Wall clock time and date at job start Tue Mar 31 2020 18:56:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46497 * 109.47335 * 2 1 4 4 C 1.36934 * 119.99994 * 275.31032 * 3 2 1 5 5 H 1.07998 * 120.00213 * 37.57744 * 4 3 2 6 6 C 1.38819 * 120.00098 * 217.57684 * 4 3 2 7 7 N 1.31621 * 119.99566 * 21.42712 * 6 4 3 8 8 Si 1.86803 * 120.00191 * 201.42124 * 6 4 3 9 9 H 1.48498 * 109.46608 * 60.00285 * 8 6 4 10 10 H 1.48501 * 109.47012 * 179.97438 * 8 6 4 11 11 H 1.48496 * 109.47096 * 300.00312 * 8 6 4 12 12 C 1.46506 * 120.00104 * 95.30870 * 3 2 1 13 13 C 1.52999 * 109.46969 * 269.99927 * 12 3 2 14 14 C 1.52998 * 109.46945 * 179.97438 * 13 12 3 15 15 N 1.46503 * 109.47324 * 180.02562 * 14 13 12 16 16 C 1.34768 * 120.00250 * 180.02562 * 15 14 13 17 17 O 1.21555 * 120.00251 * 359.97438 * 16 15 14 18 18 C 1.47877 * 120.00175 * 180.02562 * 16 15 14 19 19 N 1.32462 * 119.74984 * 0.02562 * 18 16 15 20 20 C 1.31756 * 121.98154 * 180.02562 * 19 18 16 21 21 C 1.37681 * 121.49469 * 0.02562 * 20 19 18 22 22 C 1.41105 * 119.39000 * 359.97321 * 21 20 19 23 23 C 1.44986 * 130.46949 * 180.02562 * 22 21 20 24 24 C 1.32001 * 114.84378 * 180.02562 * 23 22 21 25 25 S 1.75346 * 111.46258 * 0.02562 * 24 23 22 26 26 C 1.40261 * 117.63213 * 0.02586 * 22 21 20 27 27 H 1.08991 * 109.47181 * 180.02562 * 1 2 3 28 28 H 1.09008 * 109.47020 * 300.00418 * 1 2 3 29 29 H 1.09007 * 109.46902 * 59.99738 * 1 2 3 30 30 H 1.08998 * 109.47318 * 240.00013 * 2 1 3 31 31 H 1.09000 * 109.47067 * 119.99894 * 2 1 3 32 32 H 0.97004 * 119.99456 * 180.02562 * 7 6 4 33 33 H 1.08995 * 109.47273 * 149.99970 * 12 3 2 34 34 H 1.09002 * 109.47022 * 29.99937 * 12 3 2 35 35 H 1.09002 * 109.46805 * 60.00158 * 13 12 3 36 36 H 1.08993 * 109.47266 * 300.00173 * 13 12 3 37 37 H 1.08995 * 109.47237 * 60.00080 * 14 13 12 38 38 H 1.09002 * 109.47083 * 300.00032 * 14 13 12 39 39 H 0.97002 * 119.99744 * 359.97438 * 15 14 13 40 40 H 1.08007 * 119.25659 * 179.97438 * 20 19 18 41 41 H 1.08009 * 120.30458 * 179.97438 * 21 20 19 42 42 H 1.08000 * 122.57780 * 359.73115 * 23 22 21 43 43 H 1.08005 * 124.26941 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1432 2.0633 -1.1808 5 1 1.4106 1.9278 -1.9627 6 6 3.2113 2.9289 -1.3728 7 7 4.3027 2.7979 -0.6490 8 14 3.0996 4.2794 -2.6586 9 1 1.9630 5.1785 -2.3345 10 1 4.3620 5.0613 -2.6661 11 1 2.8846 3.6724 -3.9967 12 6 2.3733 2.0327 1.2633 13 6 1.1426 2.7383 1.8365 14 6 1.5131 3.4181 3.1561 15 7 0.3346 4.0933 3.7054 16 6 0.4244 4.7642 4.8708 17 8 1.4830 4.8088 5.4665 18 6 -0.7653 5.4452 5.4254 19 7 -1.9169 5.3922 4.7729 20 6 -3.0037 5.9831 5.2264 21 6 -2.9983 6.6902 6.4077 22 6 -1.8035 6.7856 7.1523 23 6 -1.5279 7.4570 8.4074 24 6 -0.2833 7.3475 8.8334 25 16 0.6923 6.3995 7.7270 26 6 -0.6654 6.1450 6.6408 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 5.0490 3.4031 -0.7830 33 1 3.1617 2.7640 1.0860 34 1 2.7255 1.2833 1.9722 35 1 0.3542 2.0069 2.0138 36 1 0.7904 3.4876 1.1277 37 1 2.3017 4.1494 2.9793 38 1 1.8651 2.6685 3.8648 39 1 -0.5101 4.0581 3.2298 40 1 -3.9194 5.9119 4.6581 41 1 -3.9004 7.1675 6.7613 42 1 -2.2817 8.0085 8.9497 43 1 0.0875 7.7871 9.7475 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752189230.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:56:02 Heat of formation + Delta-G solvation = 17.176768 kcal Electronic energy + Delta-G solvation = -25216.213126 eV Core-core repulsion = 21580.568582 eV Total energy + Delta-G solvation = -3635.644544 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.75738 -40.26684 -38.19692 -37.06364 -36.27206 -33.81653 -33.19390 -32.23675 -31.38969 -30.22715 -27.42105 -25.95900 -25.37222 -24.74860 -22.66970 -22.47926 -22.03122 -21.35467 -19.42051 -18.63719 -18.44472 -17.69082 -17.10925 -16.79805 -16.69380 -16.12705 -15.97406 -15.77152 -15.52923 -15.37101 -15.08416 -14.82295 -14.72537 -14.23965 -14.05927 -13.62671 -13.27173 -13.21452 -13.16911 -12.91795 -12.75512 -12.74448 -12.56018 -12.38142 -12.17587 -11.98314 -11.89306 -11.47399 -11.27454 -11.23751 -10.95683 -10.83858 -10.48572 -10.23898 -10.21080 -8.92170 -8.54357 -7.80601 -5.44536 -0.72951 -0.32193 0.39580 1.03745 1.08581 1.45305 1.48559 1.54493 1.70118 1.95306 2.51221 2.68150 3.03195 3.24926 3.45134 3.59848 3.66205 3.72092 4.12685 4.14527 4.25376 4.34309 4.42885 4.44585 4.52918 4.55464 4.72235 4.75809 4.79382 4.88919 4.96291 5.01537 5.03084 5.15545 5.23726 5.31077 5.33855 5.44113 5.45157 5.60852 5.69966 5.83802 6.29125 6.48711 6.66550 6.99396 7.19343 7.89142 8.41838 9.14181 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.015976 B = 0.002506 C = 0.002438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1752.258935 B =11169.243916 C =11482.984494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.134 3.866 3 N -0.602 5.602 4 C -0.264 4.264 5 H 0.055 0.945 6 C -0.036 4.036 7 N -0.917 5.917 8 Si 0.954 3.046 9 H -0.279 1.279 10 H -0.294 1.294 11 H -0.274 1.274 12 C 0.152 3.848 13 C -0.123 4.123 14 C 0.132 3.868 15 N -0.694 5.694 16 C 0.555 3.445 17 O -0.560 6.560 18 C 0.101 3.899 19 N -0.457 5.457 20 C 0.074 3.926 21 C -0.085 4.085 22 C -0.058 4.058 23 C -0.124 4.124 24 C -0.189 4.189 25 S 0.122 5.878 26 C -0.183 4.183 27 H 0.065 0.935 28 H 0.049 0.951 29 H 0.036 0.964 30 H 0.030 0.970 31 H 0.045 0.955 32 H 0.251 0.749 33 H 0.061 0.939 34 H 0.030 0.970 35 H 0.069 0.931 36 H 0.050 0.950 37 H 0.050 0.950 38 H 0.067 0.933 39 H 0.417 0.583 40 H 0.205 0.795 41 H 0.192 0.808 42 H 0.190 0.810 43 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.247 9.696 20.260 28.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.009 3.991 3 N -0.323 5.323 4 C -0.395 4.395 5 H 0.073 0.927 6 C -0.233 4.233 7 N -0.561 5.561 8 Si 0.782 3.218 9 H -0.206 1.206 10 H -0.221 1.221 11 H -0.199 1.199 12 C 0.025 3.975 13 C -0.163 4.163 14 C 0.008 3.992 15 N -0.344 5.344 16 C 0.340 3.660 17 O -0.439 6.439 18 C -0.047 4.047 19 N -0.170 5.170 20 C -0.082 4.082 21 C -0.106 4.106 22 C -0.074 4.074 23 C -0.153 4.153 24 C -0.324 4.324 25 S 0.386 5.614 26 C -0.302 4.302 27 H 0.084 0.916 28 H 0.068 0.932 29 H 0.055 0.945 30 H 0.049 0.951 31 H 0.063 0.937 32 H 0.060 0.940 33 H 0.079 0.921 34 H 0.048 0.952 35 H 0.087 0.913 36 H 0.069 0.931 37 H 0.068 0.932 38 H 0.085 0.915 39 H 0.255 0.745 40 H 0.222 0.778 41 H 0.209 0.791 42 H 0.207 0.793 43 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -15.829 8.877 19.893 26.927 hybrid contribution -1.103 1.374 -0.418 1.811 sum -16.931 10.251 19.475 27.767 Atomic orbital electron populations 1.22178 0.97342 1.00787 1.00788 1.20997 0.93778 0.85654 0.98676 1.43982 1.76458 1.09599 1.02255 1.19143 1.04099 1.21395 0.94847 0.92736 1.25852 0.94012 1.03291 1.00179 1.70125 1.03745 1.38063 1.44198 0.85564 0.76525 0.79914 0.79817 1.20553 1.22069 1.19927 1.20683 0.95051 0.96141 0.85603 1.22181 1.00881 0.99503 0.93716 1.21272 0.87023 0.95715 0.95196 1.45843 1.14878 1.51523 1.22195 1.18228 0.87241 0.79034 0.81480 1.90751 1.29854 1.62588 1.60740 1.20298 0.93044 0.99356 0.92051 1.67539 0.98684 1.18322 1.32414 1.23246 0.96504 0.93523 0.94920 1.22679 0.97822 0.96530 0.93540 1.20060 0.93122 0.97760 0.96447 1.21173 0.98074 1.02006 0.94048 1.26034 0.97749 1.03538 1.05074 1.85316 1.10135 1.52229 1.13729 1.23847 1.00792 1.05019 1.00583 0.91575 0.93203 0.94473 0.95149 0.93672 0.93999 0.92113 0.95187 0.91258 0.93120 0.93153 0.91476 0.74542 0.77819 0.79050 0.79280 0.77858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.22 10.21 71.98 0.73 -4.48 16 2 C 0.13 5.61 6.44 86.38 0.56 6.17 16 3 N -0.60 -29.86 2.43 -702.00 -1.71 -31.57 16 4 C -0.26 -14.47 9.45 84.04 0.79 -13.68 16 5 H 0.06 2.98 7.92 -2.91 -0.02 2.95 16 6 C -0.04 -2.01 4.95 84.86 0.42 -1.59 16 7 N -0.92 -54.29 11.47 21.65 0.25 -54.04 16 8 Si 0.95 45.07 29.61 68.60 2.03 47.10 16 9 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 10 H -0.29 -14.01 7.11 99.48 0.71 -13.30 16 11 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 12 C 0.15 7.12 5.33 86.38 0.46 7.58 16 13 C -0.12 -4.72 5.65 30.59 0.17 -4.55 16 14 C 0.13 4.76 5.67 86.38 0.49 5.25 16 15 N -0.69 -22.58 5.54 -465.95 -2.58 -25.16 16 16 C 0.55 19.07 7.80 86.80 0.68 19.75 16 17 O -0.56 -22.13 15.03 -3.89 -0.06 -22.19 16 18 C 0.10 2.92 6.78 42.18 0.29 3.20 16 19 N -0.46 -11.02 9.51 -184.87 -1.76 -12.78 16 20 C 0.07 1.12 11.12 84.57 0.94 2.06 16 21 C -0.08 -1.01 10.18 22.84 0.23 -0.78 16 22 C -0.06 -1.02 6.10 -20.35 -0.12 -1.15 16 23 C -0.12 -1.51 10.39 23.09 0.24 -1.27 16 24 C -0.19 -2.63 11.02 66.91 0.74 -1.90 16 25 S 0.12 2.95 21.43 -56.49 -1.21 1.74 16 26 C -0.18 -4.71 6.33 23.34 0.15 -4.57 16 27 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 28 H 0.05 1.65 6.64 -2.38 -0.02 1.63 16 29 H 0.04 1.35 8.14 -2.38 -0.02 1.33 16 30 H 0.03 1.32 8.08 -2.39 -0.02 1.30 16 31 H 0.04 1.76 7.83 -2.39 -0.02 1.74 16 32 H 0.25 14.45 8.31 -92.71 -0.77 13.68 16 33 H 0.06 3.31 5.52 -2.39 -0.01 3.30 16 34 H 0.03 1.34 7.86 -2.39 -0.02 1.32 16 35 H 0.07 2.43 6.64 -2.39 -0.02 2.42 16 36 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 37 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 38 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 39 H 0.42 12.16 7.80 -92.71 -0.72 11.43 16 40 H 0.21 1.46 8.06 -2.91 -0.02 1.43 16 41 H 0.19 0.45 8.06 -2.91 -0.02 0.43 16 42 H 0.19 0.76 8.06 -2.91 -0.02 0.73 16 43 H 0.20 1.38 8.06 -2.91 -0.02 1.35 16 Total: -1.00 -72.83 373.31 2.04 -70.79 By element: Atomic # 1 Polarization: 15.74 SS G_CDS: 0.31 Total: 16.06 kcal Atomic # 6 Polarization: 3.29 SS G_CDS: 6.77 Total: 10.06 kcal Atomic # 7 Polarization: -117.75 SS G_CDS: -5.80 Total: -123.55 kcal Atomic # 8 Polarization: -22.13 SS G_CDS: -0.06 Total: -22.19 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.10 kcal Atomic # 16 Polarization: 2.95 SS G_CDS: -1.21 Total: 1.74 kcal Total: -72.83 2.04 -70.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752189230.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.964 kcal (2) G-P(sol) polarization free energy of solvation -72.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.788 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds