Wall clock time and date at job start Tue Mar 31 2020 18:39:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 N 1.46500 * 109.47249 * 120.00351 * 2 1 3 5 5 C 1.36939 * 119.99555 * 274.99680 * 4 2 1 6 6 H 1.07999 * 120.00498 * 0.02562 * 5 4 2 7 7 C 1.38813 * 119.99885 * 179.97438 * 5 4 2 8 8 N 1.31623 * 120.00026 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00060 * 179.97438 * 7 5 4 10 10 H 1.48507 * 109.46870 * 60.00342 * 9 7 5 11 11 H 1.48498 * 109.46892 * 179.97438 * 9 7 5 12 12 H 1.48494 * 109.47084 * 300.00260 * 9 7 5 13 13 C 1.52999 * 109.46623 * 239.99904 * 2 1 3 14 14 H 1.09000 * 109.47486 * 299.99829 * 13 2 1 15 15 C 1.53006 * 109.46997 * 179.97438 * 13 2 1 16 16 N 1.46505 * 109.47266 * 60.00137 * 13 2 1 17 17 C 1.34771 * 120.00080 * 204.99535 * 16 13 2 18 18 O 1.21761 * 119.99822 * 0.02562 * 17 16 13 19 19 C 1.46111 * 120.00113 * 179.97438 * 17 16 13 20 20 S 1.75813 * 125.47580 * 0.02575 * 19 17 16 21 21 C 1.70570 * 91.67367 * 180.02562 * 20 19 17 22 22 C 1.33575 * 111.17788 * 0.02562 * 21 20 19 23 23 C 1.37353 * 125.47735 * 179.71937 * 19 17 16 24 24 N 1.39881 * 123.48892 * 0.02562 * 23 19 17 25 25 C 1.36598 * 125.67031 * 309.68952 * 24 23 19 26 26 C 1.34841 * 108.19692 * 179.89073 * 25 24 23 27 27 C 1.40963 * 107.47471 * 0.36978 * 26 25 24 28 28 C 1.34843 * 107.47238 * 359.76829 * 27 26 25 29 29 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 30 30 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 31 31 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 32 32 H 0.96998 * 120.00364 * 94.99433 * 4 2 1 33 33 H 0.96993 * 120.00204 * 179.97438 * 8 7 5 34 34 H 1.09001 * 109.47377 * 180.02562 * 15 13 2 35 35 H 1.09000 * 109.46866 * 300.00212 * 15 13 2 36 36 H 1.08996 * 109.47261 * 59.99820 * 15 13 2 37 37 H 0.97003 * 119.99519 * 24.99891 * 16 13 2 38 38 H 1.08006 * 124.40872 * 180.02562 * 21 20 19 39 39 H 1.07997 * 122.46248 * 179.97438 * 22 21 20 40 40 H 1.08003 * 125.90112 * 0.04105 * 25 24 23 41 41 H 1.07997 * 126.26250 * 180.15543 * 26 25 24 42 42 H 1.07996 * 126.26738 * 179.75322 * 27 26 25 43 43 H 1.08003 * 125.90274 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.1493 -0.0075 2.3757 6 1 1.8920 1.0403 2.4244 7 6 2.6115 -0.6620 3.5092 8 7 2.9245 -1.9391 3.4501 9 14 2.7906 0.2701 5.1181 10 1 1.4686 0.8079 5.5285 11 1 3.2983 -0.6487 6.1685 12 1 3.7467 1.3917 4.9366 13 6 2.0399 -0.7213 -1.2493 14 1 1.6766 -1.7490 -1.2493 15 6 3.5700 -0.7208 -1.2497 16 7 1.5516 -0.0307 -2.4455 17 6 1.4228 -0.7030 -3.6064 18 8 1.7120 -1.8845 -3.6609 19 6 0.9353 -0.0144 -4.7992 20 16 0.4774 1.6810 -4.8832 21 6 0.0815 1.5439 -6.5366 22 6 0.2850 0.3005 -6.9800 23 6 0.7665 -0.5860 -6.0367 24 7 1.0471 -1.9285 -6.3115 25 6 2.2070 -2.5796 -6.0007 26 6 2.0992 -3.8561 -6.4217 27 6 0.8316 -3.9983 -7.0215 28 6 0.2091 -2.8049 -6.9405 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 2.2491 -1.6318 1.1526 33 1 3.2478 -2.3964 4.2420 34 1 3.9333 -1.2342 -2.1399 35 1 3.9329 0.3070 -1.2499 36 1 3.9338 -1.2343 -0.3597 37 1 1.3209 0.9105 -2.4018 38 1 -0.2859 2.3567 -7.1456 39 1 0.0923 0.0109 -8.0024 40 1 3.0618 -2.1474 -5.5016 41 1 2.8485 -4.6273 -6.3211 42 1 0.4320 -4.8983 -7.4650 43 1 -0.7808 -2.5805 -7.3097 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755247052.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:39:17 Heat of formation + Delta-G solvation = 52.194948 kcal Electronic energy + Delta-G solvation = -26015.757530 eV Core-core repulsion = 22381.631488 eV Total energy + Delta-G solvation = -3634.126042 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.49077 -40.87052 -38.82005 -38.06057 -35.64355 -33.65319 -32.88410 -31.60492 -30.19136 -30.02409 -29.44424 -25.99612 -25.91752 -24.40939 -22.51476 -22.22765 -21.63089 -21.27682 -20.02906 -19.79903 -19.29476 -18.14730 -17.23454 -16.75202 -16.53503 -16.13888 -15.74636 -15.46558 -15.34521 -15.18243 -14.94050 -14.76791 -14.59608 -14.22985 -14.11955 -13.83705 -13.47844 -13.41374 -13.19499 -13.15218 -12.94613 -12.93420 -12.71528 -12.62114 -12.29919 -12.21161 -12.14239 -11.74495 -11.51316 -11.16098 -10.97517 -10.41054 -10.26395 -9.84707 -9.14050 -9.02790 -9.01489 -7.91818 -5.21433 -0.78185 0.24404 0.71995 0.96595 1.49095 1.51765 1.57669 1.58349 1.94445 2.03063 2.10266 2.16397 2.59298 3.42098 3.61369 3.77950 3.91191 3.97948 4.02395 4.16092 4.28115 4.31904 4.34012 4.53243 4.55490 4.66750 4.72721 4.77384 4.83926 4.89997 4.93965 4.98365 5.02705 5.11369 5.27457 5.35098 5.38845 5.43874 5.48187 5.55558 6.04957 6.25681 6.28263 6.40118 6.54942 7.08343 7.34886 8.07342 8.31147 9.31498 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.017715 B = 0.002873 C = 0.002576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1580.204054 B = 9744.939184 C =10868.994397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.168 3.832 3 H 0.064 0.936 4 N -0.730 5.730 5 C -0.235 4.235 6 H 0.082 0.918 7 C -0.075 4.075 8 N -0.971 5.971 9 Si 0.972 3.028 10 H -0.278 1.278 11 H -0.301 1.301 12 H -0.276 1.276 13 C 0.154 3.846 14 H 0.059 0.941 15 C -0.142 4.142 16 N -0.700 5.700 17 C 0.579 3.421 18 O -0.553 6.553 19 C -0.318 4.318 20 S 0.306 5.694 21 C -0.194 4.194 22 C -0.164 4.164 23 C 0.168 3.832 24 N -0.396 5.396 25 C 0.030 3.970 26 C -0.227 4.227 27 C -0.202 4.202 28 C -0.023 4.023 29 H 0.046 0.954 30 H 0.071 0.929 31 H 0.030 0.970 32 H 0.371 0.629 33 H 0.250 0.750 34 H 0.047 0.953 35 H 0.065 0.935 36 H 0.053 0.947 37 H 0.408 0.592 38 H 0.219 0.781 39 H 0.169 0.831 40 H 0.144 0.856 41 H 0.141 0.859 42 H 0.156 0.844 43 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.440 10.602 -26.084 29.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.059 3.941 3 H 0.082 0.918 4 N -0.370 5.370 5 C -0.367 4.367 6 H 0.100 0.900 7 C -0.268 4.268 8 N -0.621 5.621 9 Si 0.801 3.199 10 H -0.204 1.204 11 H -0.227 1.227 12 H -0.202 1.202 13 C 0.049 3.951 14 H 0.078 0.922 15 C -0.200 4.200 16 N -0.352 5.352 17 C 0.367 3.633 18 O -0.433 6.433 19 C -0.440 4.440 20 S 0.574 5.426 21 C -0.333 4.333 22 C -0.194 4.194 23 C 0.060 3.940 24 N -0.070 5.070 25 C -0.098 4.098 26 C -0.251 4.251 27 C -0.226 4.226 28 C -0.149 4.149 29 H 0.066 0.934 30 H 0.089 0.911 31 H 0.049 0.951 32 H 0.203 0.797 33 H 0.058 0.942 34 H 0.066 0.934 35 H 0.084 0.916 36 H 0.072 0.928 37 H 0.244 0.756 38 H 0.235 0.765 39 H 0.186 0.814 40 H 0.162 0.838 41 H 0.158 0.842 42 H 0.174 0.826 43 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -7.336 11.448 -24.856 28.332 hybrid contribution 0.386 -1.407 0.319 1.493 sum -6.950 10.042 -24.537 27.408 Atomic orbital electron populations 1.22311 0.97583 1.00498 1.01109 1.20556 0.92924 0.95672 0.84914 0.91809 1.42457 1.78473 1.10218 1.05877 1.19562 1.34952 0.94314 0.87826 0.90040 1.25544 1.02982 0.96781 1.01447 1.69825 1.52543 1.10329 1.29447 0.85239 0.77953 0.77291 0.79424 1.20440 1.22741 1.20187 1.20931 0.94266 0.96260 0.83687 0.92244 1.21919 0.94817 1.02247 1.01034 1.45690 1.66859 1.13971 1.08654 1.17120 0.77547 0.86160 0.82509 1.90911 1.51411 1.16265 1.84708 1.24576 1.19800 1.03021 0.96650 1.82960 1.55695 0.99279 1.04686 1.25615 1.04720 1.01885 1.01056 1.19869 1.05974 0.92167 1.01398 1.17482 1.00321 0.84297 0.91928 1.41057 1.13755 1.06364 1.45806 1.21686 0.90557 0.93741 1.03817 1.21126 1.00094 0.95985 1.07876 1.21200 0.95787 0.98288 1.07314 1.22303 0.98031 0.89692 1.04897 0.93447 0.91058 0.95074 0.79665 0.94169 0.93365 0.91566 0.92776 0.75585 0.76474 0.81369 0.83842 0.84155 0.82648 0.79573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.28 9.33 71.98 0.67 -4.61 16 2 C 0.17 6.26 2.52 44.99 0.11 6.37 16 3 H 0.06 2.23 8.08 -2.39 -0.02 2.21 16 4 N -0.73 -35.67 4.43 -322.93 -1.43 -37.10 16 5 C -0.23 -12.54 9.93 84.03 0.83 -11.71 16 6 H 0.08 4.09 7.83 -2.91 -0.02 4.06 16 7 C -0.08 -4.25 5.50 84.86 0.47 -3.79 16 8 N -0.97 -59.39 13.06 21.65 0.28 -59.11 16 9 Si 0.97 45.41 29.55 68.60 2.03 47.44 16 10 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 11 H -0.30 -14.42 7.11 99.48 0.71 -13.71 16 12 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 13 C 0.15 5.30 2.21 44.99 0.10 5.40 16 14 H 0.06 2.42 7.58 -2.39 -0.02 2.40 16 15 C -0.14 -4.96 9.33 71.98 0.67 -4.29 16 16 N -0.70 -18.96 4.38 -447.01 -1.96 -20.92 16 17 C 0.58 17.26 7.68 86.29 0.66 17.93 16 18 O -0.55 -20.99 12.69 -4.54 -0.06 -21.05 16 19 C -0.32 -7.18 6.43 24.11 0.15 -7.02 16 20 S 0.31 3.57 22.13 -56.49 -1.25 2.31 16 21 C -0.19 -1.62 10.90 66.76 0.73 -0.89 16 22 C -0.16 -2.24 9.96 21.18 0.21 -2.03 16 23 C 0.17 3.74 5.99 37.62 0.23 3.97 16 24 N -0.40 -10.54 2.65 -348.76 -0.92 -11.46 16 25 C 0.03 0.91 8.53 83.17 0.71 1.62 16 26 C -0.23 -6.51 10.86 22.16 0.24 -6.27 16 27 C -0.20 -5.03 10.86 22.16 0.24 -4.79 16 28 C -0.02 -0.55 11.24 83.17 0.93 0.39 16 29 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 30 H 0.07 1.88 7.44 -2.39 -0.02 1.86 16 31 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.37 20.15 7.59 -92.71 -0.70 19.45 16 33 H 0.25 14.95 8.31 -92.71 -0.77 14.18 16 34 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 36 H 0.05 2.21 7.45 -2.39 -0.02 2.19 16 37 H 0.41 8.47 7.49 -92.71 -0.69 7.78 16 38 H 0.22 0.06 8.06 -2.91 -0.02 0.04 16 39 H 0.17 1.68 8.06 -2.91 -0.02 1.66 16 40 H 0.14 4.57 7.44 -2.91 -0.02 4.55 16 41 H 0.14 3.66 8.06 -2.91 -0.02 3.64 16 42 H 0.16 3.06 8.06 -2.91 -0.02 3.04 16 43 H 0.19 3.08 8.06 -2.91 -0.02 3.05 16 Total: -1.00 -73.38 373.53 3.29 -70.08 By element: Atomic # 1 Polarization: 39.87 SS G_CDS: -0.36 Total: 39.51 kcal Atomic # 6 Polarization: -16.68 SS G_CDS: 6.96 Total: -9.72 kcal Atomic # 7 Polarization: -124.56 SS G_CDS: -4.03 Total: -128.59 kcal Atomic # 8 Polarization: -20.99 SS G_CDS: -0.06 Total: -21.05 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 2.03 Total: 47.44 kcal Atomic # 16 Polarization: 3.57 SS G_CDS: -1.25 Total: 2.31 kcal Total: -73.38 3.29 -70.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755247052.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.277 kcal (2) G-P(sol) polarization free energy of solvation -73.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.082 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds