Wall clock time and date at job start Tue Mar 31 2020 18:39:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47487 * 2 1 4 4 N 1.46501 * 109.47450 * 120.00415 * 2 1 3 5 5 C 1.36934 * 119.99895 * 274.99966 * 4 2 1 6 6 H 1.08004 * 119.99641 * 359.97438 * 5 4 2 7 7 C 1.38806 * 120.00031 * 179.97438 * 5 4 2 8 8 N 1.31621 * 120.00227 * 0.02562 * 7 5 4 9 9 Si 1.86807 * 119.99995 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.46818 * 89.99975 * 9 7 5 11 11 H 1.48504 * 109.46941 * 209.99897 * 9 7 5 12 12 H 1.48492 * 109.47100 * 329.99976 * 9 7 5 13 13 C 1.53002 * 109.46848 * 240.00462 * 2 1 3 14 14 H 1.08997 * 109.47140 * 175.00066 * 13 2 1 15 15 C 1.53008 * 109.46877 * 294.99582 * 13 2 1 16 16 N 1.46503 * 109.47372 * 54.99653 * 13 2 1 17 17 C 1.34776 * 119.99644 * 155.00223 * 16 13 2 18 18 O 1.21753 * 120.00587 * 359.97438 * 17 16 13 19 19 C 1.46112 * 119.99411 * 180.02562 * 17 16 13 20 20 S 1.75809 * 125.48133 * 359.97438 * 19 17 16 21 21 C 1.70566 * 91.67714 * 180.02562 * 20 19 17 22 22 C 1.33583 * 111.17407 * 359.74963 * 21 20 19 23 23 C 1.37355 * 125.47669 * 179.97438 * 19 17 16 24 24 N 1.39885 * 123.48562 * 359.95414 * 23 19 17 25 25 C 1.36600 * 125.67236 * 309.69636 * 24 23 19 26 26 C 1.34838 * 108.19771 * 179.82983 * 25 24 23 27 27 C 1.40969 * 107.47250 * 0.42520 * 26 25 24 28 28 C 1.34838 * 107.47498 * 359.73282 * 27 26 25 29 29 H 1.08999 * 109.47487 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.46818 * 299.99853 * 1 2 3 31 31 H 1.08997 * 109.47595 * 59.99323 * 1 2 3 32 32 H 0.96998 * 119.99760 * 94.99710 * 4 2 1 33 33 H 0.97001 * 120.00403 * 180.02562 * 8 7 5 34 34 H 1.09001 * 109.47177 * 179.97438 * 15 13 2 35 35 H 1.08994 * 109.47130 * 300.00094 * 15 13 2 36 36 H 1.08997 * 109.46840 * 60.00300 * 15 13 2 37 37 H 0.96999 * 119.99870 * 335.00381 * 16 13 2 38 38 H 1.08001 * 124.41336 * 179.97438 * 21 20 19 39 39 H 1.07998 * 122.46120 * 180.23641 * 22 21 20 40 40 H 1.07998 * 125.90506 * 359.95528 * 25 24 23 41 41 H 1.08004 * 126.26810 * 180.18783 * 26 25 24 42 42 H 1.08006 * 126.26054 * 179.69978 * 27 26 25 43 43 H 1.07999 * 125.90271 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.1492 -0.0076 2.3757 6 1 1.8927 1.0404 2.4241 7 6 2.6115 -0.6621 3.5091 8 7 2.9245 -1.9392 3.4500 9 14 2.7906 0.2699 5.1181 10 1 1.5228 0.1797 5.8861 11 1 3.8948 -0.3241 5.9139 12 1 3.0965 1.6948 4.8334 13 6 2.0399 -0.7212 -1.2493 14 1 3.1262 -0.6443 -1.2953 15 6 1.6352 -2.1955 -1.1881 16 7 1.4557 -0.1035 -2.4425 17 6 2.0911 -0.1937 -3.6276 18 8 3.1508 -0.7880 -3.7067 19 6 1.5086 0.4228 -4.8174 20 16 -0.0072 1.3120 -4.8678 21 6 0.1626 1.6053 -6.5395 22 6 1.2913 1.0689 -7.0113 23 6 2.0573 0.4007 -6.0764 24 7 3.2693 -0.2287 -6.3792 25 6 4.4450 -0.0599 -5.7043 26 6 5.3813 -0.8338 -6.2895 27 6 4.7664 -1.4978 -7.3704 28 6 3.4755 -1.1099 -7.4024 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 2.2490 -1.6318 1.1524 33 1 3.2472 -2.3967 4.2421 34 1 1.9980 -2.7092 -2.0783 35 1 2.0698 -2.6550 -0.3004 36 1 0.5489 -2.2724 -1.1421 37 1 0.6116 0.3703 -2.3794 38 1 -0.5480 2.1563 -7.1377 39 1 1.5820 1.1491 -8.0483 40 1 4.5976 0.5810 -4.8485 41 1 6.4144 -0.9251 -5.9880 42 1 5.2425 -2.1902 -8.0490 43 1 2.7329 -1.4386 -8.1144 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755247055.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:39:30 Heat of formation + Delta-G solvation = 55.863561 kcal Electronic energy + Delta-G solvation = -26017.226861 eV Core-core repulsion = 22383.259902 eV Total energy + Delta-G solvation = -3633.966959 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 1.77 seconds Orbital eigenvalues (eV) -42.49868 -40.92497 -38.89380 -38.16396 -35.65305 -33.68738 -32.88889 -31.53816 -30.09441 -29.82324 -29.47020 -26.24537 -26.02614 -24.83654 -22.68154 -22.26163 -21.29126 -20.83566 -20.01738 -19.91235 -19.34040 -18.15940 -17.20704 -16.67809 -16.61159 -16.19566 -15.88842 -15.70463 -15.37325 -15.31018 -15.09804 -14.73137 -14.54739 -14.23156 -14.03538 -13.76102 -13.53193 -13.36218 -13.17354 -13.14681 -13.01753 -12.95367 -12.81507 -12.68410 -12.15893 -12.13737 -12.05149 -11.69144 -11.64381 -11.17447 -10.96544 -10.41561 -10.27507 -9.85670 -9.15253 -9.05069 -9.01998 -7.94216 -5.23532 -0.79327 0.23122 0.70921 0.96167 1.47920 1.49554 1.57210 1.57737 1.93946 2.01845 2.09039 2.15787 2.57512 3.39540 3.62047 3.83952 3.90127 3.94130 4.00644 4.03340 4.26654 4.29336 4.33482 4.53025 4.55496 4.63978 4.66489 4.76909 4.81781 4.90663 4.91396 4.96797 5.01496 5.15601 5.20064 5.34443 5.38309 5.41454 5.52576 5.59793 6.04448 6.24818 6.27445 6.38100 6.54462 7.06457 7.34249 8.07525 8.30967 9.29314 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.016534 B = 0.002907 C = 0.002604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1693.061091 B = 9629.953218 C =10751.299281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.166 3.834 3 H 0.048 0.952 4 N -0.733 5.733 5 C -0.239 4.239 6 H 0.079 0.921 7 C -0.075 4.075 8 N -0.970 5.970 9 Si 0.972 3.028 10 H -0.286 1.286 11 H -0.299 1.299 12 H -0.269 1.269 13 C 0.153 3.847 14 H 0.059 0.941 15 C -0.148 4.148 16 N -0.702 5.702 17 C 0.577 3.423 18 O -0.553 6.553 19 C -0.320 4.320 20 S 0.304 5.696 21 C -0.193 4.193 22 C -0.163 4.163 23 C 0.169 3.831 24 N -0.396 5.396 25 C 0.029 3.971 26 C -0.226 4.226 27 C -0.201 4.201 28 C -0.022 4.022 29 H 0.052 0.948 30 H 0.047 0.953 31 H 0.074 0.926 32 H 0.376 0.624 33 H 0.250 0.750 34 H 0.047 0.953 35 H 0.054 0.946 36 H 0.073 0.927 37 H 0.407 0.593 38 H 0.219 0.781 39 H 0.170 0.830 40 H 0.142 0.858 41 H 0.140 0.860 42 H 0.157 0.843 43 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.756 8.557 -26.196 29.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.057 3.943 3 H 0.066 0.934 4 N -0.376 5.376 5 C -0.371 4.371 6 H 0.097 0.903 7 C -0.267 4.267 8 N -0.620 5.620 9 Si 0.801 3.199 10 H -0.213 1.213 11 H -0.226 1.226 12 H -0.194 1.194 13 C 0.048 3.952 14 H 0.078 0.922 15 C -0.207 4.207 16 N -0.355 5.355 17 C 0.365 3.635 18 O -0.433 6.433 19 C -0.442 4.442 20 S 0.572 5.428 21 C -0.331 4.331 22 C -0.194 4.194 23 C 0.061 3.939 24 N -0.070 5.070 25 C -0.099 4.099 26 C -0.250 4.250 27 C -0.225 4.225 28 C -0.148 4.148 29 H 0.071 0.929 30 H 0.066 0.934 31 H 0.092 0.908 32 H 0.210 0.790 33 H 0.059 0.941 34 H 0.066 0.934 35 H 0.073 0.927 36 H 0.092 0.908 37 H 0.245 0.755 38 H 0.236 0.764 39 H 0.187 0.813 40 H 0.159 0.841 41 H 0.158 0.842 42 H 0.174 0.826 43 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -10.404 8.827 -24.953 28.440 hybrid contribution 1.477 -0.516 0.335 1.600 sum -8.927 8.311 -24.618 27.474 Atomic orbital electron populations 1.22376 0.96493 1.01769 1.01272 1.20520 0.93992 0.94872 0.84921 0.93373 1.42641 1.78661 1.10531 1.05754 1.19612 1.35117 0.94324 0.88000 0.90339 1.25544 1.02823 0.96876 1.01477 1.69819 1.52517 1.10267 1.29417 0.85158 0.76838 0.78034 0.79829 1.21291 1.22603 1.19417 1.20922 0.97442 0.93064 0.83795 0.92237 1.22017 1.02348 0.95295 1.01019 1.45865 1.25826 1.56640 1.07208 1.17175 0.84156 0.79616 0.82585 1.90908 1.23102 1.44015 1.85264 1.24580 1.05935 1.16312 0.97361 1.82946 1.12109 1.44111 1.03617 1.25622 1.02016 1.04847 1.00657 1.19878 0.95902 1.01679 1.01924 1.17483 0.87328 0.96665 0.92462 1.41059 1.05850 1.34736 1.25355 1.21675 0.84573 1.04883 0.98815 1.21127 0.99999 1.03183 1.00733 1.21202 0.94174 1.05415 1.01739 1.22313 0.99057 0.98054 0.95367 0.92854 0.93357 0.90765 0.78962 0.94070 0.93421 0.92673 0.90766 0.75468 0.76385 0.81282 0.84064 0.84218 0.82560 0.79440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.92 9.01 71.98 0.65 -4.27 16 2 C 0.17 6.27 2.93 44.99 0.13 6.40 16 3 H 0.05 1.86 8.08 -2.39 -0.02 1.84 16 4 N -0.73 -36.18 5.03 -322.95 -1.63 -37.80 16 5 C -0.24 -12.99 9.93 84.03 0.83 -12.16 16 6 H 0.08 4.06 7.83 -2.91 -0.02 4.04 16 7 C -0.07 -4.27 5.50 84.86 0.47 -3.80 16 8 N -0.97 -59.35 13.06 21.65 0.28 -59.07 16 9 Si 0.97 45.88 29.55 68.60 2.03 47.91 16 10 H -0.29 -13.18 7.11 99.48 0.71 -12.48 16 11 H -0.30 -14.39 7.11 99.48 0.71 -13.69 16 12 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 13 C 0.15 5.37 2.62 44.99 0.12 5.49 16 14 H 0.06 2.48 7.58 -2.39 -0.02 2.46 16 15 C -0.15 -5.19 9.00 71.98 0.65 -4.54 16 16 N -0.70 -19.49 4.98 -447.01 -2.23 -21.72 16 17 C 0.58 17.57 7.68 86.29 0.66 18.23 16 18 O -0.55 -21.32 12.68 -4.52 -0.06 -21.38 16 19 C -0.32 -7.34 6.43 24.11 0.15 -7.19 16 20 S 0.30 3.62 22.13 -56.49 -1.25 2.37 16 21 C -0.19 -1.62 10.90 66.76 0.73 -0.89 16 22 C -0.16 -2.25 9.97 21.18 0.21 -2.03 16 23 C 0.17 3.80 5.99 37.61 0.23 4.02 16 24 N -0.40 -10.62 2.65 -348.78 -0.93 -11.54 16 25 C 0.03 0.88 8.52 83.17 0.71 1.59 16 26 C -0.23 -6.58 10.86 22.16 0.24 -6.34 16 27 C -0.20 -5.00 10.86 22.16 0.24 -4.76 16 28 C -0.02 -0.52 11.25 83.17 0.94 0.42 16 29 H 0.05 1.67 6.56 -2.39 -0.02 1.66 16 30 H 0.05 1.62 8.14 -2.38 -0.02 1.60 16 31 H 0.07 1.62 6.29 -2.39 -0.02 1.61 16 32 H 0.38 20.04 5.77 -92.71 -0.54 19.51 16 33 H 0.25 14.93 8.31 -92.71 -0.77 14.16 16 34 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 35 H 0.05 2.19 6.29 -2.39 -0.02 2.18 16 36 H 0.07 2.29 6.56 -2.39 -0.02 2.28 16 37 H 0.41 8.76 5.68 -92.71 -0.53 8.23 16 38 H 0.22 0.05 8.06 -2.91 -0.02 0.02 16 39 H 0.17 1.68 8.06 -2.91 -0.02 1.66 16 40 H 0.14 4.67 7.43 -2.91 -0.02 4.64 16 41 H 0.14 3.71 8.06 -2.91 -0.02 3.69 16 42 H 0.16 3.05 8.06 -2.91 -0.02 3.02 16 43 H 0.19 3.02 8.06 -2.91 -0.02 3.00 16 Total: -1.00 -74.42 365.82 3.17 -71.25 By element: Atomic # 1 Polarization: 39.81 SS G_CDS: -0.01 Total: 39.80 kcal Atomic # 6 Polarization: -16.78 SS G_CDS: 6.95 Total: -9.82 kcal Atomic # 7 Polarization: -125.63 SS G_CDS: -4.50 Total: -130.13 kcal Atomic # 8 Polarization: -21.32 SS G_CDS: -0.06 Total: -21.38 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 2.03 Total: 47.91 kcal Atomic # 16 Polarization: 3.62 SS G_CDS: -1.25 Total: 2.37 kcal Total: -74.42 3.17 -71.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755247055.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.111 kcal (2) G-P(sol) polarization free energy of solvation -74.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.247 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.77 seconds