Wall clock time and date at job start Tue Mar 31 2020 18:58:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46500 * 109.47134 * 2 1 4 4 C 1.46507 * 120.00038 * 270.00083 * 3 2 1 5 5 C 1.53002 * 109.46629 * 269.99841 * 4 3 2 6 6 N 1.46507 * 109.46629 * 179.97438 * 5 4 3 7 7 C 1.36940 * 119.99800 * 180.02562 * 6 5 4 8 8 H 1.07998 * 119.99846 * 359.97438 * 7 6 5 9 9 C 1.38805 * 119.99789 * 180.02562 * 7 6 5 10 10 N 1.31625 * 120.00229 * 180.02562 * 9 7 6 11 11 Si 1.86805 * 120.00053 * 359.97438 * 9 7 6 12 12 H 1.48502 * 109.46899 * 90.00310 * 11 9 7 13 13 H 1.48506 * 109.47066 * 210.00074 * 11 9 7 14 14 H 1.48494 * 109.47363 * 330.00100 * 11 9 7 15 15 C 1.34777 * 120.00201 * 89.99976 * 3 2 1 16 16 O 1.21275 * 120.00597 * 180.02562 * 15 3 2 17 17 C 1.50701 * 119.99650 * 0.02562 * 15 3 2 18 18 C 1.50703 * 109.47030 * 180.02562 * 17 15 3 19 19 N 1.28731 * 121.08323 * 270.01759 * 18 17 15 20 20 S 1.69389 * 108.98185 * 179.52935 * 19 18 17 21 21 C 1.76510 * 96.12066 * 0.42012 * 20 19 18 22 22 C 1.38785 * 133.54908 * 179.45717 * 21 20 19 23 23 C 1.36722 * 119.75495 * 180.02562 * 22 21 20 24 24 C 1.38977 * 120.14803 * 359.97438 * 23 22 21 25 25 C 1.36045 * 121.16050 * 0.02562 * 24 23 22 26 26 C 1.40803 * 105.51982 * 359.72413 * 21 20 19 27 27 H 1.08999 * 109.47164 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47186 * 300.00009 * 1 2 3 29 29 H 1.09006 * 109.46855 * 59.99958 * 1 2 3 30 30 H 1.09002 * 109.47186 * 239.99991 * 2 1 3 31 31 H 1.08998 * 109.47144 * 119.99876 * 2 1 3 32 32 H 1.08995 * 109.46825 * 29.99734 * 4 3 2 33 33 H 1.08997 * 109.47053 * 150.00056 * 4 3 2 34 34 H 1.08995 * 109.47430 * 299.99522 * 5 4 3 35 35 H 1.08997 * 109.47228 * 60.00322 * 5 4 3 36 36 H 0.97000 * 119.99995 * 359.97438 * 6 5 4 37 37 H 0.96992 * 119.99999 * 179.97438 * 10 9 7 38 38 H 1.08994 * 109.47590 * 59.99802 * 17 15 3 39 39 H 1.09003 * 109.46969 * 299.99619 * 17 15 3 40 40 H 1.07996 * 120.12596 * 0.06546 * 22 21 20 41 41 H 1.07997 * 119.92460 * 179.97438 * 23 22 21 42 42 H 1.07994 * 119.41610 * 180.02562 * 24 23 22 43 43 H 1.08002 * 119.88976 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0719 -1.2688 5 6 3.7076 1.8314 -1.7104 6 7 3.9515 2.5216 -2.9794 7 6 5.1836 2.4485 -3.5727 8 1 5.9755 1.8825 -3.1048 9 6 5.4149 3.1028 -4.7748 10 7 6.5990 3.0322 -5.3454 11 14 4.0454 4.0824 -5.5837 12 1 4.0868 5.4852 -5.0980 13 1 4.2269 4.0633 -7.0574 14 1 2.7338 3.4776 -5.2386 15 6 2.2430 2.0166 1.1672 16 8 2.6468 3.1601 1.1673 17 6 1.9924 1.3060 2.4723 18 6 2.3181 2.2295 3.6177 19 7 3.5015 2.2704 4.1227 20 16 3.5279 3.4128 5.3731 21 6 1.8308 3.8788 5.2380 22 6 1.0285 4.7783 5.9261 23 6 -0.2862 4.9188 5.5782 24 6 -0.8177 4.1643 4.5391 25 6 -0.0510 3.2764 3.8501 26 6 1.3090 3.1011 4.1866 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.5817 1.6877 -2.0284 33 1 2.0956 3.1411 -1.1384 34 1 4.3883 2.2156 -0.9508 35 1 3.8745 0.7622 -1.8407 36 1 3.2402 3.0296 -3.3998 37 1 6.7605 3.4891 -6.1855 38 1 2.6228 0.4187 2.5299 39 1 0.9445 1.0115 2.5302 40 1 1.4413 5.3655 6.7330 41 1 -0.9131 5.6176 6.1121 42 1 -1.8576 4.2851 4.2739 43 1 -0.4854 2.7004 3.0464 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754084616.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:58:28 Heat of formation + Delta-G solvation = 8.603477 kcal Electronic energy + Delta-G solvation = -25599.900179 eV Core-core repulsion = 21963.883869 eV Total energy + Delta-G solvation = -3636.016310 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.54392 -40.53354 -38.02147 -37.40768 -36.51220 -33.90163 -32.50165 -31.85423 -31.50155 -31.24073 -29.23170 -25.69256 -24.63485 -24.21861 -23.84190 -23.26610 -21.61429 -20.15612 -19.58783 -19.51112 -18.29575 -17.55040 -17.39652 -16.75513 -16.43225 -16.21127 -16.00166 -15.68704 -15.63125 -15.22715 -14.93486 -14.83291 -14.73296 -14.61505 -14.30889 -13.82954 -13.46881 -13.34151 -13.10961 -13.02151 -12.98355 -12.79966 -12.62100 -12.61080 -12.32526 -12.11568 -11.94316 -11.85798 -11.76578 -11.61234 -11.09410 -11.04368 -10.78505 -9.98475 -9.77508 -9.40425 -8.97672 -8.08289 -5.44667 -0.53859 0.18718 0.35181 0.68979 0.99273 1.34374 1.40892 1.47301 1.51452 1.95236 2.44844 2.63901 3.15061 3.22525 3.39354 3.51574 3.70128 3.88087 4.01627 4.07155 4.11881 4.13775 4.16825 4.27727 4.36012 4.44429 4.46085 4.52081 4.60995 4.66352 4.90320 4.91601 4.97676 5.03228 5.07117 5.08863 5.25235 5.41108 5.46764 5.51478 5.52389 5.67701 5.83273 6.14531 6.33981 6.99810 7.08622 7.72844 7.94992 9.13229 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.014414 B = 0.002742 C = 0.002630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1942.039903 B =10208.375336 C =10645.023849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.089 3.911 3 N -0.600 5.600 4 C 0.120 3.880 5 C 0.149 3.851 6 N -0.754 5.754 7 C -0.244 4.244 8 H 0.049 0.951 9 C -0.064 4.064 10 N -0.983 5.983 11 Si 0.962 3.038 12 H -0.282 1.282 13 H -0.289 1.289 14 H -0.242 1.242 15 C 0.516 3.484 16 O -0.580 6.580 17 C -0.071 4.071 18 C 0.175 3.825 19 N -0.471 5.471 20 S 0.151 5.849 21 C -0.149 4.149 22 C -0.095 4.095 23 C -0.072 4.072 24 C -0.120 4.120 25 C -0.055 4.055 26 C -0.147 4.147 27 H 0.091 0.909 28 H 0.068 0.932 29 H 0.051 0.949 30 H 0.086 0.914 31 H 0.104 0.896 32 H 0.107 0.893 33 H 0.066 0.934 34 H -0.004 1.004 35 H 0.034 0.966 36 H 0.369 0.631 37 H 0.261 0.739 38 H 0.135 0.865 39 H 0.162 0.838 40 H 0.150 0.850 41 H 0.172 0.828 42 H 0.168 0.832 43 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.934 -4.364 25.168 36.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.032 4.032 3 N -0.332 5.332 4 C -0.004 4.004 5 C 0.021 3.979 6 N -0.400 5.400 7 C -0.375 4.375 8 H 0.067 0.933 9 C -0.255 4.255 10 N -0.633 5.633 11 Si 0.788 3.212 12 H -0.208 1.208 13 H -0.215 1.215 14 H -0.166 1.166 15 C 0.303 3.697 16 O -0.460 6.460 17 C -0.115 4.115 18 C -0.015 4.015 19 N -0.283 5.283 20 S 0.307 5.693 21 C -0.269 4.269 22 C -0.118 4.118 23 C -0.094 4.094 24 C -0.140 4.140 25 C -0.077 4.077 26 C -0.158 4.158 27 H 0.110 0.890 28 H 0.087 0.913 29 H 0.070 0.930 30 H 0.104 0.896 31 H 0.122 0.878 32 H 0.125 0.875 33 H 0.084 0.916 34 H 0.014 0.986 35 H 0.052 0.948 36 H 0.203 0.797 37 H 0.069 0.931 38 H 0.153 0.847 39 H 0.180 0.820 40 H 0.168 0.832 41 H 0.189 0.811 42 H 0.185 0.815 43 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -23.186 -4.080 25.841 34.957 hybrid contribution -0.836 0.785 -1.444 1.844 sum -24.023 -3.295 24.397 34.397 Atomic orbital electron populations 1.22197 0.93549 1.03930 1.02751 1.22056 0.96196 0.79756 1.05237 1.47956 1.65089 1.15822 1.04348 1.21390 0.95148 0.98167 0.85652 1.20965 0.95550 0.95373 0.85973 1.42487 1.10941 1.62403 1.24213 1.18969 0.89255 1.26274 1.02975 0.93308 1.25619 0.99545 1.01947 0.98393 1.69900 1.23740 1.49360 1.20317 0.85317 0.79976 0.78628 0.77319 1.20825 1.21519 1.16571 1.20764 0.76724 0.86181 0.86006 1.90763 1.46864 1.20484 1.87855 1.20702 1.07984 0.97230 0.85539 1.22340 0.88028 0.95426 0.95717 1.75697 1.22708 1.18712 1.11133 1.84703 1.08227 1.38818 1.37601 1.23731 0.98584 1.02984 1.01621 1.20387 0.94077 0.97074 1.00244 1.21563 0.94005 0.97842 0.95992 1.21264 1.01952 0.95299 0.95475 1.21044 0.89477 0.98105 0.99071 1.20343 0.97210 0.99756 0.98506 0.89028 0.91308 0.92957 0.89586 0.87763 0.87532 0.91567 0.98598 0.94794 0.79718 0.93070 0.84671 0.82049 0.83227 0.81082 0.81450 0.82880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.40 10.24 71.98 0.74 -0.66 16 2 C 0.09 1.20 5.93 86.38 0.51 1.71 16 3 N -0.60 -14.26 2.47 -821.80 -2.03 -16.29 16 4 C 0.12 3.69 5.52 86.38 0.48 4.16 16 5 C 0.15 6.20 6.58 86.38 0.57 6.77 16 6 N -0.75 -37.57 5.41 -343.45 -1.86 -39.43 16 7 C -0.24 -14.83 10.47 84.03 0.88 -13.95 16 8 H 0.05 3.28 8.06 -2.91 -0.02 3.26 16 9 C -0.06 -3.90 5.50 84.86 0.47 -3.43 16 10 N -0.98 -65.22 13.97 21.65 0.30 -64.92 16 11 Si 0.96 46.46 27.74 68.60 1.90 48.36 16 12 H -0.28 -13.53 7.11 99.48 0.71 -12.83 16 13 H -0.29 -13.84 7.11 99.48 0.71 -13.14 16 14 H -0.24 -10.18 6.52 99.48 0.65 -9.53 16 15 C 0.52 14.21 7.67 87.66 0.67 14.88 16 16 O -0.58 -22.89 15.61 -3.01 -0.05 -22.93 16 17 C -0.07 -1.31 4.53 29.10 0.13 -1.18 16 18 C 0.17 4.49 5.37 44.74 0.24 4.73 16 19 N -0.47 -14.66 11.84 -46.34 -0.55 -15.21 16 20 S 0.15 4.13 23.86 -56.49 -1.35 2.78 16 21 C -0.15 -3.43 6.71 23.03 0.15 -3.27 16 22 C -0.09 -1.49 10.02 22.05 0.22 -1.27 16 23 C -0.07 -0.73 10.01 22.09 0.22 -0.51 16 24 C -0.12 -1.22 9.92 21.94 0.22 -1.01 16 25 C -0.05 -0.81 9.72 22.49 0.22 -0.59 16 26 C -0.15 -3.30 6.04 -20.20 -0.12 -3.42 16 27 H 0.09 0.42 8.14 -2.39 -0.02 0.40 16 28 H 0.07 0.41 7.22 -2.39 -0.02 0.40 16 29 H 0.05 0.58 8.14 -2.38 -0.02 0.56 16 30 H 0.09 1.24 8.07 -2.39 -0.02 1.22 16 31 H 0.10 0.92 6.44 -2.39 -0.02 0.90 16 32 H 0.11 2.67 8.07 -2.39 -0.02 2.65 16 33 H 0.07 2.30 7.42 -2.39 -0.02 2.29 16 34 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 35 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 36 H 0.37 17.02 5.53 -92.71 -0.51 16.51 16 37 H 0.26 16.29 8.31 -92.71 -0.77 15.52 16 38 H 0.14 2.07 7.40 -2.39 -0.02 2.06 16 39 H 0.16 1.40 6.58 -2.39 -0.02 1.38 16 40 H 0.15 1.70 8.06 -2.91 -0.02 1.68 16 41 H 0.17 0.48 8.06 -2.91 -0.02 0.46 16 42 H 0.17 0.53 8.06 -2.91 -0.02 0.50 16 43 H 0.15 1.40 7.64 -2.91 -0.02 1.37 16 Total: -1.00 -90.30 373.36 2.43 -87.87 By element: Atomic # 1 Polarization: 16.34 SS G_CDS: 0.46 Total: 16.80 kcal Atomic # 6 Polarization: -2.63 SS G_CDS: 5.60 Total: 2.97 kcal Atomic # 7 Polarization: -131.71 SS G_CDS: -4.14 Total: -135.84 kcal Atomic # 8 Polarization: -22.89 SS G_CDS: -0.05 Total: -22.93 kcal Atomic # 14 Polarization: 46.46 SS G_CDS: 1.90 Total: 48.36 kcal Atomic # 16 Polarization: 4.13 SS G_CDS: -1.35 Total: 2.78 kcal Total: -90.30 2.43 -87.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754084616.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.472 kcal (2) G-P(sol) polarization free energy of solvation -90.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.868 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds