Wall clock time and date at job start Tue Mar 31 2020 18:39:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47487 * 2 1 4 4 N 1.46501 * 109.47450 * 120.00415 * 2 1 3 5 5 C 1.36934 * 119.99895 * 274.99966 * 4 2 1 6 6 H 1.08004 * 119.99641 * 359.97438 * 5 4 2 7 7 C 1.38806 * 120.00031 * 179.97438 * 5 4 2 8 8 N 1.31621 * 120.00227 * 0.02562 * 7 5 4 9 9 Si 1.86807 * 119.99995 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.46818 * 89.99975 * 9 7 5 11 11 H 1.48504 * 109.46941 * 209.99897 * 9 7 5 12 12 H 1.48492 * 109.47100 * 329.99976 * 9 7 5 13 13 C 1.53002 * 109.46848 * 240.00462 * 2 1 3 14 14 H 1.08997 * 109.47140 * 175.00066 * 13 2 1 15 15 C 1.53008 * 109.46877 * 294.99582 * 13 2 1 16 16 N 1.46503 * 109.47372 * 54.99653 * 13 2 1 17 17 C 1.34776 * 119.99644 * 155.00223 * 16 13 2 18 18 O 1.21753 * 120.00587 * 359.97438 * 17 16 13 19 19 C 1.46112 * 119.99411 * 180.02562 * 17 16 13 20 20 S 1.75809 * 125.48133 * 359.97438 * 19 17 16 21 21 C 1.70566 * 91.67714 * 180.02562 * 20 19 17 22 22 C 1.33583 * 111.17407 * 359.74963 * 21 20 19 23 23 C 1.37355 * 125.47669 * 179.97438 * 19 17 16 24 24 N 1.39885 * 123.48562 * 359.95414 * 23 19 17 25 25 C 1.36600 * 125.67236 * 309.69636 * 24 23 19 26 26 C 1.34838 * 108.19771 * 179.82983 * 25 24 23 27 27 C 1.40969 * 107.47250 * 0.42520 * 26 25 24 28 28 C 1.34838 * 107.47498 * 359.73282 * 27 26 25 29 29 H 1.08999 * 109.47487 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.46818 * 299.99853 * 1 2 3 31 31 H 1.08997 * 109.47595 * 59.99323 * 1 2 3 32 32 H 0.96998 * 119.99760 * 94.99710 * 4 2 1 33 33 H 0.97001 * 120.00403 * 180.02562 * 8 7 5 34 34 H 1.09001 * 109.47177 * 179.97438 * 15 13 2 35 35 H 1.08994 * 109.47130 * 300.00094 * 15 13 2 36 36 H 1.08997 * 109.46840 * 60.00300 * 15 13 2 37 37 H 0.96999 * 119.99870 * 335.00381 * 16 13 2 38 38 H 1.08001 * 124.41336 * 179.97438 * 21 20 19 39 39 H 1.07998 * 122.46120 * 180.23641 * 22 21 20 40 40 H 1.07998 * 125.90506 * 359.95528 * 25 24 23 41 41 H 1.08004 * 126.26810 * 180.18783 * 26 25 24 42 42 H 1.08006 * 126.26054 * 179.69978 * 27 26 25 43 43 H 1.07999 * 125.90271 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.1492 -0.0076 2.3757 6 1 1.8927 1.0404 2.4241 7 6 2.6115 -0.6621 3.5091 8 7 2.9245 -1.9392 3.4500 9 14 2.7906 0.2699 5.1181 10 1 1.5228 0.1797 5.8861 11 1 3.8948 -0.3241 5.9139 12 1 3.0965 1.6948 4.8334 13 6 2.0399 -0.7212 -1.2493 14 1 3.1262 -0.6443 -1.2953 15 6 1.6352 -2.1955 -1.1881 16 7 1.4557 -0.1035 -2.4425 17 6 2.0911 -0.1937 -3.6276 18 8 3.1508 -0.7880 -3.7067 19 6 1.5086 0.4228 -4.8174 20 16 -0.0072 1.3120 -4.8678 21 6 0.1626 1.6053 -6.5395 22 6 1.2913 1.0689 -7.0113 23 6 2.0573 0.4007 -6.0764 24 7 3.2693 -0.2287 -6.3792 25 6 4.4450 -0.0599 -5.7043 26 6 5.3813 -0.8338 -6.2895 27 6 4.7664 -1.4978 -7.3704 28 6 3.4755 -1.1099 -7.4024 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 2.2490 -1.6318 1.1524 33 1 3.2472 -2.3967 4.2421 34 1 1.9980 -2.7092 -2.0783 35 1 2.0698 -2.6550 -0.3004 36 1 0.5489 -2.2724 -1.1421 37 1 0.6116 0.3703 -2.3794 38 1 -0.5480 2.1563 -7.1377 39 1 1.5820 1.1491 -8.0483 40 1 4.5976 0.5810 -4.8485 41 1 6.4144 -0.9251 -5.9880 42 1 5.2425 -2.1902 -8.0490 43 1 2.7329 -1.4386 -8.1144 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755247055.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:39:31 Heat of formation + Delta-G solvation = 75.633855 kcal Electronic energy + Delta-G solvation = -26016.369557 eV Core-core repulsion = 22383.259902 eV Total energy + Delta-G solvation = -3633.109654 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.55764 -39.70777 -37.96475 -36.81220 -33.98788 -32.09625 -31.91880 -30.10977 -28.94183 -28.47287 -28.25233 -25.19144 -24.41165 -23.34544 -21.62663 -21.28070 -20.32529 -19.48652 -19.06391 -18.71319 -17.51760 -17.18150 -16.17044 -15.43506 -15.14397 -14.97360 -14.67072 -14.44906 -14.18920 -14.07724 -13.80812 -13.49630 -13.36858 -12.98848 -12.87603 -12.58985 -12.46794 -12.25701 -12.03207 -11.95192 -11.67399 -11.51528 -11.33803 -10.96493 -10.86239 -10.52142 -10.29657 -10.03490 -9.98757 -9.68817 -9.59630 -9.24830 -8.97618 -8.87876 -8.30534 -8.00947 -7.03964 -5.80931 -3.10911 -0.00518 0.94184 1.35052 1.69052 2.52940 2.94607 3.09090 3.13121 3.18154 3.41304 3.46695 3.48395 4.43968 4.56151 4.66502 4.75153 5.01070 5.21219 5.30606 5.36089 5.42218 5.44868 5.57855 5.58374 5.60531 5.70204 5.76673 5.77947 6.01580 6.09748 6.23769 6.34227 6.34812 6.35807 6.40160 6.57431 6.66628 6.84166 7.02219 7.03359 7.24553 7.46802 7.51703 7.65819 8.19223 8.37256 9.48664 10.03259 10.38229 11.41539 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.016534 B = 0.002907 C = 0.002604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1693.061091 B = 9629.953218 C =10751.299281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.168 3.832 3 H 0.052 0.948 4 N -0.719 5.719 5 C -0.242 4.242 6 H 0.071 0.929 7 C -0.011 4.011 8 N -0.931 5.931 9 Si 0.908 3.092 10 H -0.290 1.290 11 H -0.291 1.291 12 H -0.282 1.282 13 C 0.138 3.862 14 H 0.091 0.909 15 C -0.159 4.159 16 N -0.712 5.712 17 C 0.580 3.420 18 O -0.511 6.511 19 C -0.274 4.274 20 S 0.248 5.752 21 C -0.222 4.222 22 C -0.149 4.149 23 C 0.181 3.819 24 N -0.390 5.390 25 C 0.053 3.947 26 C -0.210 4.210 27 C -0.186 4.186 28 C -0.025 4.025 29 H 0.054 0.946 30 H 0.059 0.941 31 H 0.030 0.970 32 H 0.387 0.613 33 H 0.256 0.744 34 H 0.051 0.949 35 H 0.078 0.922 36 H 0.056 0.944 37 H 0.394 0.606 38 H 0.178 0.822 39 H 0.152 0.848 40 H 0.158 0.842 41 H 0.136 0.864 42 H 0.136 0.864 43 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.810 6.609 -23.980 25.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.057 3.943 3 H 0.070 0.930 4 N -0.362 5.362 5 C -0.373 4.373 6 H 0.089 0.911 7 C -0.207 4.207 8 N -0.579 5.579 9 Si 0.739 3.261 10 H -0.217 1.217 11 H -0.217 1.217 12 H -0.207 1.207 13 C 0.034 3.966 14 H 0.109 0.891 15 C -0.217 4.217 16 N -0.365 5.365 17 C 0.364 3.636 18 O -0.388 6.388 19 C -0.397 4.397 20 S 0.515 5.485 21 C -0.360 4.360 22 C -0.181 4.181 23 C 0.074 3.926 24 N -0.065 5.065 25 C -0.074 4.074 26 C -0.234 4.234 27 C -0.211 4.211 28 C -0.150 4.150 29 H 0.073 0.927 30 H 0.078 0.922 31 H 0.049 0.951 32 H 0.223 0.777 33 H 0.066 0.934 34 H 0.070 0.930 35 H 0.097 0.903 36 H 0.075 0.925 37 H 0.229 0.771 38 H 0.195 0.805 39 H 0.169 0.831 40 H 0.176 0.824 41 H 0.154 0.846 42 H 0.154 0.846 43 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -7.395 6.815 -22.701 24.829 hybrid contribution 0.640 0.004 -0.213 0.675 sum -6.755 6.819 -22.914 24.843 Atomic orbital electron populations 1.22554 0.99361 1.01348 0.99702 1.20356 0.92181 0.95613 0.86130 0.92993 1.42443 1.78208 1.10800 1.04753 1.19212 1.37072 0.93955 0.87105 0.91112 1.24746 1.01851 0.95995 0.98113 1.69656 1.50549 1.08670 1.28985 0.86185 0.77306 0.78816 0.83822 1.21718 1.21731 1.20737 1.21399 0.99137 0.92939 0.83137 0.89058 1.22143 1.01526 0.95636 1.02445 1.46154 1.25453 1.56626 1.08246 1.16740 0.84737 0.80276 0.81804 1.90928 1.21218 1.42121 1.84494 1.24771 1.02807 1.13432 0.98660 1.83166 1.15828 1.46506 1.02988 1.25079 1.02684 1.07229 1.01048 1.19766 0.95558 1.01233 1.01552 1.16971 0.87674 0.96392 0.91575 1.40896 1.05597 1.34518 1.25475 1.21781 0.83251 1.03956 0.98428 1.20862 0.99616 1.02929 1.00010 1.20887 0.93708 1.04822 1.01637 1.21757 0.98507 0.99146 0.95622 0.92694 0.92186 0.95105 0.77726 0.93386 0.93026 0.90296 0.92532 0.77057 0.80491 0.83069 0.82430 0.84573 0.84638 0.82475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.78 9.01 37.16 0.33 -2.44 16 2 C 0.17 3.18 2.93 -67.93 -0.20 2.98 16 3 H 0.05 1.01 8.08 -51.93 -0.42 0.59 16 4 N -0.72 -17.37 5.03 -53.43 -0.27 -17.64 16 5 C -0.24 -6.55 9.93 -15.06 -0.15 -6.70 16 6 H 0.07 1.85 7.83 -52.48 -0.41 1.44 16 7 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 8 N -0.93 -27.69 13.06 55.49 0.72 -26.96 16 9 Si 0.91 22.07 29.55 -169.99 -5.02 17.04 16 10 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 11 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 12 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 13 C 0.14 2.37 2.62 -67.92 -0.18 2.19 16 14 H 0.09 1.78 7.58 -51.93 -0.39 1.39 16 15 C -0.16 -2.72 9.00 37.16 0.33 -2.38 16 16 N -0.71 -10.09 4.98 -55.28 -0.28 -10.37 16 17 C 0.58 8.74 7.68 -13.10 -0.10 8.64 16 18 O -0.51 -9.34 12.68 5.14 0.07 -9.27 16 19 C -0.27 -3.32 6.43 -36.75 -0.24 -3.56 16 20 S 0.25 1.94 22.13 -107.50 -2.38 -0.44 16 21 C -0.22 -1.47 10.90 29.10 0.32 -1.16 16 22 C -0.15 -1.28 9.97 -41.26 -0.41 -1.69 16 23 C 0.18 2.16 5.99 -84.55 -0.51 1.65 16 24 N -0.39 -5.25 2.65 -61.59 -0.16 -5.42 16 25 C 0.05 0.78 8.52 -16.63 -0.14 0.64 16 26 C -0.21 -2.92 10.86 -39.75 -0.43 -3.35 16 27 C -0.19 -2.33 10.86 -39.75 -0.43 -2.76 16 28 C -0.02 -0.30 11.25 -16.63 -0.19 -0.49 16 29 H 0.05 0.91 6.56 -51.93 -0.34 0.57 16 30 H 0.06 1.06 8.14 -51.92 -0.42 0.64 16 31 H 0.03 0.39 6.29 -51.93 -0.33 0.06 16 32 H 0.39 9.91 5.77 -40.82 -0.24 9.68 16 33 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 34 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.08 1.49 6.29 -51.93 -0.33 1.17 16 36 H 0.06 0.89 6.56 -51.93 -0.34 0.55 16 37 H 0.39 4.68 5.68 -40.82 -0.23 4.44 16 38 H 0.18 0.62 8.06 -52.49 -0.42 0.20 16 39 H 0.15 1.04 8.06 -52.49 -0.42 0.62 16 40 H 0.16 2.35 7.43 -52.49 -0.39 1.96 16 41 H 0.14 1.68 8.06 -52.48 -0.42 1.26 16 42 H 0.14 1.38 8.06 -52.48 -0.42 0.96 16 43 H 0.16 1.46 8.06 -52.49 -0.42 1.04 16 LS Contribution 365.82 15.07 5.51 5.51 Total: -1.00 -32.51 365.82 -9.40 -41.91 By element: Atomic # 1 Polarization: 19.96 SS G_CDS: -5.51 Total: 14.45 kcal Atomic # 6 Polarization: -6.74 SS G_CDS: -2.08 Total: -8.82 kcal Atomic # 7 Polarization: -60.41 SS G_CDS: 0.02 Total: -60.39 kcal Atomic # 8 Polarization: -9.34 SS G_CDS: 0.07 Total: -9.27 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.04 kcal Atomic # 16 Polarization: 1.94 SS G_CDS: -2.38 Total: -0.44 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -32.51 -9.40 -41.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755247055.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.544 kcal (2) G-P(sol) polarization free energy of solvation -32.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.910 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds