Wall clock time and date at job start Tue Mar 31 2020 18:58:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46498 * 109.46998 * 2 1 4 4 C 1.36938 * 120.00668 * 275.31007 * 3 2 1 5 5 H 1.08007 * 119.99320 * 37.57678 * 4 3 2 6 6 C 1.38801 * 120.00464 * 217.57978 * 4 3 2 7 7 N 1.31616 * 120.00024 * 21.42183 * 6 4 3 8 8 Si 1.86803 * 120.00287 * 201.42373 * 6 4 3 9 9 H 1.48491 * 109.47069 * 59.99708 * 8 6 4 10 10 H 1.48496 * 109.47135 * 180.02562 * 8 6 4 11 11 H 1.48506 * 109.46716 * 300.00142 * 8 6 4 12 12 C 1.46504 * 119.99822 * 95.30906 * 3 2 1 13 13 C 1.53001 * 109.47369 * 270.00319 * 12 3 2 14 14 N 1.46499 * 109.47031 * 180.02562 * 13 12 3 15 15 C 1.34778 * 120.00004 * 180.02562 * 14 13 12 16 16 O 1.21592 * 119.99721 * 359.97438 * 15 14 13 17 17 C 1.47590 * 120.00245 * 179.97438 * 15 14 13 18 18 C 1.40192 * 120.12299 * 359.97438 * 17 15 14 19 19 C 1.35759 * 120.61382 * 180.29606 * 18 17 15 20 20 C 1.41238 * 120.63284 * 359.45358 * 19 18 17 21 21 N 1.34414 * 129.48307 * 180.22032 * 20 19 18 22 22 C 1.28051 * 117.91729 * 180.29535 * 21 20 19 23 23 C 1.50704 * 124.24437 * 180.02562 * 22 21 20 24 24 S 1.70647 * 111.51853 * 0.02562 * 22 21 20 25 25 C 1.40153 * 118.74154 * 0.53605 * 20 19 18 26 26 C 1.38906 * 120.41206 * 359.73889 * 25 20 19 27 27 H 1.09004 * 109.46991 * 299.99722 * 1 2 3 28 28 H 1.08999 * 109.46905 * 59.99696 * 1 2 3 29 29 H 1.08998 * 109.47009 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47059 * 240.00821 * 2 1 3 31 31 H 1.08997 * 109.47359 * 120.00579 * 2 1 3 32 32 H 0.97005 * 120.00251 * 179.97438 * 7 6 4 33 33 H 1.08998 * 109.47268 * 149.99708 * 12 3 2 34 34 H 1.09006 * 109.46981 * 30.00544 * 12 3 2 35 35 H 1.08994 * 109.47440 * 59.99980 * 13 12 3 36 36 H 1.09000 * 109.46762 * 299.99568 * 13 12 3 37 37 H 0.96996 * 120.00003 * 359.97438 * 14 13 12 38 38 H 1.08005 * 119.69583 * 0.02562 * 18 17 15 39 39 H 1.07997 * 119.68130 * 179.70071 * 19 18 17 40 40 H 1.09006 * 109.46904 * 269.96293 * 23 22 21 41 41 H 1.09003 * 109.46572 * 29.95733 * 23 22 21 42 42 H 1.09000 * 109.47725 * 149.95760 * 23 22 21 43 43 H 1.08002 * 120.07577 * 179.97438 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1431 2.0635 -1.1808 5 1 1.4105 1.9279 -1.9627 6 6 3.2111 2.9290 -1.3727 7 7 4.3026 2.7982 -0.6490 8 14 3.0993 4.2797 -2.6583 9 1 1.9627 5.1786 -2.3342 10 1 4.3622 5.0609 -2.6667 11 1 2.8843 3.6727 -3.9965 12 6 2.3732 2.0327 1.2633 13 6 1.1425 2.7382 1.8367 14 7 1.4976 3.3901 3.0997 15 6 0.5650 4.0767 3.7891 16 8 -0.5709 4.1555 3.3625 17 6 0.9225 4.7331 5.0618 18 6 2.2312 4.6435 5.5562 19 6 2.5695 5.2383 6.7288 20 6 1.6126 5.9685 7.4676 21 7 1.7512 6.6244 8.6327 22 6 0.7222 7.2152 9.1142 23 6 0.7167 7.9903 10.4066 24 16 -0.6421 7.0150 8.1089 25 6 0.3043 6.0580 6.9731 26 6 -0.0384 5.4429 5.7757 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8934 -0.5137 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 5.0491 3.4029 -0.7834 33 1 3.1616 2.7641 1.0861 34 1 2.7256 1.2833 1.9721 35 1 0.3541 2.0068 2.0140 36 1 0.7903 3.4876 1.1279 37 1 2.4036 3.3269 3.4401 38 1 2.9763 4.0925 5.0014 39 1 3.5810 5.1556 7.0981 40 1 0.4632 7.3223 11.2298 41 1 1.7043 8.4188 10.5774 42 1 -0.0212 8.7904 10.3475 43 1 -1.0484 5.5150 5.3999 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753093077.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:58:37 Heat of formation + Delta-G solvation = 17.242902 kcal Electronic energy + Delta-G solvation = -25099.068473 eV Core-core repulsion = 21463.426797 eV Total energy + Delta-G solvation = -3635.641676 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.77250 -40.62435 -38.22291 -37.79682 -35.77428 -33.83042 -32.86344 -32.34570 -31.36183 -29.95478 -28.78429 -26.21494 -25.39641 -24.46592 -23.17598 -22.51421 -22.09402 -21.39846 -19.86809 -18.90862 -18.31714 -17.39562 -17.06630 -16.89792 -16.49605 -16.31857 -16.18123 -15.65648 -15.48647 -15.23132 -15.07212 -14.50682 -14.37746 -14.23579 -14.10908 -14.00794 -13.79504 -13.57466 -13.24138 -13.12048 -13.00870 -12.62063 -12.48359 -12.40776 -12.30322 -12.04573 -12.00623 -11.69044 -11.52009 -11.33648 -11.17540 -10.78546 -10.54370 -10.16587 -9.75095 -9.27116 -8.59292 -7.85978 -5.48357 -1.01711 -0.02834 0.07516 0.55905 0.81832 1.44444 1.48172 1.53970 1.84202 2.06583 2.50268 2.61856 2.77158 3.21593 3.41932 3.52582 3.80039 3.86026 3.96070 4.01897 4.22216 4.32025 4.43390 4.48031 4.57117 4.65076 4.66668 4.73918 4.82335 4.85350 4.86399 4.96628 5.06107 5.09361 5.13172 5.21057 5.29767 5.33387 5.44044 5.57106 5.66370 5.74662 6.43797 6.45294 6.50861 7.10121 7.16734 7.83071 8.35126 9.09923 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.018416 B = 0.002376 C = 0.002274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1520.044307 B =11783.961037 C =12308.666327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.136 3.864 3 N -0.597 5.597 4 C -0.271 4.271 5 H 0.051 0.949 6 C -0.028 4.028 7 N -0.909 5.909 8 Si 0.950 3.050 9 H -0.287 1.287 10 H -0.288 1.288 11 H -0.275 1.275 12 C 0.144 3.856 13 C 0.118 3.882 14 N -0.702 5.702 15 C 0.554 3.446 16 O -0.583 6.583 17 C -0.129 4.129 18 C -0.066 4.066 19 C -0.072 4.072 20 C 0.096 3.904 21 N -0.500 5.500 22 C 0.100 3.900 23 C -0.085 4.085 24 S 0.140 5.860 25 C -0.221 4.221 26 C -0.011 4.011 27 H 0.041 0.959 28 H 0.034 0.966 29 H 0.068 0.932 30 H 0.037 0.963 31 H 0.053 0.947 32 H 0.254 0.746 33 H 0.075 0.925 34 H 0.048 0.952 35 H 0.052 0.948 36 H 0.032 0.968 37 H 0.413 0.587 38 H 0.165 0.835 39 H 0.164 0.836 40 H 0.111 0.889 41 H 0.099 0.901 42 H 0.108 0.892 43 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.099 7.782 23.540 25.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.011 3.989 3 N -0.318 5.318 4 C -0.401 4.401 5 H 0.069 0.931 6 C -0.226 4.226 7 N -0.552 5.552 8 Si 0.778 3.222 9 H -0.213 1.213 10 H -0.214 1.214 11 H -0.201 1.201 12 C 0.016 3.984 13 C -0.008 4.008 14 N -0.354 5.354 15 C 0.342 3.658 16 O -0.465 6.465 17 C -0.136 4.136 18 C -0.088 4.088 19 C -0.093 4.093 20 C -0.026 4.026 21 N -0.216 5.216 22 C -0.183 4.183 23 C -0.145 4.145 24 S 0.397 5.603 25 C -0.340 4.340 26 C -0.034 4.034 27 H 0.060 0.940 28 H 0.053 0.947 29 H 0.087 0.913 30 H 0.055 0.945 31 H 0.071 0.929 32 H 0.064 0.936 33 H 0.093 0.907 34 H 0.066 0.934 35 H 0.070 0.930 36 H 0.050 0.950 37 H 0.250 0.750 38 H 0.182 0.818 39 H 0.182 0.818 40 H 0.129 0.871 41 H 0.118 0.882 42 H 0.127 0.873 43 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -6.250 8.274 23.604 25.781 hybrid contribution 0.935 0.171 -1.458 1.741 sum -5.315 8.446 22.145 24.290 Atomic orbital electron populations 1.22225 0.98045 1.00848 1.00387 1.21018 0.93120 0.85415 0.99349 1.43837 1.76375 1.09622 1.01956 1.19112 1.04381 1.21830 0.94776 0.93097 1.25735 0.94047 1.02776 1.00020 1.70065 1.03450 1.37923 1.43771 0.85636 0.76536 0.80045 0.80002 1.21320 1.21399 1.20069 1.20949 0.94255 0.96886 0.86269 1.22024 1.00267 0.95457 0.83039 1.45849 1.13849 1.52317 1.23359 1.18449 0.84655 0.78403 0.84296 1.90748 1.21937 1.62891 1.70945 1.19768 0.95723 1.02608 0.95473 1.21068 0.94680 0.97687 0.95342 1.20544 0.99646 0.95719 0.93393 1.19684 0.92603 0.98687 0.91632 1.66253 1.31437 1.12424 1.11437 1.27679 0.90747 0.97748 1.02094 1.20853 1.06151 0.99304 0.88204 1.83873 1.13405 1.49193 1.13832 1.23912 0.98693 1.08788 1.02600 1.20393 0.99859 0.92530 0.90634 0.94017 0.94713 0.91266 0.94461 0.92870 0.93642 0.90681 0.93352 0.92959 0.94956 0.74977 0.81802 0.81809 0.87120 0.88236 0.87310 0.84493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.55 10.21 71.98 0.73 -4.81 16 2 C 0.14 5.52 6.44 86.38 0.56 6.08 16 3 N -0.60 -28.63 2.43 -701.99 -1.71 -30.34 16 4 C -0.27 -14.55 9.45 84.03 0.79 -13.75 16 5 H 0.05 2.78 7.92 -2.91 -0.02 2.76 16 6 C -0.03 -1.49 4.95 84.86 0.42 -1.07 16 7 N -0.91 -50.33 11.47 21.65 0.25 -50.08 16 8 Si 0.95 44.17 29.60 68.60 2.03 46.20 16 9 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 10 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 11 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 12 C 0.14 6.24 5.45 86.38 0.47 6.71 16 13 C 0.12 4.78 6.00 86.38 0.52 5.30 16 14 N -0.70 -23.12 5.51 -466.21 -2.57 -25.69 16 15 C 0.55 19.05 7.76 86.71 0.67 19.72 16 16 O -0.58 -24.67 16.34 -4.00 -0.07 -24.74 16 17 C -0.13 -3.55 5.87 -20.11 -0.12 -3.67 16 18 C -0.07 -1.42 9.44 22.17 0.21 -1.21 16 19 C -0.07 -1.50 10.03 22.43 0.23 -1.27 16 20 C 0.10 2.28 7.00 39.95 0.28 2.56 16 21 N -0.50 -11.02 10.56 -182.20 -1.92 -12.94 16 22 C 0.10 1.64 7.29 88.66 0.65 2.29 16 23 C -0.09 -0.59 10.44 71.24 0.74 0.16 16 24 S 0.14 2.43 23.11 -56.49 -1.31 1.12 16 25 C -0.22 -5.32 6.54 22.90 0.15 -5.17 16 26 C -0.01 -0.30 9.62 22.65 0.22 -0.08 16 27 H 0.04 1.50 6.64 -2.38 -0.02 1.48 16 28 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 30 H 0.04 1.56 8.08 -2.39 -0.02 1.54 16 31 H 0.05 1.94 7.83 -2.39 -0.02 1.93 16 32 H 0.25 13.63 8.31 -92.70 -0.77 12.86 16 33 H 0.08 3.69 5.52 -2.39 -0.01 3.67 16 34 H 0.05 1.89 7.86 -2.38 -0.02 1.87 16 35 H 0.05 2.14 6.64 -2.39 -0.02 2.12 16 36 H 0.03 1.52 8.14 -2.39 -0.02 1.50 16 37 H 0.41 10.90 6.49 -92.71 -0.60 10.30 16 38 H 0.16 2.65 6.38 -2.91 -0.02 2.63 16 39 H 0.16 2.56 8.06 -2.91 -0.02 2.53 16 40 H 0.11 0.43 8.14 -2.38 -0.02 0.41 16 41 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 42 H 0.11 0.28 8.14 -2.39 -0.02 0.26 16 43 H 0.14 3.77 7.64 -2.91 -0.02 3.75 16 Total: -1.00 -69.88 373.05 1.67 -68.21 By element: Atomic # 1 Polarization: 16.05 SS G_CDS: 0.44 Total: 16.49 kcal Atomic # 6 Polarization: 5.25 SS G_CDS: 6.52 Total: 11.78 kcal Atomic # 7 Polarization: -113.11 SS G_CDS: -5.95 Total: -119.06 kcal Atomic # 8 Polarization: -24.67 SS G_CDS: -0.07 Total: -24.74 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.20 kcal Atomic # 16 Polarization: 2.43 SS G_CDS: -1.31 Total: 1.12 kcal Total: -69.88 1.67 -68.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753093077.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.454 kcal (2) G-P(sol) polarization free energy of solvation -69.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.212 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds