Wall clock time and date at job start Tue Mar 31 2020 18:39:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.46954 * 2 1 4 4 N 1.46499 * 109.47277 * 120.00156 * 2 1 3 5 5 C 1.34774 * 119.99966 * 275.00029 * 4 2 1 6 6 O 1.21754 * 120.00370 * 359.97438 * 5 4 2 7 7 C 1.46113 * 119.99849 * 180.02562 * 5 4 2 8 8 S 1.75823 * 125.47789 * 0.02562 * 7 5 4 9 9 C 1.70570 * 91.67276 * 180.02562 * 8 7 5 10 10 C 1.33576 * 111.17776 * 0.02562 * 9 8 7 11 11 C 1.37352 * 125.47681 * 179.72018 * 7 5 4 12 12 N 1.39880 * 123.49030 * 0.02562 * 11 7 5 13 13 C 1.36601 * 125.66804 * 309.69689 * 12 11 7 14 14 C 1.34842 * 108.19595 * 179.83211 * 13 12 11 15 15 C 1.40964 * 107.47717 * 0.41923 * 14 13 12 16 16 C 1.34844 * 107.46828 * 359.73671 * 15 14 13 17 17 C 1.53001 * 109.47030 * 240.00114 * 2 1 3 18 18 H 1.09000 * 109.47570 * 299.99971 * 17 2 1 19 19 C 1.52998 * 109.47014 * 179.97438 * 17 2 1 20 20 N 1.46507 * 109.47045 * 60.00374 * 17 2 1 21 21 C 1.36935 * 119.99742 * 205.00075 * 20 17 2 22 22 H 1.07999 * 120.00083 * 359.97438 * 21 20 17 23 23 C 1.38817 * 119.99986 * 179.97438 * 21 20 17 24 24 N 1.31617 * 119.99464 * 0.27719 * 23 21 20 25 25 Si 1.86800 * 119.99902 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.47364 * 0.02562 * 25 23 21 27 27 H 1.48508 * 109.46883 * 120.00276 * 25 23 21 28 28 H 1.48497 * 109.46870 * 240.00086 * 25 23 21 29 29 H 1.09000 * 109.46920 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46707 * 299.99441 * 1 2 3 31 31 H 1.08996 * 109.46997 * 59.99927 * 1 2 3 32 32 H 0.96999 * 119.99984 * 94.99874 * 4 2 1 33 33 H 1.08003 * 124.41280 * 179.97438 * 9 8 7 34 34 H 1.07999 * 122.46293 * 180.02562 * 10 9 8 35 35 H 1.08001 * 125.90750 * 359.95503 * 13 12 11 36 36 H 1.08007 * 126.26302 * 180.19923 * 14 13 12 37 37 H 1.07995 * 126.27257 * 179.70487 * 15 14 13 38 38 H 1.08001 * 125.89799 * 179.97438 * 16 15 14 39 39 H 1.09000 * 109.47695 * 299.99933 * 19 17 2 40 40 H 1.09005 * 109.47240 * 60.00393 * 19 17 2 41 41 H 1.09005 * 109.47291 * 180.02562 * 19 17 2 42 42 H 0.96999 * 120.00180 * 24.99002 * 20 17 2 43 43 H 0.97001 * 120.00638 * 359.71685 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1471 -0.0183 2.3571 6 8 1.8580 1.1631 2.4118 7 6 2.6347 -0.7070 3.5499 8 16 3.0938 -2.4022 3.6335 9 6 3.4875 -2.2656 5.2875 10 6 3.2814 -1.0229 5.7316 11 6 2.8137 -0.1328 4.7847 12 7 2.5441 1.2126 5.0567 13 6 2.9915 2.2777 4.3279 14 6 2.5213 3.4055 4.8982 15 6 1.7641 3.0261 6.0251 16 6 1.7945 1.6800 6.0986 17 6 2.0400 -0.7212 -1.2493 18 1 1.6767 -1.7489 -1.2494 19 6 3.5700 -0.7207 -1.2496 20 7 1.5517 -0.0305 -2.4455 21 6 1.4209 -0.7136 -3.6250 22 1 1.6781 -1.7614 -3.6736 23 6 0.9577 -0.0593 -4.7583 24 7 0.6495 1.2190 -4.7003 25 14 0.7800 -0.9910 -6.3676 26 1 1.1948 -2.4032 -6.1705 27 1 -0.6371 -0.9489 -6.8100 28 1 1.6402 -0.3616 -7.4015 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5138 -0.8900 32 1 2.2491 -1.6318 1.1525 33 1 3.8548 -3.0784 5.8966 34 1 3.4724 -0.7337 6.7545 35 1 3.6127 2.2256 3.4459 36 1 2.6962 4.4151 4.5565 37 1 1.2536 3.6916 6.7053 38 1 1.3102 1.0758 6.8515 39 1 3.9330 0.3071 -1.2498 40 1 3.9337 -1.2343 -0.3596 41 1 3.9334 -1.2341 -2.1398 42 1 1.3209 0.9106 -2.4018 43 1 0.7421 1.7028 -3.8648 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755247053.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:39:22 Heat of formation + Delta-G solvation = 71.420531 kcal Electronic energy + Delta-G solvation = -26063.127206 eV Core-core repulsion = 22429.834848 eV Total energy + Delta-G solvation = -3633.292358 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.59693 -39.74195 -37.98239 -36.78199 -34.23487 -32.15444 -31.98244 -30.23305 -29.04340 -28.59268 -28.13410 -25.15660 -23.89810 -23.11660 -21.59858 -21.23255 -20.37837 -20.29536 -19.12536 -18.76387 -17.65959 -17.22684 -16.20723 -15.65842 -15.17170 -15.06577 -14.63274 -14.46829 -14.14881 -13.83657 -13.66087 -13.58718 -13.41732 -13.27539 -12.94935 -12.72888 -12.63441 -12.29493 -12.03150 -11.98348 -11.78554 -11.54423 -11.31651 -10.99675 -10.70351 -10.54638 -10.14962 -10.09563 -10.01392 -9.63672 -9.31620 -9.23423 -9.07339 -8.86053 -8.33767 -8.04786 -7.09792 -6.13240 -3.14704 -0.04229 0.90744 1.31691 1.65477 2.49213 2.90715 3.03522 3.06540 3.14128 3.49552 3.56185 3.65107 4.40048 4.61840 4.65037 4.70340 4.97703 5.12809 5.22224 5.31858 5.40628 5.44213 5.48354 5.54576 5.65683 5.66747 5.72587 5.73204 5.97338 6.04902 6.23908 6.27508 6.30734 6.32057 6.36173 6.46821 6.66993 6.77324 6.89104 6.99572 7.20746 7.42753 7.45335 7.76788 8.12886 8.71727 9.16728 10.03080 10.17205 11.34865 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.017846 B = 0.002882 C = 0.002582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.612702 B = 9713.985121 C =10841.707027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.137 3.863 3 H 0.087 0.913 4 N -0.710 5.710 5 C 0.582 3.418 6 O -0.511 6.511 7 C -0.275 4.275 8 S 0.249 5.751 9 C -0.221 4.221 10 C -0.149 4.149 11 C 0.182 3.818 12 N -0.390 5.390 13 C 0.053 3.947 14 C -0.210 4.210 15 C -0.185 4.185 16 C -0.024 4.024 17 C 0.174 3.826 18 H 0.052 0.948 19 C -0.164 4.164 20 N -0.729 5.729 21 C -0.332 4.332 22 H 0.065 0.935 23 C -0.043 4.043 24 N -0.942 5.942 25 Si 1.085 2.915 26 H -0.295 1.295 27 H -0.293 1.293 28 H -0.293 1.293 29 H 0.052 0.948 30 H 0.049 0.951 31 H 0.078 0.922 32 H 0.393 0.607 33 H 0.178 0.822 34 H 0.152 0.848 35 H 0.158 0.842 36 H 0.136 0.864 37 H 0.136 0.864 38 H 0.158 0.842 39 H 0.046 0.954 40 H 0.035 0.965 41 H 0.057 0.943 42 H 0.368 0.632 43 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.349 -7.603 24.219 26.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.033 3.967 3 H 0.105 0.895 4 N -0.361 5.361 5 C 0.367 3.633 6 O -0.388 6.388 7 C -0.398 4.398 8 S 0.516 5.484 9 C -0.360 4.360 10 C -0.181 4.181 11 C 0.075 3.925 12 N -0.065 5.065 13 C -0.075 4.075 14 C -0.234 4.234 15 C -0.210 4.210 16 C -0.150 4.150 17 C 0.064 3.936 18 H 0.070 0.930 19 C -0.224 4.224 20 N -0.372 5.372 21 C -0.462 4.462 22 H 0.083 0.917 23 C -0.241 4.241 24 N -0.587 5.587 25 Si 0.916 3.084 26 H -0.221 1.221 27 H -0.220 1.220 28 H -0.220 1.220 29 H 0.071 0.929 30 H 0.068 0.932 31 H 0.097 0.903 32 H 0.227 0.773 33 H 0.195 0.805 34 H 0.170 0.830 35 H 0.175 0.825 36 H 0.154 0.846 37 H 0.154 0.846 38 H 0.176 0.824 39 H 0.065 0.935 40 H 0.054 0.946 41 H 0.076 0.924 42 H 0.202 0.798 43 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 5.821 -8.362 21.479 23.773 hybrid contribution 0.524 0.685 2.767 2.898 sum 6.344 -7.677 24.246 26.212 Atomic orbital electron populations 1.22043 0.94716 1.01929 1.02326 1.21402 0.94560 0.97557 0.83194 0.89504 1.45946 1.66949 1.13543 1.09645 1.16707 0.78459 0.86523 0.81660 1.90927 1.49679 1.14322 1.83882 1.24742 1.16406 0.99364 0.99270 1.83176 1.57872 1.03290 1.04056 1.25084 1.07820 1.01731 1.01321 1.19765 1.04427 0.92434 1.01514 1.16977 0.99044 0.84556 0.91960 1.40895 1.40204 1.01932 1.23442 1.21769 1.03267 0.84723 0.97721 1.20864 1.05432 0.97735 0.99358 1.20889 1.05442 0.93741 1.00958 1.21766 1.03238 0.95081 0.94917 1.20321 0.92147 0.95551 0.85611 0.93031 1.22439 0.98917 1.01113 0.99953 1.42296 1.79354 1.09818 1.05748 1.20041 1.42239 0.95136 0.88833 0.91651 1.25759 0.99269 0.97469 1.01578 1.70809 1.51133 1.08206 1.28574 0.83156 0.76429 0.73666 0.75133 1.22149 1.22009 1.22012 0.92923 0.93216 0.90337 0.77256 0.80463 0.83044 0.82487 0.84570 0.84605 0.82446 0.93458 0.94587 0.92426 0.79782 0.93197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.64 9.33 37.16 0.35 -2.30 16 2 C 0.14 2.33 2.21 -67.93 -0.15 2.18 16 3 H 0.09 1.64 7.58 -51.93 -0.39 1.25 16 4 N -0.71 -9.91 4.38 -55.29 -0.24 -10.15 16 5 C 0.58 8.64 7.68 -13.10 -0.10 8.53 16 6 O -0.51 -9.22 12.69 5.14 0.07 -9.16 16 7 C -0.28 -3.29 6.43 -36.75 -0.24 -3.52 16 8 S 0.25 1.92 22.13 -107.50 -2.38 -0.46 16 9 C -0.22 -1.45 10.90 29.10 0.32 -1.13 16 10 C -0.15 -1.26 9.96 -41.26 -0.41 -1.68 16 11 C 0.18 2.14 5.99 -84.55 -0.51 1.64 16 12 N -0.39 -5.20 2.65 -61.59 -0.16 -5.36 16 13 C 0.05 0.76 8.52 -16.63 -0.14 0.62 16 14 C -0.21 -2.88 10.86 -39.75 -0.43 -3.31 16 15 C -0.19 -2.31 10.86 -39.75 -0.43 -2.74 16 16 C -0.02 -0.30 11.24 -16.63 -0.19 -0.48 16 17 C 0.17 3.30 2.52 -67.93 -0.17 3.13 16 18 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 19 C -0.16 -2.87 9.33 37.16 0.35 -2.53 16 20 N -0.73 -17.50 4.43 -53.42 -0.24 -17.73 16 21 C -0.33 -8.99 9.93 -15.06 -0.15 -9.14 16 22 H 0.07 1.75 7.83 -52.49 -0.41 1.34 16 23 C -0.04 -1.22 5.50 -17.43 -0.10 -1.31 16 24 N -0.94 -28.75 13.70 55.49 0.76 -27.99 16 25 Si 1.09 25.62 29.92 -169.99 -5.09 20.54 16 26 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 27 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 28 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 29 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 31 H 0.08 1.53 7.44 -51.93 -0.39 1.15 16 32 H 0.39 4.57 7.49 -40.82 -0.31 4.26 16 33 H 0.18 0.61 8.06 -52.48 -0.42 0.18 16 34 H 0.15 1.03 8.06 -52.49 -0.42 0.60 16 35 H 0.16 2.31 7.44 -52.49 -0.39 1.92 16 36 H 0.14 1.66 8.06 -52.48 -0.42 1.24 16 37 H 0.14 1.37 8.06 -52.49 -0.42 0.95 16 38 H 0.16 1.45 8.06 -52.49 -0.42 1.03 16 39 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 40 H 0.04 0.51 7.45 -51.93 -0.39 0.12 16 41 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 42 H 0.37 9.30 6.42 -40.82 -0.26 9.03 16 43 H 0.26 7.73 6.77 -40.82 -0.28 7.46 16 LS Contribution 371.82 15.07 5.60 5.60 Total: -1.00 -33.27 371.82 -9.51 -42.79 By element: Atomic # 1 Polarization: 19.79 SS G_CDS: -5.83 Total: 13.96 kcal Atomic # 6 Polarization: -10.03 SS G_CDS: -2.00 Total: -12.03 kcal Atomic # 7 Polarization: -61.35 SS G_CDS: 0.12 Total: -61.23 kcal Atomic # 8 Polarization: -9.22 SS G_CDS: 0.07 Total: -9.16 kcal Atomic # 14 Polarization: 25.62 SS G_CDS: -5.09 Total: 20.54 kcal Atomic # 16 Polarization: 1.92 SS G_CDS: -2.38 Total: -0.46 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -33.27 -9.51 -42.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755247053.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.207 kcal (2) G-P(sol) polarization free energy of solvation -33.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.786 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds