Wall clock time and date at job start Tue Mar 31 2020 18:33:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.52997 * 109.46817 * 119.99820 * 2 1 3 5 5 C 1.53004 * 109.47236 * 184.99998 * 4 2 1 6 6 C 1.52997 * 109.47236 * 180.02562 * 5 4 2 7 7 N 1.46502 * 109.47004 * 180.02562 * 6 5 4 8 8 C 1.36938 * 119.99817 * 180.02562 * 7 6 5 9 9 H 1.08000 * 120.00298 * 359.97438 * 8 7 6 10 10 C 1.38817 * 119.99790 * 179.97438 * 8 7 6 11 11 N 1.31620 * 119.99855 * 0.02562 * 10 8 7 12 12 Si 1.86802 * 119.99753 * 179.97438 * 10 8 7 13 13 H 1.48489 * 109.47288 * 0.02562 * 12 10 8 14 14 H 1.48499 * 109.46531 * 120.00656 * 12 10 8 15 15 H 1.48505 * 109.47221 * 240.00330 * 12 10 8 16 16 N 1.46505 * 109.47411 * 239.99921 * 2 1 3 17 17 C 1.34769 * 119.99686 * 84.99974 * 16 2 1 18 18 O 1.21614 * 120.00733 * 0.02562 * 17 16 2 19 19 C 1.47387 * 119.99957 * 180.02562 * 17 16 2 20 20 N 1.29687 * 121.82361 * 0.02562 * 19 17 16 21 21 S 1.56005 * 111.74056 * 179.97438 * 20 19 17 22 22 C 1.76251 * 97.56210 * 0.02562 * 21 20 19 23 23 C 1.38694 * 134.19106 * 180.02562 * 22 21 20 24 24 C 1.36800 * 119.63389 * 179.97438 * 23 22 21 25 25 C 1.38907 * 120.30300 * 0.02765 * 24 23 22 26 26 C 1.36331 * 121.03748 * 359.97283 * 25 24 23 27 27 C 1.40410 * 119.95850 * 359.73233 * 26 25 24 28 28 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 29 29 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 30 30 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47630 * 305.00128 * 4 2 1 32 32 H 1.09004 * 109.47346 * 65.00258 * 4 2 1 33 33 H 1.09001 * 109.46917 * 300.00567 * 5 4 2 34 34 H 1.09004 * 109.46741 * 59.99889 * 5 4 2 35 35 H 1.08993 * 109.47322 * 300.00158 * 6 5 4 36 36 H 1.09004 * 109.46881 * 60.00519 * 6 5 4 37 37 H 0.97000 * 119.99888 * 359.97438 * 7 6 5 38 38 H 0.97002 * 119.99337 * 179.97438 * 11 10 8 39 39 H 0.97000 * 119.99634 * 265.00306 * 16 2 1 40 40 H 1.08006 * 120.18441 * 359.95772 * 23 22 21 41 41 H 1.07997 * 119.85301 * 180.02562 * 24 23 22 42 42 H 1.08011 * 119.48041 * 179.97438 * 25 24 23 43 43 H 1.07997 * 120.01809 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5648 -0.6133 1.3138 6 6 4.0748 -1.3351 2.5627 7 7 5.5348 -1.2312 2.6248 8 6 6.2186 -1.8062 3.6626 9 1 5.6816 -2.3359 4.4355 10 6 7.6020 -1.7082 3.7211 11 7 8.2564 -1.0622 2.7794 12 14 8.5348 -2.4920 5.1371 13 1 7.5745 -3.1535 6.0565 14 1 9.4854 -3.5012 4.6052 15 1 9.2860 -1.4449 5.8750 16 7 2.0184 -0.6906 -1.1962 17 6 2.1472 -0.0183 -2.3570 18 8 1.8584 1.1618 -2.4117 19 6 2.6380 -0.7131 -3.5606 20 7 2.9556 -1.9704 -3.5426 21 16 3.4442 -2.4630 -4.9399 22 6 3.2751 -0.9325 -5.7976 23 6 3.5088 -0.5245 -7.1024 24 6 3.2685 0.7743 -7.4583 25 6 2.7935 1.6818 -6.5200 26 6 2.5569 1.3022 -5.2321 27 6 2.7883 -0.0256 -4.8386 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.6053 -0.2617 2.1370 32 1 1.7516 -1.7715 1.2056 33 1 3.9994 -1.0728 0.4261 34 1 3.8531 0.4370 1.3574 35 1 3.6402 -0.8760 3.4506 36 1 3.7864 -2.3853 2.5186 37 1 6.0171 -0.7557 1.9304 38 1 9.2231 -0.9935 2.8206 39 1 2.2491 -1.6318 -1.1525 40 1 3.8788 -1.2283 -7.8334 41 1 3.4488 1.0957 -8.4734 42 1 2.6087 2.7041 -6.8153 43 1 2.1872 2.0213 -4.5162 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734238256.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:33:14 Heat of formation + Delta-G solvation = 17.298792 kcal Electronic energy + Delta-G solvation = -25010.821327 eV Core-core repulsion = 21375.182075 eV Total energy + Delta-G solvation = -3635.639253 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.86195 -39.41149 -37.26395 -36.67919 -34.83358 -32.59096 -31.45040 -31.26436 -30.75181 -29.38414 -26.41856 -25.58200 -23.51657 -23.14052 -22.61761 -20.97376 -20.71897 -20.52486 -18.99235 -17.80118 -16.99154 -16.79126 -16.17143 -15.71151 -15.55833 -15.10842 -14.66295 -14.52736 -14.44974 -14.25239 -13.88455 -13.70545 -13.45543 -12.98300 -12.75917 -12.56778 -12.47611 -12.20146 -12.10084 -12.05363 -11.52724 -11.29919 -11.15416 -11.00181 -10.85034 -10.78657 -10.44525 -10.37965 -10.14834 -10.05350 -9.95721 -9.66637 -9.41644 -9.17346 -8.84248 -8.20056 -6.88181 -5.73144 -3.01722 0.04108 0.74604 1.00821 1.33915 1.46294 2.90260 2.95877 3.36036 3.45097 3.50212 3.52891 3.99860 4.30874 4.55631 4.58829 4.69803 4.80801 4.90118 5.03560 5.07318 5.13139 5.16426 5.43821 5.54485 5.56347 5.60445 5.62255 5.64164 5.77297 5.80719 5.95064 6.01706 6.07209 6.10472 6.13699 6.22951 6.38333 6.43741 6.44506 6.45329 6.90108 6.93473 7.38260 7.73057 8.01148 8.45882 9.56610 10.16045 10.50370 11.49966 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.012402 B = 0.002520 C = 0.002271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2257.230491 B =11107.331747 C =12324.531664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.140 3.860 3 H 0.092 0.908 4 C -0.123 4.123 5 C -0.127 4.127 6 C 0.153 3.847 7 N -0.735 5.735 8 C -0.238 4.238 9 H 0.070 0.930 10 C -0.017 4.017 11 N -0.934 5.934 12 Si 0.907 3.093 13 H -0.280 1.280 14 H -0.292 1.292 15 H -0.291 1.291 16 N -0.699 5.699 17 C 0.592 3.408 18 O -0.528 6.528 19 C 0.089 3.911 20 N -0.486 5.486 21 S 0.395 5.605 22 C -0.202 4.202 23 C -0.074 4.074 24 C -0.090 4.090 25 C -0.119 4.119 26 C -0.042 4.042 27 C -0.087 4.087 28 H 0.068 0.932 29 H 0.058 0.942 30 H 0.056 0.944 31 H 0.081 0.919 32 H 0.068 0.932 33 H 0.061 0.939 34 H 0.062 0.938 35 H 0.018 0.982 36 H 0.017 0.983 37 H 0.383 0.617 38 H 0.254 0.746 39 H 0.409 0.591 40 H 0.134 0.866 41 H 0.135 0.865 42 H 0.134 0.866 43 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.647 1.896 -22.662 28.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.036 3.964 3 H 0.110 0.890 4 C -0.161 4.161 5 C -0.165 4.165 6 C 0.026 3.974 7 N -0.379 5.379 8 C -0.369 4.369 9 H 0.088 0.912 10 C -0.212 4.212 11 N -0.583 5.583 12 Si 0.738 3.262 13 H -0.206 1.206 14 H -0.219 1.219 15 H -0.219 1.219 16 N -0.351 5.351 17 C 0.373 3.627 18 O -0.404 6.404 19 C -0.099 4.099 20 N -0.312 5.312 21 S 0.555 5.445 22 C -0.323 4.323 23 C -0.096 4.096 24 C -0.113 4.113 25 C -0.139 4.139 26 C -0.064 4.064 27 C -0.098 4.098 28 H 0.087 0.913 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.100 0.900 32 H 0.087 0.913 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.035 0.965 36 H 0.034 0.966 37 H 0.217 0.783 38 H 0.064 0.936 39 H 0.245 0.755 40 H 0.152 0.848 41 H 0.152 0.848 42 H 0.152 0.848 43 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -16.384 0.408 -22.010 27.442 hybrid contribution 0.564 0.947 0.467 1.197 sum -15.820 1.355 -21.543 26.763 Atomic orbital electron populations 1.22176 0.95153 1.02161 1.02548 1.21154 0.93801 0.97883 0.83539 0.88951 1.21857 0.96956 1.00872 0.96435 1.21744 0.93614 1.01477 0.99625 1.20642 0.86185 0.96448 0.94156 1.42396 1.00233 1.66171 1.29078 1.19293 0.89456 1.26909 1.01252 0.91156 1.24763 0.96464 1.01307 0.98694 1.69682 1.07098 1.47051 1.34431 0.86108 0.79893 0.78496 0.81671 1.20563 1.21883 1.21857 1.45961 1.65467 1.14701 1.08944 1.17102 0.77892 0.85879 0.81857 1.90765 1.50603 1.14681 1.84361 1.21898 1.04212 0.88498 0.95306 1.71406 1.17406 1.16753 1.25673 1.81485 1.59599 1.10370 0.93088 1.24318 1.06992 1.01376 0.99640 1.19942 1.00351 0.96703 0.92596 1.21086 0.97384 0.92794 0.99994 1.20938 0.99648 1.00396 0.92929 1.20840 0.95771 0.93268 0.96503 1.19597 1.03548 0.96005 0.90651 0.91282 0.92241 0.92447 0.90023 0.91326 0.92070 0.91892 0.96457 0.96565 0.78348 0.93600 0.75457 0.84788 0.84762 0.84839 0.83439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.64 9.48 37.16 0.35 -1.29 16 2 C 0.14 1.68 2.57 -67.93 -0.17 1.50 16 3 H 0.09 1.24 7.58 -51.93 -0.39 0.85 16 4 C -0.12 -1.52 4.75 -26.73 -0.13 -1.65 16 5 C -0.13 -2.10 5.22 -26.73 -0.14 -2.24 16 6 C 0.15 3.18 6.26 -4.04 -0.03 3.15 16 7 N -0.73 -19.53 5.60 -59.91 -0.34 -19.87 16 8 C -0.24 -6.91 9.99 -15.06 -0.15 -7.06 16 9 H 0.07 1.98 7.83 -52.49 -0.41 1.57 16 10 C -0.02 -0.49 5.50 -17.43 -0.10 -0.59 16 11 N -0.93 -29.15 13.06 55.49 0.72 -28.43 16 12 Si 0.91 22.95 29.55 -169.99 -5.02 17.93 16 13 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 14 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 15 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 16 N -0.70 -8.89 4.52 -54.89 -0.25 -9.13 16 17 C 0.59 8.36 7.77 -12.54 -0.10 8.27 16 18 O -0.53 -8.30 14.67 5.27 0.08 -8.22 16 19 C 0.09 1.19 6.82 -81.98 -0.56 0.63 16 20 N -0.49 -6.18 10.49 28.25 0.30 -5.88 16 21 S 0.39 3.97 23.36 -107.50 -2.51 1.46 16 22 C -0.20 -2.08 6.73 -38.49 -0.26 -2.34 16 23 C -0.07 -0.57 10.03 -39.93 -0.40 -0.97 16 24 C -0.09 -0.61 10.00 -39.85 -0.40 -1.01 16 25 C -0.12 -0.94 9.93 -40.02 -0.40 -1.34 16 26 C -0.04 -0.45 9.57 -39.45 -0.38 -0.82 16 27 C -0.09 -1.06 6.10 -105.09 -0.64 -1.71 16 28 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.06 1.06 7.75 -51.93 -0.40 0.66 16 34 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 35 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.38 10.75 7.67 -40.82 -0.31 10.44 16 38 H 0.25 7.63 8.31 -40.82 -0.34 7.29 16 39 H 0.41 4.98 8.04 -40.82 -0.33 4.65 16 40 H 0.13 0.67 8.06 -52.48 -0.42 0.25 16 41 H 0.13 0.51 8.06 -52.49 -0.42 0.08 16 42 H 0.13 0.71 8.06 -52.48 -0.42 0.29 16 43 H 0.15 1.64 6.64 -52.49 -0.35 1.30 16 LS Contribution 376.44 15.07 5.67 5.67 Total: -1.00 -34.21 376.44 -10.82 -45.03 By element: Atomic # 1 Polarization: 14.89 SS G_CDS: -5.98 Total: 8.91 kcal Atomic # 6 Polarization: -3.97 SS G_CDS: -3.49 Total: -7.46 kcal Atomic # 7 Polarization: -63.75 SS G_CDS: 0.44 Total: -63.32 kcal Atomic # 8 Polarization: -8.30 SS G_CDS: 0.08 Total: -8.22 kcal Atomic # 14 Polarization: 22.95 SS G_CDS: -5.02 Total: 17.93 kcal Atomic # 16 Polarization: 3.97 SS G_CDS: -2.51 Total: 1.46 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -34.21 -10.82 -45.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734238256.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.326 kcal (2) G-P(sol) polarization free energy of solvation -34.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.027 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds