Wall clock time and date at job start Tue Mar 31 2020 18:47:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.46796 * 2 1 4 4 C 1.53002 * 109.47004 * 119.99786 * 2 1 3 5 5 N 1.46502 * 109.46882 * 175.00159 * 4 2 1 6 6 C 1.34781 * 119.99868 * 180.02562 * 5 4 2 7 7 O 1.21280 * 120.00029 * 359.97438 * 6 5 4 8 8 C 1.50703 * 119.99496 * 180.02562 * 6 5 4 9 9 S 1.81001 * 109.46861 * 179.97438 * 8 6 5 10 10 C 1.76196 * 100.00355 * 179.97438 * 9 8 6 11 11 H 1.08003 * 119.99538 * 0.02562 * 10 9 8 12 12 C 1.38796 * 120.00067 * 179.97438 * 10 9 8 13 13 N 1.31636 * 119.99991 * 180.02562 * 12 10 9 14 14 Si 1.86795 * 120.00096 * 0.02562 * 12 10 9 15 15 H 1.48501 * 109.47177 * 89.99780 * 14 12 10 16 16 H 1.48501 * 109.47092 * 209.99584 * 14 12 10 17 17 H 1.48494 * 109.47470 * 329.99741 * 14 12 10 18 18 N 1.46897 * 109.47181 * 240.00258 * 2 1 3 19 19 C 1.46901 * 111.00142 * 84.99770 * 18 2 1 20 20 C 1.50696 * 109.46885 * 179.97438 * 19 18 2 21 21 C 1.38365 * 119.84509 * 90.00234 * 20 19 18 22 22 C 1.37947 * 120.14940 * 179.97438 * 21 20 19 23 23 C 1.39629 * 119.84839 * 359.97438 * 22 21 20 24 24 C 1.43205 * 120.15217 * 180.02562 * 23 22 21 25 25 N 8.91693 * 108.62759 * 248.05882 * 2 1 3 26 26 C 1.39630 * 119.69955 * 0.27680 * 23 22 21 27 27 C 1.37952 * 119.84588 * 359.42138 * 26 23 22 28 28 H 1.09005 * 109.47506 * 299.99590 * 1 2 3 29 29 H 1.08991 * 109.47111 * 60.00202 * 1 2 3 30 30 H 1.08998 * 109.46796 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47262 * 295.00031 * 4 2 1 32 32 H 1.08996 * 109.47137 * 55.00785 * 4 2 1 33 33 H 0.97004 * 119.99979 * 0.02562 * 5 4 2 34 34 H 1.08997 * 109.47157 * 299.99567 * 8 6 5 35 35 H 1.09002 * 109.47402 * 60.00346 * 8 6 5 36 36 H 0.96989 * 120.00064 * 180.02562 * 13 12 10 37 37 H 1.00904 * 110.99744 * 208.95649 * 18 2 1 38 38 H 1.09000 * 109.46794 * 60.00162 * 19 18 2 39 39 H 1.08992 * 109.47035 * 299.99855 * 19 18 2 40 40 H 1.07993 * 119.92724 * 359.97438 * 21 20 19 41 41 H 1.08003 * 120.07687 * 179.97438 * 22 21 20 42 42 H 1.07999 * 120.08232 * 179.69881 * 26 23 22 43 43 H 1.08002 * 119.92853 * 180.27179 * 27 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5000 -0.8263 1.1906 6 6 4.1730 -1.4291 2.1908 7 8 3.5699 -1.8841 3.1395 8 6 5.6750 -1.5366 2.1306 9 16 6.2784 -2.3899 3.6084 10 6 8.0101 -2.3771 3.2837 11 1 8.3863 -1.9238 2.3784 12 6 8.8907 -2.9485 4.1916 13 7 10.1846 -2.9384 3.9492 14 14 8.2400 -3.7318 5.7575 15 1 7.9530 -5.1678 5.5105 16 1 9.2571 -3.6082 6.8325 17 1 6.9927 -3.0425 6.1746 18 7 2.0197 -0.6924 -1.1994 19 6 2.0824 0.2227 -2.3469 20 6 2.5885 -0.5214 -3.5557 21 6 1.6927 -1.1517 -4.4012 22 6 2.1490 -1.8342 -5.5097 23 6 3.5183 -1.8876 -5.7780 24 6 3.9991 -2.5938 -6.9273 25 7 4.3782 -3.1573 -7.8378 26 6 4.4170 -1.2538 -4.9176 27 6 3.9466 -0.5695 -3.8160 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.7516 -0.1583 2.1370 32 1 1.6055 -1.7198 1.2952 33 1 3.9824 -0.4621 0.4319 34 1 5.9637 -2.0989 1.2426 35 1 6.1093 -0.5379 2.0855 36 1 10.7999 -3.3381 4.5835 37 1 2.9173 -1.1205 -1.0287 38 1 2.7588 1.0462 -2.1182 39 1 1.0871 0.6163 -2.5525 40 1 0.6339 -1.1092 -4.1928 41 1 1.4488 -2.3260 -6.1687 42 1 5.4777 -1.2953 -5.1165 43 1 4.6402 -0.0751 -3.1521 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752863243.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:47:56 Heat of formation + Delta-G solvation = -9.727849 kcal Electronic energy + Delta-G solvation = -24215.015379 eV Core-core repulsion = 20578.204163 eV Total energy + Delta-G solvation = -3636.811216 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.83969 -40.44512 -38.46558 -37.50296 -35.24502 -34.65785 -33.46722 -31.97746 -31.29212 -30.49699 -27.88170 -27.13803 -26.23824 -23.67147 -22.87704 -21.83763 -21.58798 -19.90424 -19.87467 -18.07074 -17.54814 -17.10808 -17.06050 -16.71830 -16.50385 -16.15867 -15.73778 -15.62149 -15.39742 -15.07851 -14.95711 -14.73288 -14.39201 -14.22829 -14.18221 -13.96351 -13.64717 -13.37280 -13.34202 -13.26644 -13.11954 -12.99638 -12.91988 -12.69220 -12.49663 -12.08213 -11.93495 -11.86069 -11.72716 -11.16155 -11.00577 -10.51260 -10.15949 -9.91192 -9.78977 -9.33806 -8.97812 -8.50598 -6.20805 -0.21597 0.47103 1.00688 1.32336 1.47805 1.57026 1.58231 1.58515 1.90165 2.22171 2.26812 2.72912 2.83718 2.87954 2.89020 3.32811 3.74211 3.86568 3.90028 3.93736 4.02283 4.23560 4.27522 4.41105 4.42756 4.44739 4.49390 4.69168 4.73576 4.75144 4.89378 4.91328 5.03765 5.12410 5.13504 5.28931 5.35254 5.39615 5.51919 5.63883 5.71870 5.91429 6.06940 6.12863 6.37356 6.41510 6.42409 6.95060 7.18909 8.61688 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.010321 B = 0.002415 C = 0.002018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2712.351274 B =11593.378820 C =13870.637219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.086 3.914 3 H 0.069 0.931 4 C 0.117 3.883 5 N -0.713 5.713 6 C 0.537 3.463 7 O -0.562 6.562 8 C -0.112 4.112 9 S -0.178 6.178 10 C -0.526 4.526 11 H 0.064 0.936 12 C 0.045 3.955 13 N -0.918 5.918 14 Si 0.913 3.087 15 H -0.264 1.264 16 H -0.261 1.261 17 H -0.236 1.236 18 N -0.688 5.688 19 C 0.093 3.907 20 C -0.053 4.053 21 C -0.099 4.099 22 C -0.070 4.070 23 C -0.048 4.048 24 C 0.277 3.723 25 N -0.473 5.473 26 C -0.073 4.073 27 C -0.118 4.118 28 H 0.064 0.936 29 H 0.073 0.927 30 H 0.056 0.944 31 H 0.070 0.930 32 H 0.062 0.938 33 H 0.412 0.588 34 H 0.115 0.885 35 H 0.115 0.885 36 H 0.276 0.724 37 H 0.342 0.658 38 H 0.058 0.942 39 H 0.098 0.902 40 H 0.152 0.848 41 H 0.144 0.856 42 H 0.139 0.861 43 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.212 11.440 -16.984 30.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.024 4.024 3 H 0.087 0.913 4 C -0.006 4.006 5 N -0.368 5.368 6 C 0.322 3.678 7 O -0.440 6.440 8 C -0.262 4.262 9 S 0.048 5.952 10 C -0.674 4.674 11 H 0.082 0.918 12 C -0.161 4.161 13 N -0.556 5.556 14 Si 0.735 3.265 15 H -0.188 1.188 16 H -0.185 1.185 17 H -0.160 1.160 18 N -0.322 5.322 19 C -0.035 4.035 20 C -0.054 4.054 21 C -0.118 4.118 22 C -0.090 4.090 23 C -0.052 4.052 24 C -0.037 4.037 25 N -0.149 5.149 26 C -0.093 4.093 27 C -0.136 4.136 28 H 0.083 0.917 29 H 0.092 0.908 30 H 0.075 0.925 31 H 0.088 0.912 32 H 0.081 0.919 33 H 0.249 0.751 34 H 0.133 0.867 35 H 0.133 0.867 36 H 0.086 0.914 37 H 0.162 0.838 38 H 0.077 0.923 39 H 0.117 0.883 40 H 0.169 0.831 41 H 0.162 0.838 42 H 0.156 0.844 43 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -23.078 9.546 -16.946 30.181 hybrid contribution 2.210 0.692 -0.399 2.350 sum -20.869 10.238 -17.345 29.003 Atomic orbital electron populations 1.21728 0.92451 1.02652 1.02636 1.21720 0.97377 0.96214 0.87063 0.91347 1.21665 0.78594 1.01477 0.98904 1.45721 1.08069 1.59719 1.23243 1.19928 0.88554 0.77056 0.82243 1.90704 1.70325 1.48345 1.34591 1.23278 0.94815 1.05716 1.02437 1.84762 1.04538 1.77021 1.28857 1.22460 0.90784 1.43872 1.10259 0.91787 1.25558 0.94366 0.95153 1.00989 1.70014 1.02713 1.44713 1.38150 0.85881 0.80408 0.80326 0.79857 1.18829 1.18497 1.15967 1.60565 1.34098 1.33409 1.04173 1.21096 1.02518 0.92736 0.87133 1.20206 0.93260 0.96206 0.95709 1.21199 1.01251 0.96169 0.93166 1.21373 0.92876 0.97207 0.97588 1.16153 0.94864 1.02494 0.91695 1.26140 0.92390 0.92391 0.92765 1.81284 1.09399 1.11410 1.12826 1.21331 0.99884 0.94742 0.93362 1.21261 0.95649 0.99408 0.97291 0.91668 0.90845 0.92492 0.91196 0.91919 0.75094 0.86675 0.86689 0.91423 0.83754 0.92349 0.88328 0.83054 0.83790 0.84352 0.83363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.11 9.41 71.98 0.68 -0.43 16 2 C 0.09 0.80 2.81 44.92 0.13 0.92 16 3 H 0.07 0.48 7.80 -2.39 -0.02 0.46 16 4 C 0.12 1.95 5.31 86.38 0.46 2.41 16 5 N -0.71 -13.69 4.99 -463.05 -2.31 -16.00 16 6 C 0.54 16.73 7.85 87.66 0.69 17.42 16 7 O -0.56 -22.71 15.86 -3.03 -0.05 -22.76 16 8 C -0.11 -3.87 6.16 71.24 0.44 -3.43 16 9 S -0.18 -8.72 18.55 -56.49 -1.05 -9.77 16 10 C -0.53 -29.90 10.04 67.95 0.68 -29.22 16 11 H 0.06 3.82 8.03 -2.91 -0.02 3.79 16 12 C 0.04 2.58 5.50 84.86 0.47 3.05 16 13 N -0.92 -55.30 13.97 21.65 0.30 -55.00 16 14 Si 0.91 44.47 27.74 68.60 1.90 46.37 16 15 H -0.26 -12.57 7.11 99.48 0.71 -11.87 16 16 H -0.26 -11.94 7.11 99.48 0.71 -11.24 16 17 H -0.24 -11.42 6.74 99.48 0.67 -10.75 16 18 N -0.69 -6.09 6.29 -495.60 -3.12 -9.21 16 19 C 0.09 0.49 5.60 85.56 0.48 0.97 16 20 C -0.05 -0.38 5.40 -19.81 -0.11 -0.49 16 21 C -0.10 -0.72 9.68 22.23 0.22 -0.51 16 22 C -0.07 -0.64 9.76 22.54 0.22 -0.42 16 23 C -0.05 -0.61 5.73 -21.36 -0.12 -0.73 16 24 C 0.28 5.06 15.33 88.33 1.35 6.42 16 25 N -0.47 -11.40 18.54 19.00 0.35 -11.05 16 26 C -0.07 -0.77 9.76 22.54 0.22 -0.55 16 27 C -0.12 -0.95 9.68 22.23 0.22 -0.73 16 28 H 0.06 0.49 8.14 -2.38 -0.02 0.47 16 29 H 0.07 0.41 7.45 -2.39 -0.02 0.39 16 30 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.41 5.13 7.37 -92.71 -0.68 4.44 16 34 H 0.12 3.61 8.14 -2.40 -0.02 3.59 16 35 H 0.11 3.60 8.14 -2.39 -0.02 3.58 16 36 H 0.28 15.43 8.31 -92.72 -0.77 14.66 16 37 H 0.34 3.49 6.70 -89.69 -0.60 2.89 16 38 H 0.06 0.20 7.99 -2.39 -0.02 0.18 16 39 H 0.10 0.34 7.38 -2.39 -0.02 0.32 16 40 H 0.15 0.58 8.06 -2.91 -0.02 0.55 16 41 H 0.14 0.91 8.06 -2.91 -0.02 0.89 16 42 H 0.14 1.26 8.06 -2.91 -0.02 1.24 16 43 H 0.15 0.69 8.06 -2.91 -0.02 0.67 16 Total: -1.00 -77.13 387.02 1.77 -75.36 By element: Atomic # 1 Polarization: 7.67 SS G_CDS: -0.28 Total: 7.39 kcal Atomic # 6 Polarization: -11.34 SS G_CDS: 6.01 Total: -5.33 kcal Atomic # 7 Polarization: -86.49 SS G_CDS: -4.77 Total: -91.26 kcal Atomic # 8 Polarization: -22.71 SS G_CDS: -0.05 Total: -22.76 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 1.90 Total: 46.37 kcal Atomic # 16 Polarization: -8.72 SS G_CDS: -1.05 Total: -9.77 kcal Total: -77.13 1.77 -75.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752863243.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.629 kcal (2) G-P(sol) polarization free energy of solvation -77.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds