Wall clock time and date at job start Tue Mar 31 2020 18:39:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.46954 * 2 1 4 4 N 1.46499 * 109.47277 * 120.00156 * 2 1 3 5 5 C 1.34774 * 119.99966 * 275.00029 * 4 2 1 6 6 O 1.21754 * 120.00370 * 359.97438 * 5 4 2 7 7 C 1.46113 * 119.99849 * 180.02562 * 5 4 2 8 8 S 1.75823 * 125.47789 * 0.02562 * 7 5 4 9 9 C 1.70570 * 91.67276 * 180.02562 * 8 7 5 10 10 C 1.33576 * 111.17776 * 0.02562 * 9 8 7 11 11 C 1.37352 * 125.47681 * 179.72018 * 7 5 4 12 12 N 1.39880 * 123.49030 * 0.02562 * 11 7 5 13 13 C 1.36601 * 125.66804 * 309.69689 * 12 11 7 14 14 C 1.34842 * 108.19595 * 179.83211 * 13 12 11 15 15 C 1.40964 * 107.47717 * 0.41923 * 14 13 12 16 16 C 1.34844 * 107.46828 * 359.73671 * 15 14 13 17 17 C 1.53001 * 109.47030 * 240.00114 * 2 1 3 18 18 H 1.09000 * 109.47570 * 299.99971 * 17 2 1 19 19 C 1.52998 * 109.47014 * 179.97438 * 17 2 1 20 20 N 1.46507 * 109.47045 * 60.00374 * 17 2 1 21 21 C 1.36935 * 119.99742 * 205.00075 * 20 17 2 22 22 H 1.07999 * 120.00083 * 359.97438 * 21 20 17 23 23 C 1.38817 * 119.99986 * 179.97438 * 21 20 17 24 24 N 1.31617 * 119.99464 * 0.27719 * 23 21 20 25 25 Si 1.86800 * 119.99902 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.47364 * 0.02562 * 25 23 21 27 27 H 1.48508 * 109.46883 * 120.00276 * 25 23 21 28 28 H 1.48497 * 109.46870 * 240.00086 * 25 23 21 29 29 H 1.09000 * 109.46920 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46707 * 299.99441 * 1 2 3 31 31 H 1.08996 * 109.46997 * 59.99927 * 1 2 3 32 32 H 0.96999 * 119.99984 * 94.99874 * 4 2 1 33 33 H 1.08003 * 124.41280 * 179.97438 * 9 8 7 34 34 H 1.07999 * 122.46293 * 180.02562 * 10 9 8 35 35 H 1.08001 * 125.90750 * 359.95503 * 13 12 11 36 36 H 1.08007 * 126.26302 * 180.19923 * 14 13 12 37 37 H 1.07995 * 126.27257 * 179.70487 * 15 14 13 38 38 H 1.08001 * 125.89799 * 179.97438 * 16 15 14 39 39 H 1.09000 * 109.47695 * 299.99933 * 19 17 2 40 40 H 1.09005 * 109.47240 * 60.00393 * 19 17 2 41 41 H 1.09005 * 109.47291 * 180.02562 * 19 17 2 42 42 H 0.96999 * 120.00180 * 24.99002 * 20 17 2 43 43 H 0.97001 * 120.00638 * 359.71685 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1471 -0.0183 2.3571 6 8 1.8580 1.1631 2.4118 7 6 2.6347 -0.7070 3.5499 8 16 3.0938 -2.4022 3.6335 9 6 3.4875 -2.2656 5.2875 10 6 3.2814 -1.0229 5.7316 11 6 2.8137 -0.1328 4.7847 12 7 2.5441 1.2126 5.0567 13 6 2.9915 2.2777 4.3279 14 6 2.5213 3.4055 4.8982 15 6 1.7641 3.0261 6.0251 16 6 1.7945 1.6800 6.0986 17 6 2.0400 -0.7212 -1.2493 18 1 1.6767 -1.7489 -1.2494 19 6 3.5700 -0.7207 -1.2496 20 7 1.5517 -0.0305 -2.4455 21 6 1.4209 -0.7136 -3.6250 22 1 1.6781 -1.7614 -3.6736 23 6 0.9577 -0.0593 -4.7583 24 7 0.6495 1.2190 -4.7003 25 14 0.7800 -0.9910 -6.3676 26 1 1.1948 -2.4032 -6.1705 27 1 -0.6371 -0.9489 -6.8100 28 1 1.6402 -0.3616 -7.4015 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5138 -0.8900 32 1 2.2491 -1.6318 1.1525 33 1 3.8548 -3.0784 5.8966 34 1 3.4724 -0.7337 6.7545 35 1 3.6127 2.2256 3.4459 36 1 2.6962 4.4151 4.5565 37 1 1.2536 3.6916 6.7053 38 1 1.3102 1.0758 6.8515 39 1 3.9330 0.3071 -1.2498 40 1 3.9337 -1.2343 -0.3596 41 1 3.9334 -1.2341 -2.1398 42 1 1.3209 0.9106 -2.4018 43 1 0.7421 1.7028 -3.8648 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755247053.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:39:21 Heat of formation + Delta-G solvation = 51.496520 kcal Electronic energy + Delta-G solvation = -26063.991176 eV Core-core repulsion = 22429.834848 eV Total energy + Delta-G solvation = -3634.156328 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.52549 -40.94232 -38.89244 -38.18629 -35.91353 -33.74713 -32.91528 -31.60691 -30.16816 -29.95206 -29.46445 -26.02172 -25.83140 -24.51036 -22.63548 -22.27334 -21.74685 -21.31082 -20.05103 -19.84227 -19.51633 -18.24227 -17.28131 -17.04345 -16.31577 -16.24049 -15.82684 -15.64174 -15.40982 -15.30446 -15.00535 -14.83884 -14.68424 -14.31731 -14.25711 -13.79701 -13.58958 -13.44163 -13.27750 -13.18820 -13.00429 -12.94571 -12.64990 -12.51140 -12.31433 -12.17460 -11.84568 -11.72217 -11.33014 -11.17386 -11.00694 -10.44642 -10.32979 -9.88754 -9.17376 -9.14272 -9.04536 -8.36303 -5.31730 -0.81941 0.20812 0.68708 0.93576 1.54486 1.59602 1.71045 1.81769 1.87919 1.98424 2.06132 2.13324 2.73477 3.43020 3.53203 3.68458 3.79868 3.87801 3.97262 4.05118 4.18429 4.26069 4.30778 4.44361 4.50627 4.61270 4.64247 4.72263 4.74457 4.80255 4.87631 4.92167 4.97239 5.01968 5.15361 5.32034 5.33710 5.36330 5.39101 5.63111 6.01940 6.22192 6.33399 6.50242 6.51835 7.01140 7.08706 7.97404 8.10201 9.15168 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.017846 B = 0.002882 C = 0.002582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.612702 B = 9713.985121 C =10841.707027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.154 3.846 3 H 0.062 0.938 4 N -0.700 5.700 5 C 0.580 3.420 6 O -0.553 6.553 7 C -0.320 4.320 8 S 0.305 5.695 9 C -0.193 4.193 10 C -0.163 4.163 11 C 0.170 3.830 12 N -0.396 5.396 13 C 0.029 3.971 14 C -0.226 4.226 15 C -0.201 4.201 16 C -0.022 4.022 17 C 0.174 3.826 18 H 0.061 0.939 19 C -0.154 4.154 20 N -0.742 5.742 21 C -0.321 4.321 22 H 0.072 0.928 23 C -0.106 4.106 24 N -0.978 5.978 25 Si 1.131 2.869 26 H -0.267 1.267 27 H -0.294 1.294 28 H -0.295 1.295 29 H 0.065 0.935 30 H 0.046 0.954 31 H 0.051 0.949 32 H 0.408 0.592 33 H 0.219 0.781 34 H 0.170 0.830 35 H 0.142 0.858 36 H 0.140 0.860 37 H 0.157 0.843 38 H 0.188 0.812 39 H 0.032 0.968 40 H 0.073 0.927 41 H 0.045 0.955 42 H 0.358 0.642 43 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.201 -11.221 26.443 29.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.049 3.951 3 H 0.080 0.920 4 N -0.352 5.352 5 C 0.368 3.632 6 O -0.432 6.432 7 C -0.442 4.442 8 S 0.572 5.428 9 C -0.331 4.331 10 C -0.194 4.194 11 C 0.061 3.939 12 N -0.070 5.070 13 C -0.099 4.099 14 C -0.250 4.250 15 C -0.225 4.225 16 C -0.148 4.148 17 C 0.065 3.935 18 H 0.079 0.921 19 C -0.214 4.214 20 N -0.384 5.384 21 C -0.453 4.453 22 H 0.090 0.910 23 C -0.297 4.297 24 N -0.627 5.627 25 Si 0.957 3.043 26 H -0.192 1.192 27 H -0.221 1.221 28 H -0.222 1.222 29 H 0.084 0.916 30 H 0.065 0.935 31 H 0.070 0.930 32 H 0.244 0.756 33 H 0.236 0.764 34 H 0.187 0.813 35 H 0.160 0.840 36 H 0.158 0.842 37 H 0.174 0.826 38 H 0.205 0.795 39 H 0.051 0.949 40 H 0.092 0.908 41 H 0.064 0.936 42 H 0.190 0.810 43 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 6.711 -12.059 23.751 27.470 hybrid contribution 0.316 1.704 2.223 2.819 sum 7.027 -10.355 25.974 28.832 Atomic orbital electron populations 1.21915 0.95071 1.02209 1.00820 1.20920 0.94079 0.96362 0.83779 0.91983 1.45671 1.66956 1.14022 1.08577 1.17127 0.77571 0.86157 0.82393 1.90908 1.51400 1.16277 1.84659 1.24557 1.19288 1.02320 0.98022 1.82977 1.56034 0.99140 1.04602 1.25623 1.04646 1.01913 1.00945 1.19877 1.05212 0.92476 1.01835 1.17485 0.99322 0.84206 0.92883 1.41058 1.40055 1.02564 1.23307 1.21672 1.04369 0.85849 0.98049 1.21130 1.05830 0.97943 1.00130 1.21203 1.05737 0.94571 1.01006 1.22316 1.02270 0.95412 0.94820 1.20486 0.93026 0.95469 0.84532 0.92124 1.22288 0.97323 1.00587 1.01177 1.42490 1.79681 1.09519 1.06733 1.20375 1.39832 0.95385 0.89660 0.90965 1.27138 0.99808 0.97548 1.05184 1.70927 1.54097 1.09594 1.28057 0.82567 0.76166 0.73988 0.71617 1.19200 1.22115 1.22246 0.91620 0.93464 0.93034 0.75568 0.76411 0.81284 0.84031 0.84199 0.82563 0.79463 0.94900 0.90820 0.93610 0.81008 0.94610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.05 9.33 71.98 0.67 -4.38 16 2 C 0.15 5.31 2.21 44.99 0.10 5.41 16 3 H 0.06 2.48 7.58 -2.39 -0.02 2.46 16 4 N -0.70 -19.03 4.38 -447.03 -1.96 -20.99 16 5 C 0.58 17.26 7.68 86.29 0.66 17.92 16 6 O -0.55 -20.88 12.69 -4.52 -0.06 -20.94 16 7 C -0.32 -7.20 6.43 24.11 0.15 -7.04 16 8 S 0.30 3.55 22.13 -56.49 -1.25 2.30 16 9 C -0.19 -1.58 10.90 66.76 0.73 -0.86 16 10 C -0.16 -2.21 9.96 21.18 0.21 -2.00 16 11 C 0.17 3.75 5.99 37.62 0.23 3.98 16 12 N -0.40 -10.47 2.65 -348.77 -0.93 -11.40 16 13 C 0.03 0.87 8.52 83.17 0.71 1.58 16 14 C -0.23 -6.49 10.86 22.16 0.24 -6.25 16 15 C -0.20 -4.95 10.86 22.16 0.24 -4.71 16 16 C -0.02 -0.52 11.24 83.17 0.93 0.42 16 17 C 0.17 6.53 2.52 44.99 0.11 6.64 16 18 H 0.06 2.20 8.08 -2.39 -0.02 2.18 16 19 C -0.15 -5.24 9.33 71.98 0.67 -4.57 16 20 N -0.74 -36.31 4.43 -322.93 -1.43 -37.74 16 21 C -0.32 -17.42 9.93 84.04 0.83 -16.58 16 22 H 0.07 3.77 7.83 -2.91 -0.02 3.74 16 23 C -0.11 -6.06 5.50 84.86 0.47 -5.59 16 24 N -0.98 -61.47 13.70 21.65 0.30 -61.17 16 25 Si 1.13 51.56 29.92 68.60 2.05 53.61 16 26 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 27 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 28 H -0.30 -13.46 7.11 99.48 0.71 -12.75 16 29 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 30 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 31 H 0.05 2.11 7.44 -2.39 -0.02 2.09 16 32 H 0.41 8.58 7.49 -92.71 -0.69 7.88 16 33 H 0.22 0.03 8.06 -2.91 -0.02 0.01 16 34 H 0.17 1.65 8.06 -2.91 -0.02 1.63 16 35 H 0.14 4.59 7.44 -2.91 -0.02 4.57 16 36 H 0.14 3.66 8.06 -2.91 -0.02 3.64 16 37 H 0.16 3.02 8.06 -2.91 -0.02 2.99 16 38 H 0.19 2.99 8.06 -2.91 -0.02 2.97 16 39 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 40 H 0.07 1.93 7.45 -2.38 -0.02 1.91 16 41 H 0.04 1.66 8.14 -2.38 -0.02 1.64 16 42 H 0.36 18.93 6.42 -92.71 -0.59 18.33 16 43 H 0.24 15.37 6.77 -92.71 -0.63 14.74 16 Total: -1.00 -75.73 371.82 3.58 -72.15 By element: Atomic # 1 Polarization: 40.33 SS G_CDS: -0.11 Total: 40.22 kcal Atomic # 6 Polarization: -23.00 SS G_CDS: 6.96 Total: -16.03 kcal Atomic # 7 Polarization: -127.29 SS G_CDS: -4.02 Total: -131.30 kcal Atomic # 8 Polarization: -20.88 SS G_CDS: -0.06 Total: -20.94 kcal Atomic # 14 Polarization: 51.56 SS G_CDS: 2.05 Total: 53.61 kcal Atomic # 16 Polarization: 3.55 SS G_CDS: -1.25 Total: 2.30 kcal Total: -75.73 3.58 -72.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755247053.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.645 kcal (2) G-P(sol) polarization free energy of solvation -75.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.149 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds