Wall clock time and date at job start Tue Mar 31 2020 18:47:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.47002 * 2 1 4 4 C 1.52997 * 109.47127 * 240.00426 * 2 1 3 5 5 N 1.46503 * 109.47269 * 184.99793 * 4 2 1 6 6 C 1.34771 * 120.00040 * 179.97438 * 5 4 2 7 7 O 1.21280 * 120.00244 * 359.97438 * 6 5 4 8 8 C 1.50701 * 119.99782 * 180.02562 * 6 5 4 9 9 S 1.81002 * 109.46981 * 179.97438 * 8 6 5 10 10 C 1.76201 * 99.99899 * 179.97438 * 9 8 6 11 11 H 1.08003 * 119.99782 * 359.97438 * 10 9 8 12 12 C 1.38802 * 119.99975 * 180.02562 * 10 9 8 13 13 N 1.31631 * 119.99843 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 119.99878 * 179.97438 * 12 10 9 15 15 H 1.48503 * 109.47111 * 89.99771 * 14 12 10 16 16 H 1.48501 * 109.46959 * 209.99446 * 14 12 10 17 17 H 1.48493 * 109.47056 * 329.99873 * 14 12 10 18 18 N 1.46899 * 109.47163 * 120.00236 * 2 1 3 19 19 C 1.46903 * 110.99807 * 275.00039 * 18 2 1 20 20 C 1.50705 * 109.46848 * 180.02562 * 19 18 2 21 21 C 1.38359 * 119.84310 * 269.72340 * 20 19 18 22 22 C 1.37950 * 120.14680 * 179.76357 * 21 20 19 23 23 C 1.39635 * 119.84601 * 0.54032 * 22 21 20 24 24 C 1.43204 * 120.14940 * 179.70183 * 23 22 21 25 25 N 8.91761 * 108.62486 * 111.91836 * 2 1 3 26 26 C 1.39630 * 119.69885 * 359.71050 * 23 22 21 27 27 C 1.37952 * 119.84434 * 0.02562 * 26 23 22 28 28 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47050 * 299.99734 * 1 2 3 30 30 H 1.09001 * 109.46801 * 59.99846 * 1 2 3 31 31 H 1.09002 * 109.47196 * 304.99671 * 4 2 1 32 32 H 1.09001 * 109.47630 * 64.99767 * 4 2 1 33 33 H 0.97002 * 119.99507 * 359.97438 * 5 4 2 34 34 H 1.09001 * 109.46900 * 299.99312 * 8 6 5 35 35 H 1.08993 * 109.47208 * 59.99748 * 8 6 5 36 36 H 0.97001 * 119.99324 * 179.97438 * 13 12 10 37 37 H 1.00902 * 111.00121 * 38.95441 * 18 2 1 38 38 H 1.09001 * 109.47143 * 300.00154 * 19 18 2 39 39 H 1.08998 * 109.47112 * 60.00049 * 19 18 2 40 40 H 1.08003 * 119.92873 * 0.02562 * 21 20 19 41 41 H 1.08006 * 120.07871 * 180.25368 * 22 21 20 42 42 H 1.07996 * 120.07728 * 179.97438 * 26 23 22 43 43 H 1.08005 * 119.92217 * 179.97438 * 27 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7211 -1.2493 5 7 3.5001 -0.8263 -1.1907 6 6 4.1730 -1.4290 -2.1908 7 8 3.5699 -1.8847 -3.1391 8 6 5.6749 -1.5376 -2.1302 9 16 6.2781 -2.3919 -3.6075 10 6 8.0099 -2.3787 -3.2828 11 1 8.3862 -1.9247 -2.3779 12 6 8.8906 -2.9508 -4.1905 13 7 8.4319 -3.5036 -5.2935 14 14 10.7266 -2.9361 -3.8466 15 1 11.0988 -4.1601 -3.0925 16 1 11.4705 -2.9009 -5.1313 17 1 11.0700 -1.7358 -3.0426 18 7 2.0197 -0.6925 1.1994 19 6 2.0825 0.2226 2.3469 20 6 2.5886 -0.5216 3.5557 21 6 1.6924 -1.1471 4.4042 22 6 2.1491 -1.8341 5.5099 23 6 3.5184 -1.8879 5.7779 24 6 3.9992 -2.5939 6.9273 25 7 4.3781 -3.1545 7.8398 26 6 4.4168 -1.2501 4.9201 27 6 3.9467 -0.5711 3.8150 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.6055 -1.7197 -1.2952 32 1 1.7517 -0.1582 -2.1370 33 1 3.9825 -0.4620 -0.4320 34 1 6.1098 -0.5391 -2.0845 35 1 5.9629 -2.1004 -1.2423 36 1 9.0474 -3.9030 -5.9279 37 1 1.4496 -1.4980 1.4100 38 1 2.7589 1.0462 2.1182 39 1 1.0871 0.6162 2.5525 40 1 0.6332 -1.1008 4.1983 41 1 1.4488 -2.3254 6.1693 42 1 5.4771 -1.2874 5.1218 43 1 4.6404 -0.0770 3.1510 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752863242.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:47:51 Heat of formation + Delta-G solvation = 10.625708 kcal Electronic energy + Delta-G solvation = -24155.375283 eV Core-core repulsion = 20519.446664 eV Total energy + Delta-G solvation = -3635.928619 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 2.71 seconds Orbital eigenvalues (eV) -40.12871 -39.18004 -37.70514 -36.74350 -34.24228 -32.69088 -32.39081 -31.58173 -30.30425 -29.20545 -26.37043 -25.70739 -25.25907 -23.28331 -22.41590 -21.32207 -20.13530 -19.38230 -17.80413 -16.83057 -16.27851 -16.14697 -16.06645 -15.70522 -15.06491 -14.90279 -14.77329 -14.62521 -14.40725 -14.09123 -13.95991 -13.81947 -13.41168 -13.25226 -13.17860 -12.87846 -12.83491 -12.65069 -12.49699 -12.41028 -12.15310 -11.82991 -11.54459 -11.48610 -11.21286 -11.03500 -10.98727 -10.73012 -9.77510 -9.51611 -9.34747 -9.29601 -9.03437 -8.85460 -8.70693 -8.18104 -6.45160 -6.18229 -3.87995 0.26601 0.86107 2.27747 2.48830 3.11530 3.22006 3.24871 3.30777 3.34665 3.37645 3.46225 3.75024 3.89820 4.24163 4.26882 4.29405 4.39697 4.51891 4.69125 4.76673 4.81372 4.90409 5.07017 5.11029 5.16878 5.24613 5.28147 5.30137 5.39728 5.49183 5.62452 5.66500 5.69381 5.72432 5.81840 5.91138 5.97850 6.03887 6.21775 6.30600 6.50565 6.75201 6.94484 7.08469 7.63042 7.90735 8.38793 8.75496 9.27153 10.89198 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.009114 B = 0.002468 C = 0.002000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3071.626845 B =11341.146277 C =13995.458100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.072 3.928 3 H 0.086 0.914 4 C 0.134 3.866 5 N -0.724 5.724 6 C 0.530 3.470 7 O -0.525 6.525 8 C -0.151 4.151 9 S -0.063 6.063 10 C -0.534 4.534 11 H 0.072 0.928 12 C 0.073 3.927 13 N -0.868 5.868 14 Si 0.918 3.082 15 H -0.277 1.277 16 H -0.282 1.282 17 H -0.272 1.272 18 N -0.677 5.677 19 C 0.092 3.908 20 C -0.053 4.053 21 C -0.116 4.116 22 C -0.071 4.071 23 C -0.031 4.031 24 C 0.254 3.746 25 N -0.418 5.418 26 C -0.069 4.069 27 C -0.096 4.096 28 H 0.062 0.938 29 H 0.058 0.942 30 H 0.067 0.933 31 H 0.063 0.937 32 H 0.067 0.933 33 H 0.402 0.598 34 H 0.087 0.913 35 H 0.089 0.911 36 H 0.268 0.732 37 H 0.348 0.652 38 H 0.086 0.914 39 H 0.044 0.956 40 H 0.130 0.870 41 H 0.131 0.869 42 H 0.134 0.866 43 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.440 10.952 20.416 28.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.038 4.038 3 H 0.104 0.896 4 C 0.009 3.991 5 N -0.379 5.379 6 C 0.316 3.684 7 O -0.400 6.400 8 C -0.302 4.302 9 S 0.164 5.836 10 C -0.682 4.682 11 H 0.090 0.910 12 C -0.136 4.136 13 N -0.503 5.503 14 Si 0.744 3.256 15 H -0.203 1.203 16 H -0.208 1.208 17 H -0.197 1.197 18 N -0.309 5.309 19 C -0.036 4.036 20 C -0.054 4.054 21 C -0.134 4.134 22 C -0.091 4.091 23 C -0.034 4.034 24 C -0.062 4.062 25 N -0.093 5.093 26 C -0.089 4.089 27 C -0.114 4.114 28 H 0.081 0.919 29 H 0.077 0.923 30 H 0.087 0.913 31 H 0.082 0.918 32 H 0.086 0.914 33 H 0.237 0.763 34 H 0.105 0.895 35 H 0.107 0.893 36 H 0.078 0.922 37 H 0.167 0.833 38 H 0.105 0.895 39 H 0.062 0.938 40 H 0.148 0.852 41 H 0.149 0.851 42 H 0.152 0.848 43 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -17.160 9.316 19.905 27.883 hybrid contribution 0.992 0.911 1.592 2.086 sum -16.168 10.227 21.497 28.777 Atomic orbital electron populations 1.22421 0.96065 1.02805 1.02714 1.21858 0.93382 0.98415 0.90156 0.89560 1.21224 0.81458 1.00566 0.95882 1.45762 1.06646 1.61395 1.24073 1.20275 0.89437 0.76921 0.81796 1.90692 1.69921 1.46417 1.32975 1.23502 0.93838 1.05426 1.07406 1.85386 1.04483 1.73186 1.20538 1.22871 0.91606 1.44095 1.09629 0.90969 1.24992 0.99534 0.94627 0.94482 1.70024 1.35348 1.35552 1.09422 0.86180 0.82950 0.78601 0.77833 1.20297 1.20804 1.19705 1.60564 1.58104 1.09402 1.02781 1.21012 1.00051 0.94725 0.87835 1.20041 0.93644 0.96494 0.95215 1.20982 0.99946 0.97934 0.94549 1.21130 0.93363 0.97426 0.97199 1.16028 0.93956 1.01431 0.92009 1.25766 0.93761 0.93527 0.93096 1.81275 1.07681 1.09375 1.11011 1.21251 0.99627 0.94803 0.93222 1.21043 0.95147 0.98720 0.96522 0.91871 0.92338 0.91348 0.91825 0.91435 0.76297 0.89452 0.89289 0.92243 0.83336 0.89528 0.93763 0.85203 0.85066 0.84795 0.84459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.87 9.16 37.16 0.34 -0.53 16 2 C 0.07 0.44 2.75 -67.71 -0.19 0.25 16 3 H 0.09 0.49 7.80 -51.93 -0.40 0.09 16 4 C 0.13 1.38 5.37 -4.04 -0.02 1.36 16 5 N -0.72 -9.22 5.39 -60.29 -0.32 -9.54 16 6 C 0.53 9.78 7.85 -10.99 -0.09 9.70 16 7 O -0.52 -11.91 15.86 5.56 0.09 -11.83 16 8 C -0.15 -3.04 6.16 36.01 0.22 -2.82 16 9 S -0.06 -1.70 20.57 -107.50 -2.21 -3.92 16 10 C -0.53 -15.23 9.50 30.94 0.29 -14.93 16 11 H 0.07 1.95 7.80 -52.48 -0.41 1.54 16 12 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 13 N -0.87 -26.27 13.22 55.49 0.73 -25.54 16 14 Si 0.92 21.45 29.55 -169.99 -5.02 16.43 16 15 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 16 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 17 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 18 N -0.68 -3.82 5.68 -107.99 -0.61 -4.43 16 19 C 0.09 0.38 5.60 -4.97 -0.03 0.35 16 20 C -0.05 -0.26 5.40 -104.53 -0.56 -0.82 16 21 C -0.12 -0.50 9.68 -39.64 -0.38 -0.89 16 22 C -0.07 -0.36 9.76 -39.17 -0.38 -0.75 16 23 C -0.03 -0.20 5.73 -106.93 -0.61 -0.82 16 24 C 0.25 2.28 15.33 -22.47 -0.34 1.94 16 25 N -0.42 -4.85 18.54 41.84 0.78 -4.07 16 26 C -0.07 -0.41 9.76 -39.17 -0.38 -0.79 16 27 C -0.10 -0.52 9.68 -39.64 -0.38 -0.91 16 28 H 0.06 0.32 8.13 -51.93 -0.42 -0.11 16 29 H 0.06 0.22 7.45 -51.93 -0.39 -0.16 16 30 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.40 4.19 8.14 -40.82 -0.33 3.86 16 34 H 0.09 1.62 8.14 -51.92 -0.42 1.19 16 35 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 36 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 37 H 0.35 1.93 8.46 -39.29 -0.33 1.60 16 38 H 0.09 0.34 7.99 -51.93 -0.42 -0.07 16 39 H 0.04 0.14 7.37 -51.93 -0.38 -0.24 16 40 H 0.13 0.33 8.06 -52.48 -0.42 -0.10 16 41 H 0.13 0.48 8.06 -52.48 -0.42 0.06 16 42 H 0.13 0.68 8.06 -52.49 -0.42 0.25 16 43 H 0.14 0.63 8.06 -52.48 -0.42 0.20 16 LS Contribution 391.76 15.07 5.90 5.90 Total: -1.00 -36.04 391.76 -9.31 -45.35 By element: Atomic # 1 Polarization: 5.33 SS G_CDS: -6.03 Total: -0.69 kcal Atomic # 6 Polarization: -5.05 SS G_CDS: -2.61 Total: -7.66 kcal Atomic # 7 Polarization: -44.16 SS G_CDS: 0.57 Total: -43.59 kcal Atomic # 8 Polarization: -11.91 SS G_CDS: 0.09 Total: -11.83 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Atomic # 16 Polarization: -1.70 SS G_CDS: -2.21 Total: -3.92 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -36.04 -9.31 -45.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752863242.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.979 kcal (2) G-P(sol) polarization free energy of solvation -36.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.353 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.71 seconds