Wall clock time and date at job start Tue Mar 31 2020 18:39:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 N 1.46500 * 109.47249 * 120.00351 * 2 1 3 5 5 C 1.36939 * 119.99555 * 274.99680 * 4 2 1 6 6 H 1.07999 * 120.00498 * 0.02562 * 5 4 2 7 7 C 1.38813 * 119.99885 * 179.97438 * 5 4 2 8 8 N 1.31623 * 120.00026 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00060 * 179.97438 * 7 5 4 10 10 H 1.48507 * 109.46870 * 60.00342 * 9 7 5 11 11 H 1.48498 * 109.46892 * 179.97438 * 9 7 5 12 12 H 1.48494 * 109.47084 * 300.00260 * 9 7 5 13 13 C 1.52999 * 109.46623 * 239.99904 * 2 1 3 14 14 H 1.09000 * 109.47486 * 299.99829 * 13 2 1 15 15 C 1.53006 * 109.46997 * 179.97438 * 13 2 1 16 16 N 1.46505 * 109.47266 * 60.00137 * 13 2 1 17 17 C 1.34771 * 120.00080 * 204.99535 * 16 13 2 18 18 O 1.21761 * 119.99822 * 0.02562 * 17 16 13 19 19 C 1.46111 * 120.00113 * 179.97438 * 17 16 13 20 20 S 1.75813 * 125.47580 * 0.02575 * 19 17 16 21 21 C 1.70570 * 91.67367 * 180.02562 * 20 19 17 22 22 C 1.33575 * 111.17788 * 0.02562 * 21 20 19 23 23 C 1.37353 * 125.47735 * 179.71937 * 19 17 16 24 24 N 1.39881 * 123.48892 * 0.02562 * 23 19 17 25 25 C 1.36598 * 125.67031 * 309.68952 * 24 23 19 26 26 C 1.34841 * 108.19692 * 179.89073 * 25 24 23 27 27 C 1.40963 * 107.47471 * 0.36978 * 26 25 24 28 28 C 1.34843 * 107.47238 * 359.76829 * 27 26 25 29 29 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 30 30 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 31 31 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 32 32 H 0.96998 * 120.00364 * 94.99433 * 4 2 1 33 33 H 0.96993 * 120.00204 * 179.97438 * 8 7 5 34 34 H 1.09001 * 109.47377 * 180.02562 * 15 13 2 35 35 H 1.09000 * 109.46866 * 300.00212 * 15 13 2 36 36 H 1.08996 * 109.47261 * 59.99820 * 15 13 2 37 37 H 0.97003 * 119.99519 * 24.99891 * 16 13 2 38 38 H 1.08006 * 124.40872 * 180.02562 * 21 20 19 39 39 H 1.07997 * 122.46248 * 179.97438 * 22 21 20 40 40 H 1.08003 * 125.90112 * 0.04105 * 25 24 23 41 41 H 1.07997 * 126.26250 * 180.15543 * 26 25 24 42 42 H 1.07996 * 126.26738 * 179.75322 * 27 26 25 43 43 H 1.08003 * 125.90274 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.1493 -0.0075 2.3757 6 1 1.8920 1.0403 2.4244 7 6 2.6115 -0.6620 3.5092 8 7 2.9245 -1.9391 3.4501 9 14 2.7906 0.2701 5.1181 10 1 1.4686 0.8079 5.5285 11 1 3.2983 -0.6487 6.1685 12 1 3.7467 1.3917 4.9366 13 6 2.0399 -0.7213 -1.2493 14 1 1.6766 -1.7490 -1.2493 15 6 3.5700 -0.7208 -1.2497 16 7 1.5516 -0.0307 -2.4455 17 6 1.4228 -0.7030 -3.6064 18 8 1.7120 -1.8845 -3.6609 19 6 0.9353 -0.0144 -4.7992 20 16 0.4774 1.6810 -4.8832 21 6 0.0815 1.5439 -6.5366 22 6 0.2850 0.3005 -6.9800 23 6 0.7665 -0.5860 -6.0367 24 7 1.0471 -1.9285 -6.3115 25 6 2.2070 -2.5796 -6.0007 26 6 2.0992 -3.8561 -6.4217 27 6 0.8316 -3.9983 -7.0215 28 6 0.2091 -2.8049 -6.9405 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 2.2491 -1.6318 1.1526 33 1 3.2478 -2.3964 4.2420 34 1 3.9333 -1.2342 -2.1399 35 1 3.9329 0.3070 -1.2499 36 1 3.9338 -1.2343 -0.3597 37 1 1.3209 0.9105 -2.4018 38 1 -0.2859 2.3567 -7.1456 39 1 0.0923 0.0109 -8.0024 40 1 3.0618 -2.1474 -5.5016 41 1 2.8485 -4.6273 -6.3211 42 1 0.4320 -4.8983 -7.4650 43 1 -0.7808 -2.5805 -7.3097 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755247052.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:39:18 Heat of formation + Delta-G solvation = 71.324430 kcal Electronic energy + Delta-G solvation = -26014.928013 eV Core-core repulsion = 22381.631488 eV Total energy + Delta-G solvation = -3633.296525 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.56008 -39.67516 -37.93567 -36.65707 -34.00584 -32.08851 -31.87801 -30.22334 -28.99979 -28.56288 -28.32490 -25.11907 -24.02550 -23.08267 -21.53077 -21.13963 -20.34350 -20.17528 -19.09581 -18.67813 -17.56935 -17.10683 -16.15455 -15.47317 -15.16835 -14.94023 -14.67792 -14.41555 -14.04342 -13.71628 -13.68018 -13.46133 -13.37832 -13.12091 -12.90358 -12.65309 -12.44646 -12.26178 -12.03574 -11.84756 -11.71601 -11.50700 -11.22249 -10.99008 -10.84832 -10.72154 -10.27304 -10.02794 -9.92693 -9.69956 -9.59861 -9.25438 -9.04852 -8.82175 -8.30155 -8.01476 -7.02389 -5.79887 -3.10000 -0.00328 0.94459 1.35265 1.68888 2.52989 2.94514 3.08516 3.13043 3.17876 3.41470 3.46269 3.47359 4.43649 4.56538 4.66744 4.75158 5.01140 5.19735 5.27784 5.35229 5.44281 5.45897 5.57709 5.62698 5.69499 5.71167 5.76399 5.85270 6.06419 6.13723 6.33275 6.34015 6.35897 6.37827 6.46661 6.56295 6.76856 6.88230 6.98388 7.02925 7.24189 7.46501 7.51994 7.65167 8.19254 8.37456 9.48841 10.03487 10.38715 11.42323 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.017715 B = 0.002873 C = 0.002576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1580.204054 B = 9744.939184 C =10868.994397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.169 3.831 3 H 0.050 0.950 4 N -0.717 5.717 5 C -0.241 4.241 6 H 0.070 0.930 7 C -0.010 4.010 8 N -0.930 5.930 9 Si 0.907 3.093 10 H -0.286 1.286 11 H -0.291 1.291 12 H -0.286 1.286 13 C 0.137 3.863 14 H 0.088 0.912 15 C -0.152 4.152 16 N -0.710 5.710 17 C 0.581 3.419 18 O -0.511 6.511 19 C -0.274 4.274 20 S 0.249 5.751 21 C -0.222 4.222 22 C -0.149 4.149 23 C 0.181 3.819 24 N -0.390 5.390 25 C 0.053 3.947 26 C -0.210 4.210 27 C -0.186 4.186 28 C -0.024 4.024 29 H 0.056 0.944 30 H 0.034 0.966 31 H 0.047 0.953 32 H 0.386 0.614 33 H 0.257 0.743 34 H 0.047 0.953 35 H 0.050 0.950 36 H 0.082 0.918 37 H 0.393 0.607 38 H 0.178 0.822 39 H 0.152 0.848 40 H 0.158 0.842 41 H 0.136 0.864 42 H 0.136 0.864 43 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.650 7.199 -24.142 25.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.058 3.942 3 H 0.068 0.932 4 N -0.359 5.359 5 C -0.372 4.372 6 H 0.088 0.912 7 C -0.207 4.207 8 N -0.578 5.578 9 Si 0.738 3.262 10 H -0.213 1.213 11 H -0.217 1.217 12 H -0.213 1.213 13 C 0.033 3.967 14 H 0.106 0.894 15 C -0.210 4.210 16 N -0.361 5.361 17 C 0.366 3.634 18 O -0.388 6.388 19 C -0.396 4.396 20 S 0.516 5.484 21 C -0.361 4.361 22 C -0.181 4.181 23 C 0.074 3.926 24 N -0.064 5.064 25 C -0.075 4.075 26 C -0.234 4.234 27 C -0.211 4.211 28 C -0.150 4.150 29 H 0.075 0.925 30 H 0.053 0.947 31 H 0.067 0.933 32 H 0.220 0.780 33 H 0.067 0.933 34 H 0.066 0.934 35 H 0.069 0.931 36 H 0.101 0.899 37 H 0.227 0.773 38 H 0.195 0.805 39 H 0.169 0.831 40 H 0.175 0.825 41 H 0.154 0.846 42 H 0.154 0.846 43 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -5.512 7.956 -22.877 24.840 hybrid contribution -0.113 -0.455 -0.146 0.491 sum -5.625 7.500 -23.023 24.859 Atomic orbital electron populations 1.22460 0.99052 1.01201 0.99802 1.20385 0.92134 0.95554 0.86106 0.93155 1.42273 1.78207 1.10693 1.04749 1.19135 1.37143 0.93851 0.87097 0.91203 1.24742 1.01940 0.95949 0.98037 1.69650 1.50429 1.08618 1.29098 0.86275 0.77755 0.78600 0.83559 1.21295 1.21686 1.21257 1.21412 0.94575 0.97652 0.83039 0.89373 1.22052 0.94650 1.01826 1.02488 1.45972 1.66868 1.13477 1.09747 1.16703 0.78448 0.86512 0.81766 1.90930 1.49665 1.14246 1.83948 1.24764 1.17048 1.00041 0.97795 1.83167 1.57557 1.03468 1.04207 1.25078 1.07878 1.01711 1.01398 1.19761 1.05156 0.92101 1.01105 1.16976 1.00028 0.84598 0.91043 1.40891 1.14131 1.05329 1.46098 1.21757 0.89885 0.93078 1.02747 1.20856 0.99062 0.95917 1.07562 1.20886 0.96200 0.97078 1.06898 1.21766 0.97248 0.90009 1.05950 0.92505 0.94743 0.93337 0.77990 0.93348 0.93389 0.93050 0.89892 0.77320 0.80507 0.83088 0.82489 0.84591 0.84629 0.82459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.90 9.33 37.16 0.35 -2.56 16 2 C 0.17 3.18 2.52 -67.93 -0.17 3.01 16 3 H 0.05 0.93 8.08 -51.93 -0.42 0.51 16 4 N -0.72 -17.24 4.43 -53.42 -0.24 -17.48 16 5 C -0.24 -6.45 9.93 -15.06 -0.15 -6.60 16 6 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 7 C -0.01 -0.29 5.50 -17.43 -0.10 -0.38 16 8 N -0.93 -27.62 13.06 55.49 0.72 -26.90 16 9 Si 0.91 21.96 29.55 -169.99 -5.02 16.94 16 10 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 12 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 13 C 0.14 2.33 2.21 -67.93 -0.15 2.18 16 14 H 0.09 1.70 7.58 -51.93 -0.39 1.31 16 15 C -0.15 -2.59 9.33 37.16 0.35 -2.24 16 16 N -0.71 -9.90 4.38 -55.28 -0.24 -10.14 16 17 C 0.58 8.65 7.68 -13.11 -0.10 8.55 16 18 O -0.51 -9.26 12.69 5.13 0.07 -9.20 16 19 C -0.27 -3.28 6.43 -36.75 -0.24 -3.52 16 20 S 0.25 1.92 22.13 -107.50 -2.38 -0.46 16 21 C -0.22 -1.47 10.90 29.10 0.32 -1.15 16 22 C -0.15 -1.27 9.96 -41.26 -0.41 -1.68 16 23 C 0.18 2.14 5.99 -84.55 -0.51 1.63 16 24 N -0.39 -5.22 2.65 -61.59 -0.16 -5.39 16 25 C 0.05 0.76 8.53 -16.63 -0.14 0.62 16 26 C -0.21 -2.89 10.86 -39.76 -0.43 -3.32 16 27 C -0.19 -2.33 10.86 -39.75 -0.43 -2.76 16 28 C -0.02 -0.30 11.24 -16.63 -0.19 -0.48 16 29 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.03 0.49 7.44 -51.93 -0.39 0.11 16 31 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 32 H 0.39 10.03 7.59 -40.82 -0.31 9.72 16 33 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 34 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 36 H 0.08 1.61 7.45 -51.93 -0.39 1.23 16 37 H 0.39 4.53 7.49 -40.82 -0.31 4.23 16 38 H 0.18 0.62 8.06 -52.48 -0.42 0.19 16 39 H 0.15 1.03 8.06 -52.49 -0.42 0.61 16 40 H 0.16 2.28 7.44 -52.48 -0.39 1.89 16 41 H 0.14 1.65 8.06 -52.49 -0.42 1.23 16 42 H 0.14 1.39 8.06 -52.49 -0.42 0.97 16 43 H 0.16 1.48 8.06 -52.48 -0.42 1.06 16 LS Contribution 373.53 15.07 5.63 5.63 Total: -1.00 -32.26 373.53 -9.57 -41.83 By element: Atomic # 1 Polarization: 19.80 SS G_CDS: -5.94 Total: 13.86 kcal Atomic # 6 Polarization: -6.69 SS G_CDS: -2.00 Total: -8.70 kcal Atomic # 7 Polarization: -59.98 SS G_CDS: 0.08 Total: -59.90 kcal Atomic # 8 Polarization: -9.26 SS G_CDS: 0.07 Total: -9.20 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Atomic # 16 Polarization: 1.92 SS G_CDS: -2.38 Total: -0.46 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -32.26 -9.57 -41.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755247052.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.155 kcal (2) G-P(sol) polarization free energy of solvation -32.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.830 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds