Wall clock time and date at job start Tue Mar 31 2020 18:47:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.46796 * 2 1 4 4 C 1.53002 * 109.47004 * 119.99786 * 2 1 3 5 5 N 1.46502 * 109.46882 * 175.00159 * 4 2 1 6 6 C 1.34781 * 119.99868 * 180.02562 * 5 4 2 7 7 O 1.21280 * 120.00029 * 359.97438 * 6 5 4 8 8 C 1.50703 * 119.99496 * 180.02562 * 6 5 4 9 9 S 1.81001 * 109.46861 * 179.97438 * 8 6 5 10 10 C 1.76196 * 100.00355 * 179.97438 * 9 8 6 11 11 H 1.08003 * 119.99538 * 0.02562 * 10 9 8 12 12 C 1.38796 * 120.00067 * 179.97438 * 10 9 8 13 13 N 1.31636 * 119.99991 * 180.02562 * 12 10 9 14 14 Si 1.86795 * 120.00096 * 0.02562 * 12 10 9 15 15 H 1.48501 * 109.47177 * 89.99780 * 14 12 10 16 16 H 1.48501 * 109.47092 * 209.99584 * 14 12 10 17 17 H 1.48494 * 109.47470 * 329.99741 * 14 12 10 18 18 N 1.46897 * 109.47181 * 240.00258 * 2 1 3 19 19 C 1.46901 * 111.00142 * 84.99770 * 18 2 1 20 20 C 1.50696 * 109.46885 * 179.97438 * 19 18 2 21 21 C 1.38365 * 119.84509 * 90.00234 * 20 19 18 22 22 C 1.37947 * 120.14940 * 179.97438 * 21 20 19 23 23 C 1.39629 * 119.84839 * 359.97438 * 22 21 20 24 24 C 1.43205 * 120.15217 * 180.02562 * 23 22 21 25 25 N 8.91693 * 108.62759 * 248.05882 * 2 1 3 26 26 C 1.39630 * 119.69955 * 0.27680 * 23 22 21 27 27 C 1.37952 * 119.84588 * 359.42138 * 26 23 22 28 28 H 1.09005 * 109.47506 * 299.99590 * 1 2 3 29 29 H 1.08991 * 109.47111 * 60.00202 * 1 2 3 30 30 H 1.08998 * 109.46796 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47262 * 295.00031 * 4 2 1 32 32 H 1.08996 * 109.47137 * 55.00785 * 4 2 1 33 33 H 0.97004 * 119.99979 * 0.02562 * 5 4 2 34 34 H 1.08997 * 109.47157 * 299.99567 * 8 6 5 35 35 H 1.09002 * 109.47402 * 60.00346 * 8 6 5 36 36 H 0.96989 * 120.00064 * 180.02562 * 13 12 10 37 37 H 1.00904 * 110.99744 * 208.95649 * 18 2 1 38 38 H 1.09000 * 109.46794 * 60.00162 * 19 18 2 39 39 H 1.08992 * 109.47035 * 299.99855 * 19 18 2 40 40 H 1.07993 * 119.92724 * 359.97438 * 21 20 19 41 41 H 1.08003 * 120.07687 * 179.97438 * 22 21 20 42 42 H 1.07999 * 120.08232 * 179.69881 * 26 23 22 43 43 H 1.08002 * 119.92853 * 180.27179 * 27 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5000 -0.8263 1.1906 6 6 4.1730 -1.4291 2.1908 7 8 3.5699 -1.8841 3.1395 8 6 5.6750 -1.5366 2.1306 9 16 6.2784 -2.3899 3.6084 10 6 8.0101 -2.3771 3.2837 11 1 8.3863 -1.9238 2.3784 12 6 8.8907 -2.9485 4.1916 13 7 10.1846 -2.9384 3.9492 14 14 8.2400 -3.7318 5.7575 15 1 7.9530 -5.1678 5.5105 16 1 9.2571 -3.6082 6.8325 17 1 6.9927 -3.0425 6.1746 18 7 2.0197 -0.6924 -1.1994 19 6 2.0824 0.2227 -2.3469 20 6 2.5885 -0.5214 -3.5557 21 6 1.6927 -1.1517 -4.4012 22 6 2.1490 -1.8342 -5.5097 23 6 3.5183 -1.8876 -5.7780 24 6 3.9991 -2.5938 -6.9273 25 7 4.3782 -3.1573 -7.8378 26 6 4.4170 -1.2538 -4.9176 27 6 3.9466 -0.5695 -3.8160 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.7516 -0.1583 2.1370 32 1 1.6055 -1.7198 1.2952 33 1 3.9824 -0.4621 0.4319 34 1 5.9637 -2.0989 1.2426 35 1 6.1093 -0.5379 2.0855 36 1 10.7999 -3.3381 4.5835 37 1 2.9173 -1.1205 -1.0287 38 1 2.7588 1.0462 -2.1182 39 1 1.0871 0.6163 -2.5525 40 1 0.6339 -1.1092 -4.1928 41 1 1.4488 -2.3260 -6.1687 42 1 5.4777 -1.2953 -5.1165 43 1 4.6402 -0.0751 -3.1521 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752863243.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:47:57 Heat of formation + Delta-G solvation = 14.048927 kcal Electronic energy + Delta-G solvation = -24213.984340 eV Core-core repulsion = 20578.204163 eV Total energy + Delta-G solvation = -3635.780177 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.16064 -39.52000 -37.74584 -36.75663 -34.36703 -32.77581 -32.46285 -31.58115 -30.46508 -29.50414 -26.59478 -25.75829 -25.41663 -23.27269 -22.41883 -21.02786 -20.59912 -19.37839 -18.04055 -16.99603 -16.44478 -16.38951 -16.09257 -15.83403 -15.18455 -15.04714 -14.98714 -14.90080 -14.38122 -14.03134 -14.01913 -13.71888 -13.45787 -13.33110 -13.12021 -13.02387 -12.82387 -12.81359 -12.62442 -12.44025 -12.14724 -11.89815 -11.65580 -11.51505 -11.30063 -11.23468 -11.02943 -10.63499 -9.88577 -9.60976 -9.51480 -9.32873 -9.10841 -9.01821 -8.91086 -8.53652 -6.95169 -6.31546 -4.03667 0.26593 0.86395 2.28663 2.48909 2.70373 2.89915 3.23709 3.31739 3.36355 3.46921 3.48417 3.59484 3.80165 4.22742 4.29957 4.30743 4.38817 4.40666 4.67025 4.75001 4.81054 4.83378 4.93193 5.07604 5.07857 5.10596 5.20843 5.28652 5.37449 5.45390 5.49362 5.53017 5.69571 5.70502 5.72780 5.81564 5.91284 5.94848 6.02768 6.30459 6.38053 6.50619 6.86957 7.09314 7.44990 7.91453 8.38450 8.39864 9.14627 10.77678 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.010321 B = 0.002415 C = 0.002018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2712.351274 B =11593.378820 C =13870.637219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.074 3.926 3 H 0.053 0.947 4 C 0.118 3.882 5 N -0.741 5.741 6 C 0.532 3.468 7 O -0.515 6.515 8 C -0.125 4.125 9 S -0.140 6.140 10 C -0.522 4.522 11 H 0.088 0.912 12 C 0.096 3.904 13 N -0.880 5.880 14 Si 0.857 3.143 15 H -0.267 1.267 16 H -0.274 1.274 17 H -0.235 1.235 18 N -0.681 5.681 19 C 0.091 3.909 20 C -0.054 4.054 21 C -0.098 4.098 22 C -0.071 4.071 23 C -0.030 4.030 24 C 0.254 3.746 25 N -0.418 5.418 26 C -0.067 4.067 27 C -0.114 4.114 28 H 0.061 0.939 29 H 0.058 0.942 30 H 0.067 0.933 31 H 0.074 0.926 32 H 0.077 0.923 33 H 0.394 0.606 34 H 0.097 0.903 35 H 0.096 0.904 36 H 0.271 0.729 37 H 0.347 0.653 38 H 0.046 0.954 39 H 0.087 0.913 40 H 0.135 0.865 41 H 0.132 0.868 42 H 0.134 0.866 43 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.251 10.031 -16.949 28.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.036 4.036 3 H 0.071 0.929 4 C -0.007 4.007 5 N -0.396 5.396 6 C 0.318 3.682 7 O -0.389 6.389 8 C -0.276 4.276 9 S 0.086 5.914 10 C -0.669 4.669 11 H 0.106 0.894 12 C -0.113 4.113 13 N -0.517 5.517 14 Si 0.681 3.319 15 H -0.192 1.192 16 H -0.199 1.199 17 H -0.159 1.159 18 N -0.315 5.315 19 C -0.037 4.037 20 C -0.055 4.055 21 C -0.116 4.116 22 C -0.092 4.092 23 C -0.034 4.034 24 C -0.062 4.062 25 N -0.093 5.093 26 C -0.088 4.088 27 C -0.133 4.133 28 H 0.080 0.920 29 H 0.077 0.923 30 H 0.086 0.914 31 H 0.092 0.908 32 H 0.095 0.905 33 H 0.228 0.772 34 H 0.115 0.885 35 H 0.115 0.885 36 H 0.081 0.919 37 H 0.167 0.833 38 H 0.064 0.936 39 H 0.105 0.895 40 H 0.153 0.847 41 H 0.150 0.850 42 H 0.152 0.848 43 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -21.107 8.101 -16.856 28.200 hybrid contribution 1.698 1.017 -0.298 2.001 sum -19.410 9.118 -17.154 27.462 Atomic orbital electron populations 1.21735 0.93202 1.03032 1.01690 1.21806 0.96982 0.96131 0.88656 0.92888 1.21536 0.80211 1.01799 0.97105 1.46002 1.07260 1.61977 1.24406 1.20271 0.89427 0.76784 0.81712 1.90712 1.69857 1.45863 1.32478 1.23283 0.93308 1.05494 1.05472 1.84817 1.06956 1.75424 1.24229 1.22304 0.88626 1.44752 1.11255 0.89392 1.24716 0.94106 0.94512 0.97988 1.69935 1.01563 1.43442 1.36724 0.86734 0.80792 0.81263 0.83064 1.19175 1.19932 1.15924 1.60550 1.34299 1.32784 1.03895 1.21039 1.01488 0.92943 0.88232 1.20040 0.93289 0.96647 0.95560 1.20971 1.00322 0.96708 0.93618 1.21194 0.93334 0.97420 0.97223 1.16029 0.93972 1.01430 0.91936 1.25756 0.93767 0.93526 0.93114 1.81274 1.07665 1.09319 1.11020 1.21194 0.99621 0.94775 0.93198 1.21061 0.95127 0.99620 0.97450 0.92049 0.92321 0.91429 0.90752 0.90473 0.77240 0.88458 0.88523 0.91910 0.83266 0.93623 0.89492 0.84729 0.84958 0.84777 0.84888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.77 9.41 37.16 0.35 -0.42 16 2 C 0.07 0.47 2.81 -67.71 -0.19 0.28 16 3 H 0.05 0.31 7.80 -51.93 -0.40 -0.10 16 4 C 0.12 1.12 5.31 -4.04 -0.02 1.09 16 5 N -0.74 -8.11 4.99 -60.29 -0.30 -8.41 16 6 C 0.53 8.77 7.85 -10.98 -0.09 8.69 16 7 O -0.52 -10.63 15.86 5.56 0.09 -10.54 16 8 C -0.12 -2.28 6.16 36.01 0.22 -2.05 16 9 S -0.14 -3.47 18.55 -107.50 -1.99 -5.47 16 10 C -0.52 -14.74 10.04 30.94 0.31 -14.43 16 11 H 0.09 2.58 8.03 -52.48 -0.42 2.16 16 12 C 0.10 2.76 5.50 -17.43 -0.10 2.66 16 13 N -0.88 -26.28 13.97 55.49 0.78 -25.50 16 14 Si 0.86 21.53 27.74 -169.99 -4.71 16.82 16 15 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 16 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 17 H -0.24 -5.89 6.74 56.52 0.38 -5.51 16 18 N -0.68 -4.19 6.29 -108.00 -0.68 -4.87 16 19 C 0.09 0.42 5.60 -4.98 -0.03 0.39 16 20 C -0.05 -0.28 5.40 -104.53 -0.56 -0.85 16 21 C -0.10 -0.49 9.68 -39.64 -0.38 -0.87 16 22 C -0.07 -0.39 9.76 -39.17 -0.38 -0.77 16 23 C -0.03 -0.20 5.73 -106.93 -0.61 -0.82 16 24 C 0.25 2.30 15.33 -22.47 -0.34 1.96 16 25 N -0.42 -4.88 18.54 41.83 0.78 -4.10 16 26 C -0.07 -0.40 9.76 -39.17 -0.38 -0.79 16 27 C -0.11 -0.60 9.68 -39.64 -0.38 -0.99 16 28 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.06 0.28 7.45 -51.93 -0.39 -0.11 16 30 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 32 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 33 H 0.39 3.16 7.37 -40.82 -0.30 2.86 16 34 H 0.10 1.63 8.14 -51.92 -0.42 1.21 16 35 H 0.10 1.62 8.14 -51.91 -0.42 1.20 16 36 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 37 H 0.35 2.35 6.70 -39.29 -0.26 2.09 16 38 H 0.05 0.18 7.99 -51.93 -0.42 -0.23 16 39 H 0.09 0.34 7.38 -51.93 -0.38 -0.04 16 40 H 0.13 0.48 8.06 -52.49 -0.42 0.06 16 41 H 0.13 0.53 8.06 -52.48 -0.42 0.10 16 42 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 43 H 0.13 0.52 8.06 -52.49 -0.42 0.09 16 LS Contribution 387.02 15.07 5.83 5.83 Total: -1.00 -34.99 387.02 -8.77 -43.76 By element: Atomic # 1 Polarization: 5.36 SS G_CDS: -5.96 Total: -0.60 kcal Atomic # 6 Polarization: -4.32 SS G_CDS: -2.59 Total: -6.91 kcal Atomic # 7 Polarization: -43.46 SS G_CDS: 0.57 Total: -42.89 kcal Atomic # 8 Polarization: -10.63 SS G_CDS: 0.09 Total: -10.54 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -4.71 Total: 16.82 kcal Atomic # 16 Polarization: -3.47 SS G_CDS: -1.99 Total: -5.47 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -34.99 -8.77 -43.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752863243.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.805 kcal (2) G-P(sol) polarization free energy of solvation -34.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.756 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds