438 0.89516 0.89776 0.88216 0.93166 0.93309 0.95887 0.95754 0.79819 0.93985 0.75184 0.81639 0.80751 0.82176 0.85075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.96 9.48 71.98 0.68 -2.28 16 2 C 0.14 3.39 2.57 44.99 0.12 3.51 16 3 H 0.07 2.08 7.58 -2.39 -0.02 2.06 16 4 C -0.11 -2.58 4.75 30.59 0.15 -2.44 16 5 C -0.11 -3.80 5.21 30.59 0.16 -3.64 16 6 C 0.15 6.20 6.26 86.38 0.54 6.74 16 7 N -0.75 -40.48 5.60 -343.45 -1.92 -42.41 16 8 C -0.25 -14.34 9.99 84.03 0.84 -13.50 16 9 H 0.08 4.31 7.83 -2.91 -0.02 4.29 16 10 C -0.08 -4.80 5.50 84.86 0.47 -4.33 16 11 N -0.97 -61.84 13.06 21.65 0.28 -61.56 16 12 Si 0.98 47.31 29.55 68.60 2.03 49.34 16 13 H -0.26 -11.89 7.11 99.48 0.71 -11.18 16 14 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16 15 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16 16 N -0.70 -18.35 4.52 -445.83 -2.02 -20.37 16 17 C 0.59 17.64 7.77 86.65 0.67 18.31 16 18 O -0.55 -18.67 14.68 -4.09 -0.06 -18.73 16 19 C 0.06 1.82 6.82 43.85 0.30 2.12 16 20 N -0.51 -13.43 10.49 -64.53 -0.68 -14.11 16 21 S 0.43 8.54 23.36 -56.49 -1.32 7.22 16 22 C -0.21 -4.27 6.73 22.97 0.15 -4.12 16 23 C -0.07 -0.95 10.03 22.04 0.22 -0.73 16 24 C -0.08 -0.82 10.00 22.09 0.22 -0.60 16 25 C -0.11 -1.56 9.93 21.99 0.22 -1.34 16 26 C -0.07 -1.52 9.57 22.36 0.21 -1.31 16 27 C -0.12 -2.91 6.10 -20.17 -0.12 -3.03 16 28 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 32 H 0.10 2.05 8.14 -2.38 -0.02 2.03 16 33 H 0.05 1.79 8.14 -2.38 -0.02 1.77 16 34 H 0.05 1.74 7.75 -2.39 -0.02 1.72 16 35 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.37 21.44 7.67 -92.71 -0.71 20.73 16 38 H 0.25 15.37 8.31 -92.70 -0.77 14.60 16 39 H 0.41 10.32 8.04 -92.71 -0.75 9.58 16 40 H 0.17 1.02 8.06 -2.91 -0.02 1.00 16 41 H 0.18 0.42 8.06 -2.91 -0.02 0.39 16 42 H 0.16 1.30 8.06 -2.91 -0.02 1.28 16 43 H 0.13 3.21 6.64 -2.91 -0.02 3.19 16 Total: -1.00 -75.99 376.44 0.73 -75.26 By element: Atomic # 1 Polarization: 32.40 SS G_CDS: -0.41 Total: 31.99 kcal Atomic # 6 Polarization: -11.46 SS G_CDS: 4.83 Total: -6.63 kcal Atomic # 7 Polarization: -134.11 SS G_CDS: -4.34 Total: -138.44 kcal Atomic # 8 Polarization: -18.67 SS G_CDS: -0.06 Total: -18.73 kcal Atomic # 14 Polarization: 47.31 SS G_CDS: 2.03 Total: 49.34 kcal Atomic # 16 Polarization: 8.54 SS G_CDS: -1.32 Total: 7.22 kcal Total: -75.99 0.73 -75.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734238255.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.526 kcal (2) G-P(sol) polarization free energy of solvation -75.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds