Wall clock time and date at job start Tue Mar 31 2020 18:58:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46500 * 109.47134 * 2 1 4 4 C 1.46507 * 120.00038 * 270.00083 * 3 2 1 5 5 C 1.53002 * 109.46629 * 269.99841 * 4 3 2 6 6 N 1.46507 * 109.46629 * 179.97438 * 5 4 3 7 7 C 1.36940 * 119.99800 * 180.02562 * 6 5 4 8 8 H 1.07998 * 119.99846 * 359.97438 * 7 6 5 9 9 C 1.38805 * 119.99789 * 180.02562 * 7 6 5 10 10 N 1.31625 * 120.00229 * 180.02562 * 9 7 6 11 11 Si 1.86805 * 120.00053 * 359.97438 * 9 7 6 12 12 H 1.48502 * 109.46899 * 90.00310 * 11 9 7 13 13 H 1.48506 * 109.47066 * 210.00074 * 11 9 7 14 14 H 1.48494 * 109.47363 * 330.00100 * 11 9 7 15 15 C 1.34777 * 120.00201 * 89.99976 * 3 2 1 16 16 O 1.21275 * 120.00597 * 180.02562 * 15 3 2 17 17 C 1.50701 * 119.99650 * 0.02562 * 15 3 2 18 18 C 1.50703 * 109.47030 * 180.02562 * 17 15 3 19 19 N 1.28731 * 121.08323 * 270.01759 * 18 17 15 20 20 S 1.69389 * 108.98185 * 179.52935 * 19 18 17 21 21 C 1.76510 * 96.12066 * 0.42012 * 20 19 18 22 22 C 1.38785 * 133.54908 * 179.45717 * 21 20 19 23 23 C 1.36722 * 119.75495 * 180.02562 * 22 21 20 24 24 C 1.38977 * 120.14803 * 359.97438 * 23 22 21 25 25 C 1.36045 * 121.16050 * 0.02562 * 24 23 22 26 26 C 1.40803 * 105.51982 * 359.72413 * 21 20 19 27 27 H 1.08999 * 109.47164 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47186 * 300.00009 * 1 2 3 29 29 H 1.09006 * 109.46855 * 59.99958 * 1 2 3 30 30 H 1.09002 * 109.47186 * 239.99991 * 2 1 3 31 31 H 1.08998 * 109.47144 * 119.99876 * 2 1 3 32 32 H 1.08995 * 109.46825 * 29.99734 * 4 3 2 33 33 H 1.08997 * 109.47053 * 150.00056 * 4 3 2 34 34 H 1.08995 * 109.47430 * 299.99522 * 5 4 3 35 35 H 1.08997 * 109.47228 * 60.00322 * 5 4 3 36 36 H 0.97000 * 119.99995 * 359.97438 * 6 5 4 37 37 H 0.96992 * 119.99999 * 179.97438 * 10 9 7 38 38 H 1.08994 * 109.47590 * 59.99802 * 17 15 3 39 39 H 1.09003 * 109.46969 * 299.99619 * 17 15 3 40 40 H 1.07996 * 120.12596 * 0.06546 * 22 21 20 41 41 H 1.07997 * 119.92460 * 179.97438 * 23 22 21 42 42 H 1.07994 * 119.41610 * 180.02562 * 24 23 22 43 43 H 1.08002 * 119.88976 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0719 -1.2688 5 6 3.7076 1.8314 -1.7104 6 7 3.9515 2.5216 -2.9794 7 6 5.1836 2.4485 -3.5727 8 1 5.9755 1.8825 -3.1048 9 6 5.4149 3.1028 -4.7748 10 7 6.5990 3.0322 -5.3454 11 14 4.0454 4.0824 -5.5837 12 1 4.0868 5.4852 -5.0980 13 1 4.2269 4.0633 -7.0574 14 1 2.7338 3.4776 -5.2386 15 6 2.2430 2.0166 1.1672 16 8 2.6468 3.1601 1.1673 17 6 1.9924 1.3060 2.4723 18 6 2.3181 2.2295 3.6177 19 7 3.5015 2.2704 4.1227 20 16 3.5279 3.4128 5.3731 21 6 1.8308 3.8788 5.2380 22 6 1.0285 4.7783 5.9261 23 6 -0.2862 4.9188 5.5782 24 6 -0.8177 4.1643 4.5391 25 6 -0.0510 3.2764 3.8501 26 6 1.3090 3.1011 4.1866 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.5817 1.6877 -2.0284 33 1 2.0956 3.1411 -1.1384 34 1 4.3883 2.2156 -0.9508 35 1 3.8745 0.7622 -1.8407 36 1 3.2402 3.0296 -3.3998 37 1 6.7605 3.4891 -6.1855 38 1 2.6228 0.4187 2.5299 39 1 0.9445 1.0115 2.5302 40 1 1.4413 5.3655 6.7330 41 1 -0.9131 5.6176 6.1121 42 1 -1.8576 4.2851 4.2739 43 1 -0.4854 2.7004 3.0464 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754084616.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:58:29 Heat of formation + Delta-G solvation = 34.734416 kcal Electronic energy + Delta-G solvation = -25598.767057 eV Core-core repulsion = 21963.883869 eV Total energy + Delta-G solvation = -3634.883187 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.62292 -39.65154 -37.13324 -36.19704 -34.80527 -32.09593 -31.61938 -30.80926 -30.58667 -30.43367 -27.76051 -24.22552 -23.72079 -23.44175 -23.01901 -21.52266 -20.64411 -18.96558 -18.81660 -17.63875 -17.25125 -16.73028 -16.37000 -15.78348 -15.48508 -15.15019 -14.69640 -14.44061 -14.31025 -14.07148 -13.93234 -13.77639 -13.59997 -13.50222 -13.01104 -12.62045 -12.56983 -12.38106 -12.22075 -12.06665 -11.94288 -11.54747 -11.36451 -11.14070 -11.07267 -11.02971 -10.75480 -10.69905 -10.18713 -10.15873 -9.81071 -9.57796 -9.28255 -8.87627 -8.65878 -8.12995 -7.22413 -5.74110 -3.10404 0.21251 0.83071 1.17796 1.55359 1.80224 2.58197 2.94156 3.28349 3.38657 3.42898 3.47207 3.93431 4.14085 4.37144 4.51273 4.61421 4.61812 4.70255 4.77080 4.88085 4.93080 4.98406 5.10701 5.18105 5.23176 5.40304 5.44899 5.48192 5.51862 5.58996 5.63832 5.69060 5.75610 5.82483 5.92050 5.96540 6.00663 6.29853 6.41917 6.42440 6.63674 6.82078 7.35196 8.00930 8.14797 8.44185 9.22618 9.94656 10.13865 11.44306 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.014414 B = 0.002742 C = 0.002630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1942.039903 B =10208.375336 C =10645.023849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.099 3.901 3 N -0.605 5.605 4 C 0.106 3.894 5 C 0.146 3.854 6 N -0.753 5.753 7 C -0.242 4.242 8 H 0.090 0.910 9 C 0.004 3.996 10 N -0.934 5.934 11 Si 0.886 3.114 12 H -0.283 1.283 13 H -0.290 1.290 14 H -0.277 1.277 15 C 0.519 3.481 16 O -0.521 6.521 17 C -0.078 4.078 18 C 0.178 3.822 19 N -0.426 5.426 20 S 0.192 5.808 21 C -0.135 4.135 22 C -0.081 4.081 23 C -0.084 4.084 24 C -0.124 4.124 25 C -0.048 4.048 26 C -0.120 4.120 27 H 0.069 0.931 28 H 0.055 0.945 29 H 0.062 0.938 30 H 0.088 0.912 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.084 0.916 34 H 0.031 0.969 35 H 0.027 0.973 36 H 0.361 0.639 37 H 0.260 0.740 38 H 0.119 0.881 39 H 0.116 0.884 40 H 0.133 0.867 41 H 0.135 0.865 42 H 0.132 0.868 43 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.748 -4.112 24.726 32.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.025 4.025 3 N -0.339 5.339 4 C -0.017 4.017 5 C 0.018 3.982 6 N -0.400 5.400 7 C -0.372 4.372 8 H 0.107 0.893 9 C -0.192 4.192 10 N -0.582 5.582 11 Si 0.716 3.284 12 H -0.210 1.210 13 H -0.217 1.217 14 H -0.204 1.204 15 C 0.304 3.696 16 O -0.395 6.395 17 C -0.123 4.123 18 C -0.012 4.012 19 N -0.236 5.236 20 S 0.348 5.652 21 C -0.255 4.255 22 C -0.104 4.104 23 C -0.106 4.106 24 C -0.145 4.145 25 C -0.070 4.070 26 C -0.131 4.131 27 H 0.087 0.913 28 H 0.074 0.926 29 H 0.081 0.919 30 H 0.106 0.894 31 H 0.097 0.903 32 H 0.096 0.904 33 H 0.102 0.898 34 H 0.049 0.951 35 H 0.044 0.956 36 H 0.193 0.807 37 H 0.070 0.930 38 H 0.137 0.863 39 H 0.134 0.866 40 H 0.151 0.849 41 H 0.153 0.847 42 H 0.150 0.850 43 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -17.948 -3.759 25.363 31.298 hybrid contribution -2.434 0.727 -1.382 2.892 sum -20.383 -3.033 23.981 31.619 Atomic orbital electron populations 1.22234 0.95795 1.02416 1.02575 1.21669 0.94383 0.82426 1.03981 1.47861 1.65828 1.14328 1.05899 1.21724 0.98161 0.98402 0.83382 1.20893 0.92810 0.95874 0.88627 1.42555 1.12396 1.61913 1.23093 1.19034 0.88274 1.27086 1.02837 0.89251 1.24674 0.96486 1.00391 0.97632 1.69705 1.20964 1.47897 1.19670 0.86519 0.82189 0.80728 0.78914 1.20992 1.21687 1.20355 1.20104 0.78067 0.86776 0.84643 1.90785 1.44133 1.17659 1.86963 1.20566 1.04922 0.97968 0.88862 1.21809 0.88193 0.95453 0.95773 1.75715 1.21171 1.17070 1.09693 1.84856 1.05550 1.37815 1.36995 1.23523 0.99831 1.01634 1.00538 1.19996 0.93309 0.97305 0.99771 1.21053 0.94677 0.98320 0.96588 1.20759 1.00486 0.96762 0.96452 1.20654 0.90678 0.97406 0.98290 1.20090 0.95981 0.99186 0.97887 0.91256 0.92635 0.91931 0.89397 0.90268 0.90433 0.89790 0.95086 0.95552 0.80691 0.93041 0.86260 0.86608 0.84877 0.84730 0.84991 0.85227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.10 10.24 37.16 0.38 -0.72 16 2 C 0.10 0.83 5.93 -4.04 -0.02 0.81 16 3 N -0.61 -7.72 2.47 -173.68 -0.43 -8.15 16 4 C 0.11 1.69 5.52 -4.04 -0.02 1.67 16 5 C 0.15 3.01 6.58 -4.04 -0.03 2.98 16 6 N -0.75 -18.77 5.41 -59.91 -0.32 -19.10 16 7 C -0.24 -7.17 10.47 -15.06 -0.16 -7.33 16 8 H 0.09 2.84 8.06 -52.49 -0.42 2.42 16 9 C 0.00 0.12 5.50 -17.43 -0.10 0.02 16 10 N -0.93 -30.15 13.97 55.49 0.78 -29.38 16 11 Si 0.89 22.63 27.74 -169.99 -4.71 17.91 16 12 H -0.28 -7.25 7.11 56.52 0.40 -6.85 16 13 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 14 H -0.28 -6.55 6.52 56.52 0.37 -6.18 16 15 C 0.52 7.36 7.67 -10.98 -0.08 7.27 16 16 O -0.52 -10.00 15.61 5.56 0.09 -9.91 16 17 C -0.08 -0.80 4.53 -29.03 -0.13 -0.93 16 18 C 0.18 2.29 5.37 -81.23 -0.44 1.85 16 19 N -0.43 -6.26 11.84 34.00 0.40 -5.86 16 20 S 0.19 2.43 23.86 -107.50 -2.56 -0.14 16 21 C -0.13 -1.54 6.71 -38.41 -0.26 -1.80 16 22 C -0.08 -0.70 10.02 -39.93 -0.40 -1.10 16 23 C -0.08 -0.58 10.01 -39.86 -0.40 -0.98 16 24 C -0.12 -0.89 9.92 -40.10 -0.40 -1.29 16 25 C -0.05 -0.43 9.72 -39.25 -0.38 -0.81 16 26 C -0.12 -1.39 6.04 -105.14 -0.64 -2.03 16 27 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.05 0.31 7.22 -51.93 -0.38 -0.07 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.09 0.77 8.07 -51.93 -0.42 0.35 16 31 H 0.08 0.50 6.44 -51.93 -0.33 0.17 16 32 H 0.08 1.09 8.07 -51.93 -0.42 0.67 16 33 H 0.08 1.48 7.42 -51.93 -0.39 1.10 16 34 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.36 8.62 5.53 -40.82 -0.23 8.40 16 37 H 0.26 7.93 8.31 -40.82 -0.34 7.60 16 38 H 0.12 1.03 7.40 -51.93 -0.38 0.65 16 39 H 0.12 0.74 6.58 -51.93 -0.34 0.39 16 40 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 41 H 0.13 0.53 8.06 -52.49 -0.42 0.11 16 42 H 0.13 0.59 8.06 -52.49 -0.42 0.16 16 43 H 0.13 0.86 7.64 -52.49 -0.40 0.46 16 LS Contribution 373.36 15.07 5.63 5.63 Total: -1.00 -38.24 373.36 -10.05 -48.29 By element: Atomic # 1 Polarization: 8.94 SS G_CDS: -5.84 Total: 3.10 kcal Atomic # 6 Polarization: 0.68 SS G_CDS: -3.07 Total: -2.39 kcal Atomic # 7 Polarization: -62.91 SS G_CDS: 0.42 Total: -62.49 kcal Atomic # 8 Polarization: -10.00 SS G_CDS: 0.09 Total: -9.91 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -4.71 Total: 17.91 kcal Atomic # 16 Polarization: 2.43 SS G_CDS: -2.56 Total: -0.14 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -38.24 -10.05 -48.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754084616.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.020 kcal (2) G-P(sol) polarization free energy of solvation -38.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.286 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds