Wall clock time and date at job start Tue Mar 31 2020 18:39:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.47043 * 2 1 4 4 N 1.46507 * 109.46881 * 239.99950 * 2 1 3 5 5 C 1.36933 * 119.99871 * 85.00443 * 4 2 1 6 6 H 1.08001 * 120.00003 * 359.97438 * 5 4 2 7 7 C 1.38810 * 120.00146 * 179.97438 * 5 4 2 8 8 N 1.31623 * 119.99655 * 359.97438 * 7 5 4 9 9 Si 1.86794 * 120.00367 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.47058 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47587 * 119.99844 * 9 7 5 12 12 H 1.48507 * 109.47304 * 239.99902 * 9 7 5 13 13 C 1.52995 * 109.47341 * 120.00284 * 2 1 3 14 14 H 1.08998 * 109.47605 * 184.99946 * 13 2 1 15 15 C 1.52999 * 109.47404 * 64.99650 * 13 2 1 16 16 N 1.46506 * 109.46969 * 304.99741 * 13 2 1 17 17 C 1.34774 * 120.00336 * 204.99802 * 16 13 2 18 18 O 1.21757 * 119.99684 * 0.02562 * 17 16 13 19 19 C 1.46112 * 120.00188 * 179.97438 * 17 16 13 20 20 S 1.75819 * 125.47505 * 359.97438 * 19 17 16 21 21 C 1.70574 * 91.67435 * 180.02562 * 20 19 17 22 22 C 1.33580 * 111.17187 * 359.97438 * 21 20 19 23 23 C 1.37346 * 125.48047 * 179.97438 * 19 17 16 24 24 N 1.39880 * 123.48537 * 359.97438 * 23 19 17 25 25 C 1.36612 * 125.67212 * 309.68758 * 24 23 19 26 26 C 1.34844 * 108.19591 * 179.83253 * 25 24 23 27 27 C 1.40971 * 107.47324 * 0.42569 * 26 25 24 28 28 C 1.34835 * 107.47398 * 359.73627 * 27 26 25 29 29 H 1.08991 * 109.47149 * 300.00062 * 1 2 3 30 30 H 1.09001 * 109.47191 * 60.00458 * 1 2 3 31 31 H 1.09007 * 109.47141 * 180.02562 * 1 2 3 32 32 H 0.96997 * 120.00054 * 264.99620 * 4 2 1 33 33 H 0.97000 * 119.99902 * 180.02562 * 8 7 5 34 34 H 1.09005 * 109.47285 * 180.02562 * 15 13 2 35 35 H 1.09003 * 109.47403 * 300.00547 * 15 13 2 36 36 H 1.08995 * 109.46936 * 60.00302 * 15 13 2 37 37 H 0.97010 * 119.99678 * 24.99965 * 16 13 2 38 38 H 1.08002 * 124.41583 * 180.02562 * 21 20 19 39 39 H 1.08006 * 122.45861 * 179.97438 * 22 21 20 40 40 H 1.07997 * 125.89617 * 359.96745 * 25 24 23 41 41 H 1.07994 * 126.25894 * 180.18367 * 26 25 24 42 42 H 1.08005 * 126.25751 * 179.71221 * 27 26 25 43 43 H 1.08008 * 125.89855 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1962 5 6 2.1491 -0.0075 -2.3758 6 1 1.8919 1.0403 -2.4243 7 6 2.6122 -0.6617 -3.5091 8 7 2.9261 -1.9386 -3.4497 9 14 2.7901 0.2700 -5.1183 10 1 2.3741 1.6819 -4.9214 11 1 4.2070 0.2280 -5.5607 12 1 1.9298 -0.3594 -6.1524 13 6 2.0400 -0.7213 1.2491 14 1 3.1263 -0.6444 1.2951 15 6 1.6352 -2.1955 1.1879 16 7 1.4559 -0.1037 2.4424 17 6 2.0913 -0.1938 3.6275 18 8 3.1510 -0.7882 3.7064 19 6 1.5090 0.4226 4.8174 20 16 -0.0063 1.3131 4.8675 21 6 0.1639 1.6069 6.5391 22 6 1.2894 1.0647 7.0122 23 6 2.0572 0.3997 6.0765 24 7 3.2679 -0.2319 6.3797 25 6 3.6038 -1.5131 6.0448 26 6 4.8475 -1.7564 6.5056 27 6 5.2936 -0.5885 7.1568 28 6 4.3086 0.3277 7.0651 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 2.2490 -1.6318 -1.1527 33 1 3.2501 -2.3957 -4.2415 34 1 1.9982 -2.7093 2.0781 35 1 0.5489 -2.2724 1.1420 36 1 2.0698 -2.6550 0.3002 37 1 0.6118 0.3702 2.3793 38 1 -0.5461 2.1587 7.1373 39 1 1.5781 1.1414 8.0501 40 1 2.9816 -2.2097 5.5026 41 1 5.3990 -2.6787 6.3989 42 1 6.2495 -0.4527 7.6411 43 1 4.3373 1.3306 7.4649 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755247054.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:39:25 Heat of formation + Delta-G solvation = 55.695457 kcal Electronic energy + Delta-G solvation = -26019.333418 eV Core-core repulsion = 22385.359170 eV Total energy + Delta-G solvation = -3633.974248 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.49658 -40.92314 -38.89339 -38.16350 -35.65428 -33.68822 -32.88889 -31.53573 -30.09674 -29.82650 -29.46103 -26.24454 -26.02759 -24.83451 -22.68253 -22.26270 -21.29043 -20.83225 -20.02606 -19.91011 -19.34197 -18.14043 -17.21322 -16.71537 -16.61781 -16.17036 -15.90310 -15.65098 -15.48518 -15.21983 -15.06577 -14.74136 -14.56207 -14.23291 -14.06316 -13.78724 -13.50437 -13.33435 -13.18226 -13.13407 -13.02295 -12.94635 -12.83864 -12.68986 -12.15609 -12.08527 -12.06456 -11.69387 -11.64173 -11.16682 -10.98259 -10.41687 -10.27424 -9.85596 -9.15010 -9.05155 -9.01968 -7.94737 -5.23919 -0.79285 0.23160 0.71043 0.95971 1.47613 1.48687 1.57416 1.58264 1.93998 2.01544 2.09653 2.15992 2.57160 3.39228 3.62059 3.84236 3.90226 3.93956 4.00335 4.03910 4.26878 4.29424 4.33594 4.53009 4.55822 4.64617 4.66844 4.76872 4.82409 4.90953 4.91587 4.96921 5.01760 5.16224 5.20338 5.34678 5.38205 5.41807 5.52551 5.59982 6.04536 6.25119 6.27217 6.38199 6.54389 7.06528 7.33968 8.07158 8.30687 9.28987 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.016304 B = 0.002907 C = 0.002610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1716.979979 B = 9631.231138 C =10726.896841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.165 3.835 3 H 0.046 0.954 4 N -0.733 5.733 5 C -0.238 4.238 6 H 0.078 0.922 7 C -0.075 4.075 8 N -0.969 5.969 9 Si 0.972 3.028 10 H -0.264 1.264 11 H -0.297 1.297 12 H -0.293 1.293 13 C 0.153 3.847 14 H 0.057 0.943 15 C -0.148 4.148 16 N -0.702 5.702 17 C 0.577 3.423 18 O -0.553 6.553 19 C -0.320 4.320 20 S 0.304 5.696 21 C -0.193 4.193 22 C -0.163 4.163 23 C 0.169 3.831 24 N -0.396 5.396 25 C 0.030 3.970 26 C -0.227 4.227 27 C -0.201 4.201 28 C -0.023 4.023 29 H 0.074 0.926 30 H 0.047 0.953 31 H 0.054 0.946 32 H 0.376 0.624 33 H 0.250 0.750 34 H 0.050 0.950 35 H 0.074 0.926 36 H 0.054 0.946 37 H 0.407 0.593 38 H 0.219 0.781 39 H 0.170 0.830 40 H 0.144 0.856 41 H 0.141 0.859 42 H 0.156 0.844 43 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.556 8.967 26.092 29.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.056 3.944 3 H 0.064 0.936 4 N -0.376 5.376 5 C -0.370 4.370 6 H 0.096 0.904 7 C -0.267 4.267 8 N -0.620 5.620 9 Si 0.801 3.199 10 H -0.188 1.188 11 H -0.225 1.225 12 H -0.221 1.221 13 C 0.048 3.952 14 H 0.075 0.925 15 C -0.207 4.207 16 N -0.355 5.355 17 C 0.365 3.635 18 O -0.433 6.433 19 C -0.442 4.442 20 S 0.572 5.428 21 C -0.331 4.331 22 C -0.194 4.194 23 C 0.061 3.939 24 N -0.070 5.070 25 C -0.098 4.098 26 C -0.251 4.251 27 C -0.226 4.226 28 C -0.149 4.149 29 H 0.092 0.908 30 H 0.066 0.934 31 H 0.073 0.927 32 H 0.211 0.789 33 H 0.059 0.941 34 H 0.070 0.930 35 H 0.093 0.907 36 H 0.073 0.927 37 H 0.245 0.755 38 H 0.236 0.764 39 H 0.187 0.813 40 H 0.162 0.838 41 H 0.159 0.841 42 H 0.174 0.826 43 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -10.213 9.251 24.848 28.413 hybrid contribution 1.437 -0.627 -0.300 1.596 sum -8.776 8.624 24.548 27.459 Atomic orbital electron populations 1.22369 0.96402 1.01826 1.01255 1.20524 0.94054 0.94814 0.84979 0.93566 1.42647 1.78659 1.10534 1.05749 1.19648 1.35005 0.94319 0.88008 0.90368 1.25543 1.02838 0.96888 1.01474 1.69825 1.52505 1.10263 1.29399 0.85093 0.76622 0.78294 0.79862 1.18850 1.22476 1.22057 1.20917 0.97331 0.93238 0.83759 0.92468 1.22020 1.02392 0.95075 1.01181 1.45869 1.25761 1.56671 1.07237 1.17172 0.84134 0.79572 0.82651 1.90908 1.23053 1.44036 1.85301 1.24574 1.07163 1.16145 0.96297 1.82950 1.12546 1.43522 1.03793 1.25621 1.02147 1.04712 1.00649 1.19879 0.95247 1.02778 1.01495 1.17479 0.87385 0.97387 0.91666 1.41067 1.11317 1.10861 1.43804 1.21697 0.98587 0.86107 1.03412 1.21132 0.95889 1.00935 1.07132 1.21204 1.00577 0.93952 1.06849 1.22305 0.87985 1.00861 1.03775 0.90773 0.93392 0.92740 0.78928 0.94068 0.93046 0.90705 0.92723 0.75470 0.76390 0.81294 0.83809 0.84133 0.82629 0.79554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.89 9.01 71.98 0.65 -4.24 16 2 C 0.17 6.27 2.93 44.99 0.13 6.40 16 3 H 0.05 1.81 8.08 -2.39 -0.02 1.79 16 4 N -0.73 -36.24 5.03 -322.94 -1.63 -37.86 16 5 C -0.24 -12.99 9.93 84.03 0.83 -12.15 16 6 H 0.08 4.07 7.83 -2.91 -0.02 4.05 16 7 C -0.08 -4.29 5.50 84.86 0.47 -3.82 16 8 N -0.97 -59.33 13.06 21.65 0.28 -59.05 16 9 Si 0.97 45.97 29.55 68.60 2.03 48.00 16 10 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 11 H -0.30 -14.25 7.11 99.48 0.71 -13.54 16 12 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 13 C 0.15 5.36 2.62 44.99 0.12 5.47 16 14 H 0.06 2.40 7.58 -2.39 -0.02 2.39 16 15 C -0.15 -5.08 9.00 71.98 0.65 -4.43 16 16 N -0.70 -19.46 4.98 -447.03 -2.23 -21.69 16 17 C 0.58 17.54 7.68 86.29 0.66 18.20 16 18 O -0.55 -21.28 12.68 -4.53 -0.06 -21.33 16 19 C -0.32 -7.33 6.43 24.10 0.15 -7.17 16 20 S 0.30 3.61 22.13 -56.49 -1.25 2.36 16 21 C -0.19 -1.62 10.90 66.76 0.73 -0.89 16 22 C -0.16 -2.25 9.97 21.18 0.21 -2.04 16 23 C 0.17 3.80 5.99 37.61 0.23 4.02 16 24 N -0.40 -10.63 2.65 -348.77 -0.93 -11.55 16 25 C 0.03 0.91 8.52 83.17 0.71 1.62 16 26 C -0.23 -6.54 10.86 22.16 0.24 -6.30 16 27 C -0.20 -5.05 10.86 22.16 0.24 -4.81 16 28 C -0.02 -0.55 11.24 83.17 0.94 0.38 16 29 H 0.07 1.62 6.29 -2.39 -0.02 1.61 16 30 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.05 1.70 6.56 -2.38 -0.02 1.68 16 32 H 0.38 20.04 5.77 -92.71 -0.54 19.50 16 33 H 0.25 14.90 8.31 -92.71 -0.77 14.12 16 34 H 0.05 1.74 8.14 -2.38 -0.02 1.72 16 35 H 0.07 2.25 6.56 -2.39 -0.02 2.24 16 36 H 0.05 2.15 6.29 -2.39 -0.02 2.13 16 37 H 0.41 8.74 5.68 -92.70 -0.53 8.22 16 38 H 0.22 0.05 8.06 -2.91 -0.02 0.03 16 39 H 0.17 1.69 8.06 -2.91 -0.02 1.66 16 40 H 0.14 4.59 7.43 -2.91 -0.02 4.57 16 41 H 0.14 3.68 8.06 -2.91 -0.02 3.65 16 42 H 0.16 3.08 8.06 -2.91 -0.02 3.06 16 43 H 0.19 3.10 8.06 -2.91 -0.02 3.08 16 Total: -1.00 -74.58 365.83 3.17 -71.41 By element: Atomic # 1 Polarization: 39.48 SS G_CDS: -0.01 Total: 39.47 kcal Atomic # 6 Polarization: -16.71 SS G_CDS: 6.95 Total: -9.76 kcal Atomic # 7 Polarization: -125.65 SS G_CDS: -4.50 Total: -130.15 kcal Atomic # 8 Polarization: -21.28 SS G_CDS: -0.06 Total: -21.33 kcal Atomic # 14 Polarization: 45.97 SS G_CDS: 2.03 Total: 48.00 kcal Atomic # 16 Polarization: 3.61 SS G_CDS: -1.25 Total: 2.36 kcal Total: -74.58 3.17 -71.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755247054.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.106 kcal (2) G-P(sol) polarization free energy of solvation -74.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.410 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds