Wall clock time and date at job start Tue Mar 31 2020 18:56:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46497 * 109.47335 * 2 1 4 4 C 1.36934 * 119.99994 * 275.31032 * 3 2 1 5 5 H 1.07998 * 120.00213 * 37.57744 * 4 3 2 6 6 C 1.38819 * 120.00098 * 217.57684 * 4 3 2 7 7 N 1.31621 * 119.99566 * 21.42712 * 6 4 3 8 8 Si 1.86803 * 120.00191 * 201.42124 * 6 4 3 9 9 H 1.48498 * 109.46608 * 60.00285 * 8 6 4 10 10 H 1.48501 * 109.47012 * 179.97438 * 8 6 4 11 11 H 1.48496 * 109.47096 * 300.00312 * 8 6 4 12 12 C 1.46506 * 120.00104 * 95.30870 * 3 2 1 13 13 C 1.52999 * 109.46969 * 269.99927 * 12 3 2 14 14 C 1.52998 * 109.46945 * 179.97438 * 13 12 3 15 15 N 1.46503 * 109.47324 * 180.02562 * 14 13 12 16 16 C 1.34768 * 120.00250 * 180.02562 * 15 14 13 17 17 O 1.21555 * 120.00251 * 359.97438 * 16 15 14 18 18 C 1.47877 * 120.00175 * 180.02562 * 16 15 14 19 19 N 1.32462 * 119.74984 * 0.02562 * 18 16 15 20 20 C 1.31756 * 121.98154 * 180.02562 * 19 18 16 21 21 C 1.37681 * 121.49469 * 0.02562 * 20 19 18 22 22 C 1.41105 * 119.39000 * 359.97321 * 21 20 19 23 23 C 1.44986 * 130.46949 * 180.02562 * 22 21 20 24 24 C 1.32001 * 114.84378 * 180.02562 * 23 22 21 25 25 S 1.75346 * 111.46258 * 0.02562 * 24 23 22 26 26 C 1.40261 * 117.63213 * 0.02586 * 22 21 20 27 27 H 1.08991 * 109.47181 * 180.02562 * 1 2 3 28 28 H 1.09008 * 109.47020 * 300.00418 * 1 2 3 29 29 H 1.09007 * 109.46902 * 59.99738 * 1 2 3 30 30 H 1.08998 * 109.47318 * 240.00013 * 2 1 3 31 31 H 1.09000 * 109.47067 * 119.99894 * 2 1 3 32 32 H 0.97004 * 119.99456 * 180.02562 * 7 6 4 33 33 H 1.08995 * 109.47273 * 149.99970 * 12 3 2 34 34 H 1.09002 * 109.47022 * 29.99937 * 12 3 2 35 35 H 1.09002 * 109.46805 * 60.00158 * 13 12 3 36 36 H 1.08993 * 109.47266 * 300.00173 * 13 12 3 37 37 H 1.08995 * 109.47237 * 60.00080 * 14 13 12 38 38 H 1.09002 * 109.47083 * 300.00032 * 14 13 12 39 39 H 0.97002 * 119.99744 * 359.97438 * 15 14 13 40 40 H 1.08007 * 119.25659 * 179.97438 * 20 19 18 41 41 H 1.08009 * 120.30458 * 179.97438 * 21 20 19 42 42 H 1.08000 * 122.57780 * 359.73115 * 23 22 21 43 43 H 1.08005 * 124.26941 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1432 2.0633 -1.1808 5 1 1.4106 1.9278 -1.9627 6 6 3.2113 2.9289 -1.3728 7 7 4.3027 2.7979 -0.6490 8 14 3.0996 4.2794 -2.6586 9 1 1.9630 5.1785 -2.3345 10 1 4.3620 5.0613 -2.6661 11 1 2.8846 3.6724 -3.9967 12 6 2.3733 2.0327 1.2633 13 6 1.1426 2.7383 1.8365 14 6 1.5131 3.4181 3.1561 15 7 0.3346 4.0933 3.7054 16 6 0.4244 4.7642 4.8708 17 8 1.4830 4.8088 5.4665 18 6 -0.7653 5.4452 5.4254 19 7 -1.9169 5.3922 4.7729 20 6 -3.0037 5.9831 5.2264 21 6 -2.9983 6.6902 6.4077 22 6 -1.8035 6.7856 7.1523 23 6 -1.5279 7.4570 8.4074 24 6 -0.2833 7.3475 8.8334 25 16 0.6923 6.3995 7.7270 26 6 -0.6654 6.1450 6.6408 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 5.0490 3.4031 -0.7830 33 1 3.1617 2.7640 1.0860 34 1 2.7255 1.2833 1.9722 35 1 0.3542 2.0069 2.0138 36 1 0.7904 3.4876 1.1277 37 1 2.3017 4.1494 2.9793 38 1 1.8651 2.6685 3.8648 39 1 -0.5101 4.0581 3.2298 40 1 -3.9194 5.9119 4.6581 41 1 -3.9004 7.1675 6.7613 42 1 -2.2817 8.0085 8.9497 43 1 0.0875 7.7871 9.7475 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752189230.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:56:03 Heat of formation + Delta-G solvation = 36.679740 kcal Electronic energy + Delta-G solvation = -25215.367413 eV Core-core repulsion = 21580.568582 eV Total energy + Delta-G solvation = -3634.798832 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.85097 -39.11948 -36.42914 -36.32890 -34.80386 -32.12283 -31.82619 -30.95318 -30.63098 -28.50782 -25.87989 -24.63823 -24.45937 -23.32532 -21.74093 -21.00964 -20.53640 -19.96477 -18.52091 -17.47575 -16.91934 -16.63676 -15.66981 -15.54838 -15.25243 -15.04935 -14.96441 -14.52144 -14.44440 -13.98653 -13.88951 -13.43288 -13.27740 -12.97598 -12.57856 -12.43761 -12.33512 -12.18149 -11.57288 -11.41092 -11.16209 -11.08770 -10.99526 -10.70944 -10.55600 -10.45206 -10.29633 -10.15761 -10.03292 -9.83580 -9.61678 -9.50201 -9.48070 -8.87593 -8.43815 -8.09205 -6.53305 -5.75608 -3.34645 0.06706 0.47615 1.19357 1.74899 1.79404 2.70923 3.12332 3.38641 3.45028 3.46712 3.57757 3.96298 4.09220 4.36515 4.49926 4.53557 4.82686 5.01064 5.07379 5.13574 5.28417 5.39315 5.43115 5.64795 5.68488 5.83950 5.86989 6.01788 6.10725 6.11892 6.30243 6.38761 6.46040 6.48882 6.61801 6.77513 6.79715 6.94761 7.13349 7.21414 7.33684 7.68372 7.71112 7.85256 8.21337 8.55647 9.22898 9.85285 10.44259 11.23897 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.015976 B = 0.002506 C = 0.002438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1752.258935 B =11169.243916 C =11482.984494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.140 3.860 3 N -0.584 5.584 4 C -0.260 4.260 5 H 0.058 0.942 6 C 0.013 3.987 7 N -0.887 5.887 8 Si 0.895 3.105 9 H -0.283 1.283 10 H -0.290 1.290 11 H -0.281 1.281 12 C 0.152 3.848 13 C -0.147 4.147 14 C 0.118 3.882 15 N -0.697 5.697 16 C 0.559 3.441 17 O -0.529 6.529 18 C 0.136 3.864 19 N -0.442 5.442 20 C 0.082 3.918 21 C -0.111 4.111 22 C -0.046 4.046 23 C -0.132 4.132 24 C -0.203 4.203 25 S 0.196 5.804 26 C -0.166 4.166 27 H 0.034 0.966 28 H 0.043 0.957 29 H 0.048 0.952 30 H 0.043 0.957 31 H 0.033 0.967 32 H 0.255 0.745 33 H 0.095 0.905 34 H 0.025 0.975 35 H 0.052 0.948 36 H 0.066 0.934 37 H 0.071 0.929 38 H 0.066 0.934 39 H 0.410 0.590 40 H 0.168 0.832 41 H 0.144 0.856 42 H 0.148 0.852 43 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.441 8.463 18.860 25.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.014 3.986 3 N -0.305 5.305 4 C -0.390 4.390 5 H 0.076 0.924 6 C -0.188 4.188 7 N -0.529 5.529 8 Si 0.725 3.275 9 H -0.209 1.209 10 H -0.216 1.216 11 H -0.207 1.207 12 C 0.024 3.976 13 C -0.187 4.187 14 C -0.005 4.005 15 N -0.347 5.347 16 C 0.343 3.657 17 O -0.406 6.406 18 C -0.014 4.014 19 N -0.155 5.155 20 C -0.072 4.072 21 C -0.132 4.132 22 C -0.062 4.062 23 C -0.163 4.163 24 C -0.338 4.338 25 S 0.461 5.539 26 C -0.286 4.286 27 H 0.053 0.947 28 H 0.062 0.938 29 H 0.067 0.933 30 H 0.061 0.939 31 H 0.052 0.948 32 H 0.065 0.935 33 H 0.113 0.887 34 H 0.044 0.956 35 H 0.071 0.929 36 H 0.084 0.916 37 H 0.089 0.911 38 H 0.084 0.916 39 H 0.246 0.754 40 H 0.185 0.815 41 H 0.162 0.838 42 H 0.166 0.834 43 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -11.989 7.658 18.489 23.328 hybrid contribution -2.149 1.763 -0.058 2.780 sum -14.137 9.420 18.431 25.066 Atomic orbital electron populations 1.22374 1.00166 0.98872 1.01161 1.20844 0.91671 0.87381 0.98698 1.43735 1.76051 1.08191 1.02485 1.18935 1.04617 1.21285 0.94159 0.92391 1.25185 0.94213 1.01284 0.98073 1.69993 1.03168 1.37295 1.42406 0.86493 0.76927 0.82431 0.81668 1.20912 1.21611 1.20743 1.20793 0.94383 0.96638 0.85763 1.22552 1.02449 0.99978 0.93764 1.21602 0.86784 0.96235 0.95857 1.46014 1.15291 1.51430 1.22007 1.17777 0.86544 0.79494 0.81921 1.90779 1.28354 1.61543 1.59957 1.20725 0.93168 0.96908 0.90589 1.67602 0.98350 1.17576 1.31947 1.22517 0.96478 0.94206 0.94040 1.22123 0.97174 0.98859 0.95070 1.19515 0.93283 0.98006 0.95412 1.20767 0.97435 1.02913 0.95139 1.25798 0.98478 1.04462 1.05064 1.85137 1.07654 1.49783 1.11359 1.23695 0.99745 1.04389 1.00749 0.94656 0.93757 0.93262 0.93907 0.94844 0.93472 0.88724 0.95641 0.92922 0.91572 0.91116 0.91602 0.75381 0.81451 0.83787 0.83398 0.81062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.01 10.21 37.16 0.38 -2.63 16 2 C 0.14 2.97 6.44 -4.04 -0.03 2.95 16 3 N -0.58 -14.34 2.43 -173.24 -0.42 -14.76 16 4 C -0.26 -7.03 9.45 -15.06 -0.14 -7.17 16 5 H 0.06 1.57 7.92 -52.49 -0.42 1.16 16 6 C 0.01 0.35 4.95 -17.43 -0.09 0.27 16 7 N -0.89 -25.40 11.47 55.49 0.64 -24.77 16 8 Si 0.90 21.54 29.61 -169.99 -5.03 16.51 16 9 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 10 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 11 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 12 C 0.15 3.45 5.33 -4.04 -0.02 3.43 16 13 C -0.15 -2.78 5.65 -26.73 -0.15 -2.94 16 14 C 0.12 2.05 5.67 -4.04 -0.02 2.02 16 15 N -0.70 -10.97 5.54 -61.24 -0.34 -11.31 16 16 C 0.56 9.15 7.80 -12.32 -0.10 9.05 16 17 O -0.53 -9.77 15.03 5.32 0.08 -9.69 16 18 C 0.14 1.94 6.78 -82.76 -0.56 1.38 16 19 N -0.44 -5.57 9.51 -9.78 -0.09 -5.66 16 20 C 0.08 0.76 11.12 -17.79 -0.20 0.56 16 21 C -0.11 -0.90 10.18 -38.70 -0.39 -1.30 16 22 C -0.05 -0.47 6.10 -105.38 -0.64 -1.11 16 23 C -0.13 -1.06 10.39 -38.83 -0.40 -1.46 16 24 C -0.20 -1.64 11.02 28.82 0.32 -1.32 16 25 S 0.20 2.29 21.43 -107.50 -2.30 -0.01 16 26 C -0.17 -2.15 6.33 -37.93 -0.24 -2.39 16 27 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 28 H 0.04 0.78 6.64 -51.92 -0.34 0.44 16 29 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 30 H 0.04 0.93 8.08 -51.93 -0.42 0.51 16 31 H 0.03 0.66 7.83 -51.93 -0.41 0.26 16 32 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 33 H 0.10 2.46 5.52 -51.93 -0.29 2.18 16 34 H 0.03 0.55 7.86 -51.93 -0.41 0.15 16 35 H 0.05 0.94 6.64 -51.93 -0.34 0.60 16 36 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 37 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 38 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 39 H 0.41 5.89 7.80 -40.82 -0.32 5.57 16 40 H 0.17 0.98 8.06 -52.48 -0.42 0.55 16 41 H 0.14 0.66 8.06 -52.48 -0.42 0.23 16 42 H 0.15 0.74 8.06 -52.49 -0.42 0.32 16 43 H 0.17 0.85 8.06 -52.48 -0.42 0.43 16 LS Contribution 373.31 15.07 5.63 5.63 Total: -1.00 -31.67 373.31 -10.02 -41.69 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: -5.88 Total: 3.03 kcal Atomic # 6 Polarization: 1.63 SS G_CDS: -2.29 Total: -0.66 kcal Atomic # 7 Polarization: -56.28 SS G_CDS: -0.22 Total: -56.50 kcal Atomic # 8 Polarization: -9.77 SS G_CDS: 0.08 Total: -9.69 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.03 Total: 16.51 kcal Atomic # 16 Polarization: 2.29 SS G_CDS: -2.30 Total: -0.01 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -31.67 -10.02 -41.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752189230.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.371 kcal (2) G-P(sol) polarization free energy of solvation -31.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.692 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds