Wall clock time and date at job start Tue Mar 31 2020 18:39:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.47043 * 2 1 4 4 N 1.46507 * 109.46881 * 239.99950 * 2 1 3 5 5 C 1.36933 * 119.99871 * 85.00443 * 4 2 1 6 6 H 1.08001 * 120.00003 * 359.97438 * 5 4 2 7 7 C 1.38810 * 120.00146 * 179.97438 * 5 4 2 8 8 N 1.31623 * 119.99655 * 359.97438 * 7 5 4 9 9 Si 1.86794 * 120.00367 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.47058 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47587 * 119.99844 * 9 7 5 12 12 H 1.48507 * 109.47304 * 239.99902 * 9 7 5 13 13 C 1.52995 * 109.47341 * 120.00284 * 2 1 3 14 14 H 1.08998 * 109.47605 * 184.99946 * 13 2 1 15 15 C 1.52999 * 109.47404 * 64.99650 * 13 2 1 16 16 N 1.46506 * 109.46969 * 304.99741 * 13 2 1 17 17 C 1.34774 * 120.00336 * 204.99802 * 16 13 2 18 18 O 1.21757 * 119.99684 * 0.02562 * 17 16 13 19 19 C 1.46112 * 120.00188 * 179.97438 * 17 16 13 20 20 S 1.75819 * 125.47505 * 359.97438 * 19 17 16 21 21 C 1.70574 * 91.67435 * 180.02562 * 20 19 17 22 22 C 1.33580 * 111.17187 * 359.97438 * 21 20 19 23 23 C 1.37346 * 125.48047 * 179.97438 * 19 17 16 24 24 N 1.39880 * 123.48537 * 359.97438 * 23 19 17 25 25 C 1.36612 * 125.67212 * 309.68758 * 24 23 19 26 26 C 1.34844 * 108.19591 * 179.83253 * 25 24 23 27 27 C 1.40971 * 107.47324 * 0.42569 * 26 25 24 28 28 C 1.34835 * 107.47398 * 359.73627 * 27 26 25 29 29 H 1.08991 * 109.47149 * 300.00062 * 1 2 3 30 30 H 1.09001 * 109.47191 * 60.00458 * 1 2 3 31 31 H 1.09007 * 109.47141 * 180.02562 * 1 2 3 32 32 H 0.96997 * 120.00054 * 264.99620 * 4 2 1 33 33 H 0.97000 * 119.99902 * 180.02562 * 8 7 5 34 34 H 1.09005 * 109.47285 * 180.02562 * 15 13 2 35 35 H 1.09003 * 109.47403 * 300.00547 * 15 13 2 36 36 H 1.08995 * 109.46936 * 60.00302 * 15 13 2 37 37 H 0.97010 * 119.99678 * 24.99965 * 16 13 2 38 38 H 1.08002 * 124.41583 * 180.02562 * 21 20 19 39 39 H 1.08006 * 122.45861 * 179.97438 * 22 21 20 40 40 H 1.07997 * 125.89617 * 359.96745 * 25 24 23 41 41 H 1.07994 * 126.25894 * 180.18367 * 26 25 24 42 42 H 1.08005 * 126.25751 * 179.71221 * 27 26 25 43 43 H 1.08008 * 125.89855 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1962 5 6 2.1491 -0.0075 -2.3758 6 1 1.8919 1.0403 -2.4243 7 6 2.6122 -0.6617 -3.5091 8 7 2.9261 -1.9386 -3.4497 9 14 2.7901 0.2700 -5.1183 10 1 2.3741 1.6819 -4.9214 11 1 4.2070 0.2280 -5.5607 12 1 1.9298 -0.3594 -6.1524 13 6 2.0400 -0.7213 1.2491 14 1 3.1263 -0.6444 1.2951 15 6 1.6352 -2.1955 1.1879 16 7 1.4559 -0.1037 2.4424 17 6 2.0913 -0.1938 3.6275 18 8 3.1510 -0.7882 3.7064 19 6 1.5090 0.4226 4.8174 20 16 -0.0063 1.3131 4.8675 21 6 0.1639 1.6069 6.5391 22 6 1.2894 1.0647 7.0122 23 6 2.0572 0.3997 6.0765 24 7 3.2679 -0.2319 6.3797 25 6 3.6038 -1.5131 6.0448 26 6 4.8475 -1.7564 6.5056 27 6 5.2936 -0.5885 7.1568 28 6 4.3086 0.3277 7.0651 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 2.2490 -1.6318 -1.1527 33 1 3.2501 -2.3957 -4.2415 34 1 1.9982 -2.7093 2.0781 35 1 0.5489 -2.2724 1.1420 36 1 2.0698 -2.6550 0.3002 37 1 0.6118 0.3702 2.3793 38 1 -0.5461 2.1587 7.1373 39 1 1.5781 1.1414 8.0501 40 1 2.9816 -2.2097 5.5026 41 1 5.3990 -2.6787 6.3989 42 1 6.2495 -0.4527 7.6411 43 1 4.3373 1.3306 7.4649 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755247054.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:39:26 Heat of formation + Delta-G solvation = 75.575614 kcal Electronic energy + Delta-G solvation = -26018.471350 eV Core-core repulsion = 22385.359170 eV Total energy + Delta-G solvation = -3633.112180 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.55848 -39.70777 -37.96570 -36.81264 -33.98772 -32.09740 -31.91940 -30.11105 -28.95407 -28.46848 -28.25512 -25.19365 -24.41350 -23.34634 -21.62623 -21.28432 -20.32857 -19.48363 -19.07128 -18.71659 -17.50751 -17.18050 -16.17618 -15.43243 -15.18770 -14.94772 -14.70332 -14.39739 -14.24520 -14.04639 -13.74186 -13.50601 -13.37672 -13.09727 -12.83182 -12.59218 -12.46370 -12.25937 -12.05350 -11.92178 -11.68800 -11.51656 -11.33824 -10.97944 -10.86275 -10.53362 -10.28388 -10.02409 -9.97200 -9.69224 -9.59808 -9.24937 -8.98097 -8.87997 -8.30385 -8.01280 -7.03790 -5.81121 -3.10927 -0.00563 0.94136 1.35039 1.68829 2.52998 2.94542 3.08444 3.13489 3.18087 3.41253 3.46944 3.49103 4.43838 4.56211 4.66513 4.75155 5.01185 5.21259 5.29954 5.35508 5.42277 5.44549 5.57501 5.57944 5.60533 5.70189 5.76407 5.77321 6.00925 6.09266 6.23156 6.33845 6.34536 6.35326 6.39749 6.56468 6.66588 6.83975 7.02040 7.03086 7.24279 7.46582 7.51636 7.66538 8.19226 8.37158 9.48667 10.03190 10.38201 11.41455 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.016304 B = 0.002907 C = 0.002610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1716.979979 B = 9631.231138 C =10726.896841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.168 3.832 3 H 0.052 0.948 4 N -0.719 5.719 5 C -0.242 4.242 6 H 0.071 0.929 7 C -0.011 4.011 8 N -0.931 5.931 9 Si 0.908 3.092 10 H -0.280 1.280 11 H -0.291 1.291 12 H -0.291 1.291 13 C 0.138 3.862 14 H 0.091 0.909 15 C -0.159 4.159 16 N -0.712 5.712 17 C 0.580 3.420 18 O -0.511 6.511 19 C -0.274 4.274 20 S 0.248 5.752 21 C -0.222 4.222 22 C -0.149 4.149 23 C 0.181 3.819 24 N -0.390 5.390 25 C 0.053 3.947 26 C -0.210 4.210 27 C -0.186 4.186 28 C -0.024 4.024 29 H 0.030 0.970 30 H 0.059 0.941 31 H 0.054 0.946 32 H 0.387 0.613 33 H 0.256 0.744 34 H 0.051 0.949 35 H 0.056 0.944 36 H 0.078 0.922 37 H 0.394 0.606 38 H 0.178 0.822 39 H 0.152 0.848 40 H 0.158 0.842 41 H 0.136 0.864 42 H 0.136 0.864 43 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.108 6.172 24.119 25.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.057 3.943 3 H 0.070 0.930 4 N -0.362 5.362 5 C -0.373 4.373 6 H 0.089 0.911 7 C -0.208 4.208 8 N -0.579 5.579 9 Si 0.739 3.261 10 H -0.206 1.206 11 H -0.218 1.218 12 H -0.219 1.219 13 C 0.033 3.967 14 H 0.109 0.891 15 C -0.217 4.217 16 N -0.365 5.365 17 C 0.364 3.636 18 O -0.388 6.388 19 C -0.397 4.397 20 S 0.515 5.485 21 C -0.360 4.360 22 C -0.181 4.181 23 C 0.074 3.926 24 N -0.065 5.065 25 C -0.075 4.075 26 C -0.234 4.234 27 C -0.211 4.211 28 C -0.150 4.150 29 H 0.049 0.951 30 H 0.078 0.922 31 H 0.073 0.927 32 H 0.223 0.777 33 H 0.066 0.934 34 H 0.070 0.930 35 H 0.075 0.925 36 H 0.097 0.903 37 H 0.229 0.771 38 H 0.195 0.805 39 H 0.169 0.831 40 H 0.175 0.825 41 H 0.154 0.846 42 H 0.154 0.846 43 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -7.700 6.395 22.838 24.935 hybrid contribution 0.751 0.156 0.173 0.786 sum -6.949 6.550 23.012 24.914 Atomic orbital electron populations 1.22550 0.99334 1.01340 0.99710 1.20357 0.92193 0.95631 0.86132 0.93015 1.42448 1.78211 1.10788 1.04763 1.19262 1.36925 0.93990 0.87092 0.91059 1.24748 1.01873 0.96002 0.98127 1.69668 1.50581 1.08678 1.28925 0.86113 0.77366 0.78764 0.83888 1.20554 1.21808 1.21859 1.21399 0.99174 0.92932 0.83146 0.89074 1.22141 1.01535 0.95590 1.02436 1.46155 1.25388 1.56651 1.08283 1.16740 0.84680 0.80262 0.81880 1.90929 1.21098 1.42176 1.84559 1.24765 1.04040 1.13358 0.97503 1.83170 1.16253 1.45909 1.03181 1.25079 1.02826 1.07084 1.01034 1.19767 0.94904 1.02296 1.01150 1.16970 0.87623 0.97191 0.90817 1.40896 1.10315 1.11218 1.44059 1.21760 0.98142 0.85131 1.02430 1.20858 0.95779 0.99969 1.06790 1.20887 0.99401 0.94328 1.06442 1.21765 0.88573 0.99865 1.04756 0.95103 0.92187 0.92681 0.77732 0.93446 0.93032 0.92505 0.90285 0.77059 0.80489 0.83065 0.82490 0.84587 0.84621 0.82451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.77 9.01 37.16 0.33 -2.43 16 2 C 0.17 3.19 2.93 -67.93 -0.20 2.99 16 3 H 0.05 1.02 8.08 -51.93 -0.42 0.60 16 4 N -0.72 -17.41 5.03 -53.43 -0.27 -17.68 16 5 C -0.24 -6.55 9.93 -15.06 -0.15 -6.70 16 6 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 7 C -0.01 -0.32 5.50 -17.43 -0.10 -0.41 16 8 N -0.93 -27.70 13.06 55.49 0.72 -26.98 16 9 Si 0.91 22.13 29.55 -169.99 -5.02 17.11 16 10 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 12 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 13 C 0.14 2.36 2.62 -67.93 -0.18 2.18 16 14 H 0.09 1.81 7.58 -51.93 -0.39 1.41 16 15 C -0.16 -2.64 9.00 37.16 0.33 -2.31 16 16 N -0.71 -10.09 4.98 -55.29 -0.28 -10.37 16 17 C 0.58 8.74 7.68 -13.10 -0.10 8.64 16 18 O -0.51 -9.34 12.68 5.14 0.07 -9.28 16 19 C -0.27 -3.32 6.43 -36.75 -0.24 -3.56 16 20 S 0.25 1.94 22.13 -107.50 -2.38 -0.44 16 21 C -0.22 -1.47 10.90 29.10 0.32 -1.15 16 22 C -0.15 -1.28 9.97 -41.26 -0.41 -1.69 16 23 C 0.18 2.16 5.99 -84.56 -0.51 1.65 16 24 N -0.39 -5.25 2.65 -61.59 -0.16 -5.42 16 25 C 0.05 0.76 8.52 -16.63 -0.14 0.62 16 26 C -0.21 -2.90 10.86 -39.75 -0.43 -3.33 16 27 C -0.19 -2.34 10.86 -39.75 -0.43 -2.77 16 28 C -0.02 -0.29 11.24 -16.63 -0.19 -0.48 16 29 H 0.03 0.39 6.29 -51.93 -0.33 0.06 16 30 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 31 H 0.05 0.91 6.56 -51.93 -0.34 0.57 16 32 H 0.39 9.90 5.77 -40.82 -0.24 9.67 16 33 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 34 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 35 H 0.06 0.87 6.56 -51.93 -0.34 0.53 16 36 H 0.08 1.47 6.29 -51.93 -0.33 1.15 16 37 H 0.39 4.68 5.68 -40.82 -0.23 4.44 16 38 H 0.18 0.62 8.06 -52.49 -0.42 0.20 16 39 H 0.15 1.04 8.06 -52.48 -0.42 0.61 16 40 H 0.16 2.28 7.43 -52.49 -0.39 1.89 16 41 H 0.14 1.66 8.06 -52.49 -0.42 1.24 16 42 H 0.14 1.40 8.06 -52.48 -0.42 0.97 16 43 H 0.16 1.49 8.06 -52.48 -0.42 1.07 16 LS Contribution 365.83 15.07 5.51 5.51 Total: -1.00 -32.64 365.83 -9.40 -42.04 By element: Atomic # 1 Polarization: 19.76 SS G_CDS: -5.51 Total: 14.25 kcal Atomic # 6 Polarization: -6.66 SS G_CDS: -2.08 Total: -8.75 kcal Atomic # 7 Polarization: -60.46 SS G_CDS: 0.02 Total: -60.44 kcal Atomic # 8 Polarization: -9.34 SS G_CDS: 0.07 Total: -9.28 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Atomic # 16 Polarization: 1.94 SS G_CDS: -2.38 Total: -0.44 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -32.64 -9.40 -42.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755247054.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.613 kcal (2) G-P(sol) polarization free energy of solvation -32.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.038 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds