Wall clock time and date at job start Tue Mar 31 2020 18:47:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.47002 * 2 1 4 4 C 1.52997 * 109.47127 * 240.00426 * 2 1 3 5 5 N 1.46503 * 109.47269 * 184.99793 * 4 2 1 6 6 C 1.34771 * 120.00040 * 179.97438 * 5 4 2 7 7 O 1.21280 * 120.00244 * 359.97438 * 6 5 4 8 8 C 1.50701 * 119.99782 * 180.02562 * 6 5 4 9 9 S 1.81002 * 109.46981 * 179.97438 * 8 6 5 10 10 C 1.76201 * 99.99899 * 179.97438 * 9 8 6 11 11 H 1.08003 * 119.99782 * 359.97438 * 10 9 8 12 12 C 1.38802 * 119.99975 * 180.02562 * 10 9 8 13 13 N 1.31631 * 119.99843 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 119.99878 * 179.97438 * 12 10 9 15 15 H 1.48503 * 109.47111 * 89.99771 * 14 12 10 16 16 H 1.48501 * 109.46959 * 209.99446 * 14 12 10 17 17 H 1.48493 * 109.47056 * 329.99873 * 14 12 10 18 18 N 1.46899 * 109.47163 * 120.00236 * 2 1 3 19 19 C 1.46903 * 110.99807 * 275.00039 * 18 2 1 20 20 C 1.50705 * 109.46848 * 180.02562 * 19 18 2 21 21 C 1.38359 * 119.84310 * 269.72340 * 20 19 18 22 22 C 1.37950 * 120.14680 * 179.76357 * 21 20 19 23 23 C 1.39635 * 119.84601 * 0.54032 * 22 21 20 24 24 C 1.43204 * 120.14940 * 179.70183 * 23 22 21 25 25 N 8.91761 * 108.62486 * 111.91836 * 2 1 3 26 26 C 1.39630 * 119.69885 * 359.71050 * 23 22 21 27 27 C 1.37952 * 119.84434 * 0.02562 * 26 23 22 28 28 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47050 * 299.99734 * 1 2 3 30 30 H 1.09001 * 109.46801 * 59.99846 * 1 2 3 31 31 H 1.09002 * 109.47196 * 304.99671 * 4 2 1 32 32 H 1.09001 * 109.47630 * 64.99767 * 4 2 1 33 33 H 0.97002 * 119.99507 * 359.97438 * 5 4 2 34 34 H 1.09001 * 109.46900 * 299.99312 * 8 6 5 35 35 H 1.08993 * 109.47208 * 59.99748 * 8 6 5 36 36 H 0.97001 * 119.99324 * 179.97438 * 13 12 10 37 37 H 1.00902 * 111.00121 * 38.95441 * 18 2 1 38 38 H 1.09001 * 109.47143 * 300.00154 * 19 18 2 39 39 H 1.08998 * 109.47112 * 60.00049 * 19 18 2 40 40 H 1.08003 * 119.92873 * 0.02562 * 21 20 19 41 41 H 1.08006 * 120.07871 * 180.25368 * 22 21 20 42 42 H 1.07996 * 120.07728 * 179.97438 * 26 23 22 43 43 H 1.08005 * 119.92217 * 179.97438 * 27 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7211 -1.2493 5 7 3.5001 -0.8263 -1.1907 6 6 4.1730 -1.4290 -2.1908 7 8 3.5699 -1.8847 -3.1391 8 6 5.6749 -1.5376 -2.1302 9 16 6.2781 -2.3919 -3.6075 10 6 8.0099 -2.3787 -3.2828 11 1 8.3862 -1.9247 -2.3779 12 6 8.8906 -2.9508 -4.1905 13 7 8.4319 -3.5036 -5.2935 14 14 10.7266 -2.9361 -3.8466 15 1 11.0988 -4.1601 -3.0925 16 1 11.4705 -2.9009 -5.1313 17 1 11.0700 -1.7358 -3.0426 18 7 2.0197 -0.6925 1.1994 19 6 2.0825 0.2226 2.3469 20 6 2.5886 -0.5216 3.5557 21 6 1.6924 -1.1471 4.4042 22 6 2.1491 -1.8341 5.5099 23 6 3.5184 -1.8879 5.7779 24 6 3.9992 -2.5939 6.9273 25 7 4.3781 -3.1545 7.8398 26 6 4.4168 -1.2501 4.9201 27 6 3.9467 -0.5711 3.8150 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.6055 -1.7197 -1.2952 32 1 1.7517 -0.1582 -2.1370 33 1 3.9825 -0.4620 -0.4320 34 1 6.1098 -0.5391 -2.0845 35 1 5.9629 -2.1004 -1.2423 36 1 9.0474 -3.9030 -5.9279 37 1 1.4496 -1.4980 1.4100 38 1 2.7589 1.0462 2.1182 39 1 1.0871 0.6162 2.5525 40 1 0.6332 -1.1008 4.1983 41 1 1.4488 -2.3254 6.1693 42 1 5.4771 -1.2874 5.1218 43 1 4.6404 -0.0770 3.1510 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752863242.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:47:50 Heat of formation + Delta-G solvation = -14.178079 kcal Electronic energy + Delta-G solvation = -24156.450856 eV Core-core repulsion = 20519.446664 eV Total energy + Delta-G solvation = -3637.004192 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.64490 -40.38114 -38.40515 -37.47428 -35.20968 -34.55137 -33.41231 -31.95784 -31.20330 -30.25660 -27.69657 -26.87525 -26.25919 -23.66104 -22.83593 -21.94150 -21.51613 -19.86355 -19.75796 -17.71622 -17.49718 -16.89096 -16.85004 -16.67420 -16.49470 -16.04541 -15.78683 -15.46062 -15.19466 -15.07505 -14.79626 -14.47310 -14.35554 -14.23988 -14.09816 -13.89910 -13.69186 -13.56753 -13.14046 -13.12673 -13.06110 -12.86449 -12.84783 -12.66378 -12.52676 -12.07925 -11.90410 -11.76390 -11.67037 -11.11534 -10.85157 -10.22354 -9.93234 -9.89154 -9.76511 -9.25784 -8.62259 -8.31668 -6.08893 -0.19711 0.48986 1.31355 1.44271 1.50792 1.59006 1.61671 1.74717 1.91554 2.30034 2.45916 2.85735 2.90274 3.02369 3.35472 3.41385 3.90572 3.91444 3.98670 4.03695 4.11160 4.24158 4.37503 4.39693 4.46607 4.48093 4.58512 4.72176 4.75586 4.76266 4.88549 4.95798 5.00263 5.08059 5.15472 5.31059 5.35226 5.41539 5.44959 5.61718 5.66766 5.93573 6.10751 6.23010 6.42099 6.50677 6.71344 7.09745 7.41600 8.77523 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.009114 B = 0.002468 C = 0.002000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3071.626845 B =11341.146277 C =13995.458100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.087 3.913 3 H 0.099 0.901 4 C 0.129 3.871 5 N -0.695 5.695 6 C 0.530 3.470 7 O -0.575 6.575 8 C -0.126 4.126 9 S -0.155 6.155 10 C -0.544 4.544 11 H 0.083 0.917 12 C 0.012 3.988 13 N -0.912 5.912 14 Si 0.998 3.002 15 H -0.269 1.269 16 H -0.279 1.279 17 H -0.257 1.257 18 N -0.687 5.687 19 C 0.096 3.904 20 C -0.050 4.050 21 C -0.112 4.112 22 C -0.070 4.070 23 C -0.050 4.050 24 C 0.277 3.723 25 N -0.474 5.474 26 C -0.075 4.075 27 C -0.104 4.104 28 H 0.059 0.941 29 H 0.077 0.923 30 H 0.065 0.935 31 H 0.050 0.950 32 H 0.060 0.940 33 H 0.418 0.582 34 H 0.108 0.892 35 H 0.106 0.894 36 H 0.270 0.730 37 H 0.349 0.651 38 H 0.093 0.907 39 H 0.062 0.938 40 H 0.154 0.846 41 H 0.144 0.856 42 H 0.137 0.863 43 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.886 12.832 22.015 31.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.023 4.023 3 H 0.117 0.883 4 C 0.005 3.995 5 N -0.348 5.348 6 C 0.315 3.685 7 O -0.454 6.454 8 C -0.278 4.278 9 S 0.072 5.928 10 C -0.692 4.692 11 H 0.101 0.899 12 C -0.193 4.193 13 N -0.549 5.549 14 Si 0.820 3.180 15 H -0.194 1.194 16 H -0.204 1.204 17 H -0.181 1.181 18 N -0.319 5.319 19 C -0.032 4.032 20 C -0.051 4.051 21 C -0.131 4.131 22 C -0.090 4.090 23 C -0.053 4.053 24 C -0.037 4.037 25 N -0.150 5.150 26 C -0.095 4.095 27 C -0.122 4.122 28 H 0.078 0.922 29 H 0.096 0.904 30 H 0.084 0.916 31 H 0.069 0.931 32 H 0.078 0.922 33 H 0.255 0.745 34 H 0.126 0.874 35 H 0.125 0.875 36 H 0.079 0.921 37 H 0.168 0.832 38 H 0.111 0.889 39 H 0.080 0.920 40 H 0.172 0.828 41 H 0.162 0.838 42 H 0.155 0.845 43 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -17.626 11.233 21.568 30.034 hybrid contribution 0.988 0.403 1.124 1.550 sum -16.638 11.636 22.692 30.449 Atomic orbital electron populations 1.22375 0.94705 1.02911 1.03510 1.21675 0.94186 0.98131 0.88327 0.88263 1.21450 0.79380 1.00446 0.98235 1.45527 1.07817 1.58870 1.22611 1.20035 0.88778 0.77303 0.82380 1.90680 1.70476 1.49053 1.35230 1.23344 0.95178 1.05498 1.03759 1.85572 1.05776 1.75218 1.26214 1.23205 0.91719 1.44156 1.10077 0.89923 1.26127 1.05175 0.93902 0.94050 1.70192 1.37332 1.36650 1.10679 0.84963 0.75865 0.79272 0.77937 1.19445 1.20378 1.18072 1.60492 1.58347 1.09886 1.03175 1.21035 1.01197 0.94281 0.86681 1.20209 0.93441 0.96034 0.95448 1.21244 1.01127 0.96947 0.93747 1.21341 0.92798 0.97204 0.97654 1.16157 0.94937 1.02505 0.91738 1.26161 0.92379 0.92385 0.92756 1.81283 1.09414 1.11493 1.12837 1.21355 0.99849 0.94885 0.93426 1.21211 0.95845 0.98769 0.96422 0.92167 0.90444 0.91633 0.93131 0.92210 0.74482 0.87400 0.87549 0.92075 0.83151 0.88893 0.91959 0.82834 0.83817 0.84538 0.83586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.13 9.16 71.98 0.66 -0.48 16 2 C 0.09 0.79 2.75 44.92 0.12 0.91 16 3 H 0.10 0.72 7.80 -2.39 -0.02 0.70 16 4 C 0.13 2.45 5.37 86.38 0.46 2.92 16 5 N -0.70 -16.32 5.39 -463.06 -2.50 -18.81 16 6 C 0.53 19.21 7.85 87.66 0.69 19.90 16 7 O -0.57 -26.59 15.86 -3.03 -0.05 -26.64 16 8 C -0.13 -4.97 6.16 71.24 0.44 -4.53 16 9 S -0.15 -8.63 20.57 -56.49 -1.16 -9.80 16 10 C -0.54 -31.07 9.50 67.95 0.65 -30.42 16 11 H 0.08 4.37 7.80 -2.91 -0.02 4.35 16 12 C 0.01 0.69 5.49 84.86 0.47 1.15 16 13 N -0.91 -56.27 13.22 21.65 0.29 -55.99 16 14 Si 1.00 43.66 29.55 68.60 2.03 45.69 16 15 H -0.27 -11.35 7.11 99.48 0.71 -10.65 16 16 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 17 H -0.26 -10.49 7.11 99.48 0.71 -9.78 16 18 N -0.69 -5.37 5.68 -495.56 -2.81 -8.18 16 19 C 0.10 0.40 5.60 85.56 0.48 0.88 16 20 C -0.05 -0.32 5.40 -19.81 -0.11 -0.43 16 21 C -0.11 -0.61 9.68 22.23 0.22 -0.40 16 22 C -0.07 -0.57 9.76 22.54 0.22 -0.35 16 23 C -0.05 -0.61 5.73 -21.36 -0.12 -0.73 16 24 C 0.28 4.98 15.33 88.33 1.35 6.34 16 25 N -0.47 -11.29 18.54 19.00 0.35 -10.94 16 26 C -0.07 -0.80 9.76 22.54 0.22 -0.58 16 27 C -0.10 -0.89 9.68 22.23 0.22 -0.67 16 28 H 0.06 0.45 8.13 -2.39 -0.02 0.43 16 29 H 0.08 0.26 7.45 -2.39 -0.02 0.24 16 30 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.42 7.38 8.14 -92.71 -0.75 6.62 16 34 H 0.11 3.79 8.14 -2.39 -0.02 3.77 16 35 H 0.11 3.81 8.14 -2.40 -0.02 3.79 16 36 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 37 H 0.35 2.72 8.46 -89.69 -0.76 1.96 16 38 H 0.09 0.33 7.99 -2.39 -0.02 0.31 16 39 H 0.06 0.09 7.37 -2.39 -0.02 0.07 16 40 H 0.15 0.11 8.06 -2.91 -0.02 0.09 16 41 H 0.14 0.76 8.06 -2.91 -0.02 0.74 16 42 H 0.14 1.29 8.06 -2.91 -0.02 1.27 16 43 H 0.15 0.94 8.06 -2.91 -0.02 0.92 16 Total: -1.00 -81.62 391.76 1.64 -79.98 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: -0.47 Total: 11.17 kcal Atomic # 6 Polarization: -12.45 SS G_CDS: 5.96 Total: -6.49 kcal Atomic # 7 Polarization: -89.25 SS G_CDS: -4.67 Total: -93.92 kcal Atomic # 8 Polarization: -26.59 SS G_CDS: -0.05 Total: -26.64 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.69 kcal Atomic # 16 Polarization: -8.63 SS G_CDS: -1.16 Total: -9.80 kcal Total: -81.62 1.64 -79.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752863242.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.807 kcal (2) G-P(sol) polarization free energy of solvation -81.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds