Wall clock time and date at job start Tue Mar 31 2020 18:33:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.52997 * 109.46817 * 119.99820 * 2 1 3 5 5 C 1.53004 * 109.47236 * 184.99998 * 4 2 1 6 6 C 1.52997 * 109.47236 * 180.02562 * 5 4 2 7 7 N 1.46502 * 109.47004 * 180.02562 * 6 5 4 8 8 C 1.36938 * 119.99817 * 180.02562 * 7 6 5 9 9 H 1.08000 * 120.00298 * 359.97438 * 8 7 6 10 10 C 1.38817 * 119.99790 * 179.97438 * 8 7 6 11 11 N 1.31620 * 119.99855 * 0.02562 * 10 8 7 12 12 Si 1.86802 * 119.99753 * 179.97438 * 10 8 7 13 13 H 1.48489 * 109.47288 * 0.02562 * 12 10 8 14 14 H 1.48499 * 109.46531 * 120.00656 * 12 10 8 15 15 H 1.48505 * 109.47221 * 240.00330 * 12 10 8 16 16 N 1.46505 * 109.47411 * 239.99921 * 2 1 3 17 17 C 1.34769 * 119.99686 * 84.99974 * 16 2 1 18 18 O 1.21614 * 120.00733 * 0.02562 * 17 16 2 19 19 C 1.47387 * 119.99957 * 180.02562 * 17 16 2 20 20 N 1.29687 * 121.82361 * 0.02562 * 19 17 16 21 21 S 1.56005 * 111.74056 * 179.97438 * 20 19 17 22 22 C 1.76251 * 97.56210 * 0.02562 * 21 20 19 23 23 C 1.38694 * 134.19106 * 180.02562 * 22 21 20 24 24 C 1.36800 * 119.63389 * 179.97438 * 23 22 21 25 25 C 1.38907 * 120.30300 * 0.02765 * 24 23 22 26 26 C 1.36331 * 121.03748 * 359.97283 * 25 24 23 27 27 C 1.40410 * 119.95850 * 359.73233 * 26 25 24 28 28 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 29 29 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 30 30 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47630 * 305.00128 * 4 2 1 32 32 H 1.09004 * 109.47346 * 65.00258 * 4 2 1 33 33 H 1.09001 * 109.46917 * 300.00567 * 5 4 2 34 34 H 1.09004 * 109.46741 * 59.99889 * 5 4 2 35 35 H 1.08993 * 109.47322 * 300.00158 * 6 5 4 36 36 H 1.09004 * 109.46881 * 60.00519 * 6 5 4 37 37 H 0.97000 * 119.99888 * 359.97438 * 7 6 5 38 38 H 0.97002 * 119.99337 * 179.97438 * 11 10 8 39 39 H 0.97000 * 119.99634 * 265.00306 * 16 2 1 40 40 H 1.08006 * 120.18441 * 359.95772 * 23 22 21 41 41 H 1.07997 * 119.85301 * 180.02562 * 24 23 22 42 42 H 1.08011 * 119.48041 * 179.97438 * 25 24 23 43 43 H 1.07997 * 120.01809 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5648 -0.6133 1.3138 6 6 4.0748 -1.3351 2.5627 7 7 5.5348 -1.2312 2.6248 8 6 6.2186 -1.8062 3.6626 9 1 5.6816 -2.3359 4.4355 10 6 7.6020 -1.7082 3.7211 11 7 8.2564 -1.0622 2.7794 12 14 8.5348 -2.4920 5.1371 13 1 7.5745 -3.1535 6.0565 14 1 9.4854 -3.5012 4.6052 15 1 9.2860 -1.4449 5.8750 16 7 2.0184 -0.6906 -1.1962 17 6 2.1472 -0.0183 -2.3570 18 8 1.8584 1.1618 -2.4117 19 6 2.6380 -0.7131 -3.5606 20 7 2.9556 -1.9704 -3.5426 21 16 3.4442 -2.4630 -4.9399 22 6 3.2751 -0.9325 -5.7976 23 6 3.5088 -0.5245 -7.1024 24 6 3.2685 0.7743 -7.4583 25 6 2.7935 1.6818 -6.5200 26 6 2.5569 1.3022 -5.2321 27 6 2.7883 -0.0256 -4.8386 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.6053 -0.2617 2.1370 32 1 1.7516 -1.7715 1.2056 33 1 3.9994 -1.0728 0.4261 34 1 3.8531 0.4370 1.3574 35 1 3.6402 -0.8760 3.4506 36 1 3.7864 -2.3853 2.5186 37 1 6.0171 -0.7557 1.9304 38 1 9.2231 -0.9935 2.8206 39 1 2.2491 -1.6318 -1.1525 40 1 3.8788 -1.2283 -7.8334 41 1 3.4488 1.0957 -8.4734 42 1 2.6087 2.7041 -6.8153 43 1 2.1872 2.0213 -4.5162 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734238256.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:33:13 Heat of formation + Delta-G solvation = -4.733342 kcal Electronic energy + Delta-G solvation = -25011.776712 eV Core-core repulsion = 21375.182075 eV Total energy + Delta-G solvation = -3636.594638 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.74709 -40.30629 -38.15557 -37.83496 -36.56121 -34.23119 -32.65628 -32.11309 -31.59964 -30.88917 -27.41344 -27.11875 -24.86967 -24.14189 -23.57097 -22.43784 -21.82004 -21.54296 -19.79076 -19.16210 -18.68576 -17.65257 -17.08141 -16.71416 -16.67043 -16.20876 -15.92806 -15.83128 -15.53877 -15.30345 -15.23673 -15.01840 -14.73585 -14.44464 -13.89213 -13.48369 -13.37615 -13.21258 -13.13046 -13.03884 -12.82394 -12.72086 -12.45457 -12.41601 -12.24805 -12.08021 -11.90418 -11.76365 -11.73706 -11.54016 -11.07226 -10.97298 -10.89660 -10.22274 -10.11418 -9.04073 -8.95383 -7.98293 -5.28233 -0.79696 0.03184 0.25146 0.54981 0.61284 1.44824 1.46547 1.56840 1.92956 2.00482 2.53527 2.63976 3.20037 3.35321 3.50183 3.62049 3.85616 3.94079 4.05309 4.06518 4.24368 4.31037 4.35817 4.38942 4.51039 4.54075 4.63514 4.76878 4.79355 4.82210 4.86856 4.94787 4.96452 5.06339 5.14300 5.28210 5.30150 5.34077 5.38616 5.43635 5.47223 5.50941 5.82781 6.24041 6.35225 6.97500 7.29133 8.05630 8.28207 9.25861 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.012402 B = 0.002520 C = 0.002271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2257.230491 B =11107.331747 C =12324.531664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.141 3.859 3 H 0.075 0.925 4 C -0.109 4.109 5 C -0.114 4.114 6 C 0.151 3.849 7 N -0.752 5.752 8 C -0.247 4.247 9 H 0.078 0.922 10 C -0.081 4.081 11 N -0.972 5.972 12 Si 0.978 3.022 13 H -0.264 1.264 14 H -0.292 1.292 15 H -0.292 1.292 16 N -0.696 5.696 17 C 0.586 3.414 18 O -0.554 6.554 19 C 0.065 3.935 20 N -0.510 5.510 21 S 0.429 5.571 22 C -0.215 4.215 23 C -0.074 4.074 24 C -0.080 4.080 25 C -0.111 4.111 26 C -0.069 4.069 27 C -0.115 4.115 28 H 0.086 0.914 29 H 0.046 0.954 30 H 0.068 0.932 31 H 0.099 0.901 32 H 0.084 0.916 33 H 0.048 0.952 34 H 0.050 0.950 35 H 0.025 0.975 36 H 0.023 0.977 37 H 0.371 0.629 38 H 0.251 0.749 39 H 0.412 0.588 40 H 0.166 0.834 41 H 0.175 0.825 42 H 0.161 0.839 43 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.387 1.191 -23.796 29.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.038 3.962 3 H 0.093 0.907 4 C -0.147 4.147 5 C -0.152 4.152 6 C 0.025 3.975 7 N -0.394 5.394 8 C -0.378 4.378 9 H 0.096 0.904 10 C -0.272 4.272 11 N -0.623 5.623 12 Si 0.806 3.194 13 H -0.188 1.188 14 H -0.219 1.219 15 H -0.219 1.219 16 N -0.347 5.347 17 C 0.368 3.632 18 O -0.432 6.432 19 C -0.123 4.123 20 N -0.338 5.338 21 S 0.589 5.411 22 C -0.336 4.336 23 C -0.096 4.096 24 C -0.103 4.103 25 C -0.130 4.130 26 C -0.092 4.092 27 C -0.126 4.126 28 H 0.105 0.895 29 H 0.066 0.934 30 H 0.087 0.913 31 H 0.118 0.882 32 H 0.102 0.898 33 H 0.067 0.933 34 H 0.068 0.932 35 H 0.043 0.957 36 H 0.041 0.959 37 H 0.202 0.798 38 H 0.060 0.940 39 H 0.248 0.752 40 H 0.184 0.816 41 H 0.192 0.808 42 H 0.178 0.822 43 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -17.176 -0.321 -23.126 28.808 hybrid contribution 0.774 1.175 0.696 1.570 sum -16.402 0.855 -22.430 27.800 Atomic orbital electron populations 1.22099 0.93220 1.03009 1.02824 1.21151 0.95208 0.96785 0.83076 0.90729 1.21769 0.93515 1.02146 0.97319 1.21595 0.96586 0.99854 0.97123 1.20847 0.83212 0.97286 0.96192 1.42677 1.02568 1.65892 1.28262 1.19726 0.90060 1.26312 1.01730 0.90401 1.25672 0.97540 1.02459 1.01574 1.69850 1.07067 1.48855 1.36569 0.85005 0.78410 0.77359 0.78578 1.18786 1.21897 1.21883 1.46000 1.65118 1.14744 1.08884 1.17358 0.77625 0.85742 0.82511 1.90733 1.51878 1.15666 1.84902 1.21897 1.05772 0.88951 0.95648 1.71209 1.17920 1.16788 1.27845 1.81158 1.58269 1.09882 0.91758 1.24567 1.07547 1.00891 1.00549 1.20454 0.99321 0.97888 0.91909 1.21578 0.95327 0.91963 1.01421 1.21325 0.97855 1.02023 0.91794 1.20886 0.97740 0.92731 0.97794 1.19777 1.04998 0.97061 0.90714 0.89508 0.93445 0.91266 0.88214 0.89775 0.93311 0.93166 0.95746 0.95895 0.79820 0.93984 0.75183 0.81638 0.80751 0.82175 0.85078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.96 9.48 71.98 0.68 -2.28 16 2 C 0.14 3.39 2.57 44.99 0.12 3.51 16 3 H 0.07 2.08 7.58 -2.39 -0.02 2.06 16 4 C -0.11 -2.58 4.75 30.59 0.15 -2.44 16 5 C -0.11 -3.80 5.22 30.59 0.16 -3.64 16 6 C 0.15 6.20 6.26 86.38 0.54 6.74 16 7 N -0.75 -40.49 5.60 -343.45 -1.92 -42.41 16 8 C -0.25 -14.34 9.99 84.03 0.84 -13.50 16 9 H 0.08 4.31 7.83 -2.91 -0.02 4.29 16 10 C -0.08 -4.80 5.50 84.86 0.47 -4.33 16 11 N -0.97 -61.85 13.06 21.65 0.28 -61.57 16 12 Si 0.98 47.31 29.55 68.60 2.03 49.34 16 13 H -0.26 -11.89 7.11 99.48 0.71 -11.18 16 14 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16 15 H -0.29 -14.03 7.11 99.48 0.71 -13.33 16 16 N -0.70 -18.35 4.52 -445.83 -2.02 -20.37 16 17 C 0.59 17.64 7.77 86.65 0.67 18.31 16 18 O -0.55 -18.68 14.67 -4.07 -0.06 -18.74 16 19 C 0.06 1.82 6.82 43.86 0.30 2.12 16 20 N -0.51 -13.43 10.49 -64.55 -0.68 -14.11 16 21 S 0.43 8.54 23.36 -56.49 -1.32 7.22 16 22 C -0.21 -4.27 6.73 22.97 0.15 -4.12 16 23 C -0.07 -0.95 10.03 22.04 0.22 -0.73 16 24 C -0.08 -0.82 10.00 22.09 0.22 -0.60 16 25 C -0.11 -1.56 9.93 21.99 0.22 -1.34 16 26 C -0.07 -1.52 9.57 22.35 0.21 -1.31 16 27 C -0.12 -2.91 6.10 -20.17 -0.12 -3.03 16 28 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 29 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 32 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.05 1.74 7.75 -2.39 -0.02 1.72 16 34 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 35 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.02 0.93 8.14 -2.38 -0.02 0.91 16 37 H 0.37 21.44 7.67 -92.71 -0.71 20.73 16 38 H 0.25 15.37 8.31 -92.71 -0.77 14.60 16 39 H 0.41 10.32 8.04 -92.71 -0.75 9.58 16 40 H 0.17 1.02 8.06 -2.91 -0.02 1.00 16 41 H 0.18 0.42 8.06 -2.91 -0.02 0.39 16 42 H 0.16 1.30 8.06 -2.90 -0.02 1.28 16 43 H 0.13 3.21 6.64 -2.91 -0.02 3.19 16 Total: -1.00 -76.01 376.44 0.73 -75.28 By element: Atomic # 1 Polarization: 32.40 SS G_CDS: -0.41 Total: 31.99 kcal Atomic # 6 Polarization: -11.46 SS G_CDS: 4.83 Total: -6.63 kcal Atomic # 7 Polarization: -134.12 SS G_CDS: -4.34 Total: -138.46 kcal Atomic # 8 Polarization: -18.68 SS G_CDS: -0.06 Total: -18.74 kcal Atomic # 14 Polarization: 47.31 SS G_CDS: 2.03 Total: 49.34 kcal Atomic # 16 Polarization: 8.54 SS G_CDS: -1.32 Total: 7.22 kcal Total: -76.01 0.73 -75.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734238256.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.546 kcal (2) G-P(sol) polarization free energy of solvation -76.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds