Wall clock time and date at job start Tue Mar 31 2020 18:58:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46498 * 109.46998 * 2 1 4 4 C 1.36938 * 120.00668 * 275.31007 * 3 2 1 5 5 H 1.08007 * 119.99320 * 37.57678 * 4 3 2 6 6 C 1.38801 * 120.00464 * 217.57978 * 4 3 2 7 7 N 1.31616 * 120.00024 * 21.42183 * 6 4 3 8 8 Si 1.86803 * 120.00287 * 201.42373 * 6 4 3 9 9 H 1.48491 * 109.47069 * 59.99708 * 8 6 4 10 10 H 1.48496 * 109.47135 * 180.02562 * 8 6 4 11 11 H 1.48506 * 109.46716 * 300.00142 * 8 6 4 12 12 C 1.46504 * 119.99822 * 95.30906 * 3 2 1 13 13 C 1.53001 * 109.47369 * 270.00319 * 12 3 2 14 14 N 1.46499 * 109.47031 * 180.02562 * 13 12 3 15 15 C 1.34778 * 120.00004 * 180.02562 * 14 13 12 16 16 O 1.21592 * 119.99721 * 359.97438 * 15 14 13 17 17 C 1.47590 * 120.00245 * 179.97438 * 15 14 13 18 18 C 1.40192 * 120.12299 * 359.97438 * 17 15 14 19 19 C 1.35759 * 120.61382 * 180.29606 * 18 17 15 20 20 C 1.41238 * 120.63284 * 359.45358 * 19 18 17 21 21 N 1.34414 * 129.48307 * 180.22032 * 20 19 18 22 22 C 1.28051 * 117.91729 * 180.29535 * 21 20 19 23 23 C 1.50704 * 124.24437 * 180.02562 * 22 21 20 24 24 S 1.70647 * 111.51853 * 0.02562 * 22 21 20 25 25 C 1.40153 * 118.74154 * 0.53605 * 20 19 18 26 26 C 1.38906 * 120.41206 * 359.73889 * 25 20 19 27 27 H 1.09004 * 109.46991 * 299.99722 * 1 2 3 28 28 H 1.08999 * 109.46905 * 59.99696 * 1 2 3 29 29 H 1.08998 * 109.47009 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47059 * 240.00821 * 2 1 3 31 31 H 1.08997 * 109.47359 * 120.00579 * 2 1 3 32 32 H 0.97005 * 120.00251 * 179.97438 * 7 6 4 33 33 H 1.08998 * 109.47268 * 149.99708 * 12 3 2 34 34 H 1.09006 * 109.46981 * 30.00544 * 12 3 2 35 35 H 1.08994 * 109.47440 * 59.99980 * 13 12 3 36 36 H 1.09000 * 109.46762 * 299.99568 * 13 12 3 37 37 H 0.96996 * 120.00003 * 359.97438 * 14 13 12 38 38 H 1.08005 * 119.69583 * 0.02562 * 18 17 15 39 39 H 1.07997 * 119.68130 * 179.70071 * 19 18 17 40 40 H 1.09006 * 109.46904 * 269.96293 * 23 22 21 41 41 H 1.09003 * 109.46572 * 29.95733 * 23 22 21 42 42 H 1.09000 * 109.47725 * 149.95760 * 23 22 21 43 43 H 1.08002 * 120.07577 * 179.97438 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1431 2.0635 -1.1808 5 1 1.4105 1.9279 -1.9627 6 6 3.2111 2.9290 -1.3727 7 7 4.3026 2.7982 -0.6490 8 14 3.0993 4.2797 -2.6583 9 1 1.9627 5.1786 -2.3342 10 1 4.3622 5.0609 -2.6667 11 1 2.8843 3.6727 -3.9965 12 6 2.3732 2.0327 1.2633 13 6 1.1425 2.7382 1.8367 14 7 1.4976 3.3901 3.0997 15 6 0.5650 4.0767 3.7891 16 8 -0.5709 4.1555 3.3625 17 6 0.9225 4.7331 5.0618 18 6 2.2312 4.6435 5.5562 19 6 2.5695 5.2383 6.7288 20 6 1.6126 5.9685 7.4676 21 7 1.7512 6.6244 8.6327 22 6 0.7222 7.2152 9.1142 23 6 0.7167 7.9903 10.4066 24 16 -0.6421 7.0150 8.1089 25 6 0.3043 6.0580 6.9731 26 6 -0.0384 5.4429 5.7757 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8934 -0.5137 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 5.0491 3.4029 -0.7834 33 1 3.1616 2.7641 1.0861 34 1 2.7256 1.2833 1.9721 35 1 0.3541 2.0068 2.0140 36 1 0.7903 3.4876 1.1279 37 1 2.4036 3.3269 3.4401 38 1 2.9763 4.0925 5.0014 39 1 3.5810 5.1556 7.0981 40 1 0.4632 7.3223 11.2298 41 1 1.7043 8.4188 10.5774 42 1 -0.0212 8.7904 10.3475 43 1 -1.0484 5.5150 5.3999 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753093077.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:58:38 Heat of formation + Delta-G solvation = 36.682309 kcal Electronic energy + Delta-G solvation = -25098.225517 eV Core-core repulsion = 21463.426797 eV Total energy + Delta-G solvation = -3634.798720 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.81566 -39.38098 -37.01332 -36.29196 -34.24426 -32.07957 -31.90568 -31.42097 -29.89217 -28.76708 -27.30248 -24.64054 -24.32163 -23.27563 -21.74632 -21.55134 -20.44449 -20.12281 -18.90220 -17.66600 -16.58386 -16.21917 -16.05733 -15.53240 -15.19710 -15.11122 -14.75931 -14.21444 -14.11498 -13.93546 -13.77217 -13.54413 -13.44909 -13.32767 -12.80368 -12.63715 -12.57887 -12.40169 -12.10202 -11.64514 -11.53018 -11.16949 -11.13739 -10.76782 -10.66878 -10.55137 -10.48423 -10.12303 -9.99339 -9.92320 -9.91765 -9.65733 -8.95525 -8.62885 -8.50514 -8.38174 -6.65214 -5.86324 -3.44934 -0.11972 0.86914 0.87950 1.36039 1.75342 2.94968 3.33475 3.40472 3.41890 3.44988 3.48627 3.68466 4.27606 4.44133 4.56409 4.70924 4.81835 4.86928 4.96324 4.99229 5.20014 5.25683 5.41823 5.50672 5.53209 5.78852 5.86678 5.96831 5.99087 6.08654 6.13404 6.30087 6.36474 6.39473 6.47788 6.66481 6.78683 6.89745 6.97729 7.14622 7.25801 7.49632 7.77922 7.81547 8.43037 8.46690 9.11942 9.73817 10.31767 11.13944 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.018416 B = 0.002376 C = 0.002274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1520.044307 B =11783.961037 C =12308.666327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.141 3.859 3 N -0.579 5.579 4 C -0.261 4.261 5 H 0.061 0.939 6 C 0.014 3.986 7 N -0.888 5.888 8 Si 0.897 3.103 9 H -0.281 1.281 10 H -0.290 1.290 11 H -0.280 1.280 12 C 0.137 3.863 13 C 0.096 3.904 14 N -0.710 5.710 15 C 0.552 3.448 16 O -0.541 6.541 17 C -0.110 4.110 18 C -0.075 4.075 19 C -0.070 4.070 20 C 0.102 3.898 21 N -0.471 5.471 22 C 0.091 3.909 23 C -0.083 4.083 24 S 0.109 5.891 25 C -0.195 4.195 26 C -0.008 4.008 27 H 0.044 0.956 28 H 0.050 0.950 29 H 0.037 0.963 30 H 0.046 0.954 31 H 0.034 0.966 32 H 0.256 0.744 33 H 0.099 0.901 34 H 0.029 0.971 35 H 0.055 0.945 36 H 0.067 0.933 37 H 0.397 0.603 38 H 0.143 0.857 39 H 0.142 0.858 40 H 0.091 0.909 41 H 0.093 0.907 42 H 0.085 0.915 43 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.243 7.233 21.346 23.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.015 3.985 3 N -0.300 5.300 4 C -0.391 4.391 5 H 0.079 0.921 6 C -0.187 4.187 7 N -0.530 5.530 8 Si 0.726 3.274 9 H -0.208 1.208 10 H -0.216 1.216 11 H -0.206 1.206 12 C 0.009 3.991 13 C -0.029 4.029 14 N -0.361 5.361 15 C 0.337 3.663 16 O -0.420 6.420 17 C -0.117 4.117 18 C -0.096 4.096 19 C -0.091 4.091 20 C -0.019 4.019 21 N -0.186 5.186 22 C -0.192 4.192 23 C -0.143 4.143 24 S 0.365 5.635 25 C -0.313 4.313 26 C -0.032 4.032 27 H 0.063 0.937 28 H 0.069 0.931 29 H 0.056 0.944 30 H 0.065 0.935 31 H 0.053 0.947 32 H 0.066 0.934 33 H 0.117 0.883 34 H 0.048 0.952 35 H 0.073 0.927 36 H 0.085 0.915 37 H 0.232 0.768 38 H 0.161 0.839 39 H 0.159 0.841 40 H 0.110 0.890 41 H 0.111 0.889 42 H 0.104 0.896 43 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -6.398 7.735 21.389 23.627 hybrid contribution 1.045 0.300 -0.936 1.435 sum -5.352 8.036 20.453 22.617 Atomic orbital electron populations 1.22392 0.99902 0.99105 1.01406 1.20885 0.91767 0.86942 0.98929 1.43597 1.76047 1.08279 1.02033 1.18976 1.04798 1.21352 0.93982 0.92101 1.25181 0.94146 1.01193 0.98145 1.69980 1.03124 1.37343 1.42516 0.86464 0.76995 0.82308 0.81630 1.20754 1.21572 1.20600 1.21068 0.94504 0.97000 0.86514 1.22552 1.01313 0.96635 0.82384 1.46067 1.12939 1.52569 1.24510 1.18022 0.85450 0.79171 0.83638 1.90779 1.20200 1.61368 1.69657 1.20043 0.94205 1.01056 0.96443 1.20918 0.95515 0.97981 0.95227 1.20279 0.98764 0.96315 0.93766 1.19308 0.92362 0.98978 0.91293 1.66146 1.30358 1.10850 1.11216 1.26842 0.91494 0.99418 1.01493 1.20587 1.04941 0.98800 0.90009 1.83983 1.14032 1.50431 1.15065 1.23725 0.97606 1.07739 1.02234 1.20422 1.00221 0.92394 0.90119 0.93666 0.93095 0.94438 0.93541 0.94709 0.93436 0.88343 0.95219 0.92705 0.91468 0.76795 0.83946 0.84068 0.89023 0.88858 0.89618 0.83711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.09 10.21 37.16 0.38 -2.71 16 2 C 0.14 2.91 6.44 -4.04 -0.03 2.88 16 3 N -0.58 -13.83 2.43 -173.23 -0.42 -14.25 16 4 C -0.26 -6.93 9.45 -15.06 -0.14 -7.07 16 5 H 0.06 1.63 7.92 -52.48 -0.42 1.21 16 6 C 0.01 0.37 4.95 -17.44 -0.09 0.28 16 7 N -0.89 -24.40 11.47 55.49 0.64 -23.76 16 8 Si 0.90 21.25 29.60 -169.99 -5.03 16.21 16 9 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 10 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 11 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 12 C 0.14 2.96 5.45 -4.04 -0.02 2.94 16 13 C 0.10 1.91 6.00 -4.04 -0.02 1.89 16 14 N -0.71 -11.66 5.51 -61.33 -0.34 -12.00 16 15 C 0.55 9.31 7.76 -12.44 -0.10 9.22 16 16 O -0.54 -11.05 16.34 5.28 0.09 -10.97 16 17 C -0.11 -1.52 5.87 -105.00 -0.62 -2.13 16 18 C -0.07 -0.84 9.44 -39.74 -0.38 -1.22 16 19 C -0.07 -0.78 10.03 -39.33 -0.39 -1.17 16 20 C 0.10 1.27 7.00 -84.88 -0.59 0.68 16 21 N -0.47 -5.62 10.56 -8.96 -0.09 -5.71 16 22 C 0.09 0.85 7.29 -13.85 -0.10 0.75 16 23 C -0.08 -0.42 10.44 36.01 0.38 -0.05 16 24 S 0.11 1.03 23.11 -107.50 -2.48 -1.46 16 25 C -0.19 -2.40 6.54 -38.62 -0.25 -2.65 16 26 C -0.01 -0.11 9.62 -38.99 -0.37 -0.49 16 27 H 0.04 0.83 6.64 -51.93 -0.34 0.49 16 28 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 31 H 0.03 0.66 7.83 -51.93 -0.41 0.26 16 32 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 33 H 0.10 2.39 5.52 -51.93 -0.29 2.11 16 34 H 0.03 0.59 7.86 -51.93 -0.41 0.19 16 35 H 0.05 1.11 6.64 -51.93 -0.34 0.77 16 36 H 0.07 1.53 8.14 -51.93 -0.42 1.11 16 37 H 0.40 5.39 6.49 -40.82 -0.26 5.13 16 38 H 0.14 1.28 6.38 -52.48 -0.33 0.94 16 39 H 0.14 1.26 8.06 -52.49 -0.42 0.84 16 40 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 41 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 42 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 43 H 0.15 1.90 7.64 -52.49 -0.40 1.50 16 LS Contribution 373.05 15.07 5.62 5.62 Total: -1.00 -31.95 373.05 -10.10 -42.04 By element: Atomic # 1 Polarization: 8.84 SS G_CDS: -5.72 Total: 3.12 kcal Atomic # 6 Polarization: 3.49 SS G_CDS: -2.35 Total: 1.14 kcal Atomic # 7 Polarization: -55.51 SS G_CDS: -0.22 Total: -55.72 kcal Atomic # 8 Polarization: -11.05 SS G_CDS: 0.09 Total: -10.97 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.03 Total: 16.21 kcal Atomic # 16 Polarization: 1.03 SS G_CDS: -2.48 Total: -1.46 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -31.95 -10.10 -42.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753093077.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.727 kcal (2) G-P(sol) polarization free energy of solvation -31.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.045 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds