Wall clock time and date at job start Tue Mar 31 2020 16:55:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.28059 * 124.23740 * 2 1 4 4 C 1.34410 * 117.91819 * 179.97438 * 3 2 1 5 5 C 1.41247 * 129.48568 * 179.97438 * 4 3 2 6 6 C 1.35750 * 120.63278 * 180.02562 * 5 4 3 7 7 C 1.40197 * 120.61887 * 0.02562 * 6 5 4 8 8 C 1.47595 * 120.12527 * 179.97438 * 7 6 5 9 9 O 1.21587 * 119.99671 * 200.81002 * 8 7 6 10 10 N 1.34767 * 119.99860 * 20.81283 * 8 7 6 11 11 C 1.46501 * 120.00461 * 6.50164 * 10 8 7 12 12 C 1.46510 * 119.99964 * 186.77917 * 10 8 7 13 13 C 1.53000 * 109.46833 * 269.72761 * 12 10 8 14 14 H 1.08997 * 109.46880 * 294.99116 * 13 12 10 15 15 C 1.53000 * 109.46863 * 174.99936 * 13 12 10 16 16 N 1.46496 * 109.47335 * 54.99882 * 13 12 10 17 17 C 1.36942 * 119.99508 * 204.99754 * 16 13 12 18 18 H 1.07995 * 120.00661 * 0.02562 * 17 16 13 19 19 C 1.38820 * 119.99612 * 179.97438 * 17 16 13 20 20 N 1.31614 * 119.99855 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 119.99639 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47643 * 0.02562 * 21 19 17 23 23 H 1.48508 * 109.47098 * 120.00239 * 21 19 17 24 24 H 1.48503 * 109.47203 * 239.99658 * 21 19 17 25 25 C 1.39176 * 119.74656 * 0.23144 * 7 6 5 26 26 C 1.38911 * 119.84758 * 359.51499 * 25 7 6 27 27 S 1.70637 * 124.24565 * 179.97438 * 2 1 3 28 28 H 1.08998 * 109.47258 * 90.02431 * 1 2 3 29 29 H 1.09004 * 109.46277 * 210.02507 * 1 2 3 30 30 H 1.08999 * 109.46974 * 330.01953 * 1 2 3 31 31 H 1.07997 * 119.68378 * 0.02562 * 5 4 3 32 32 H 1.08004 * 119.69075 * 179.97438 * 6 5 4 33 33 H 1.08995 * 109.47253 * 266.66158 * 11 10 8 34 34 H 1.09001 * 109.46704 * 26.66466 * 11 10 8 35 35 H 1.09003 * 109.46943 * 146.65794 * 11 10 8 36 36 H 1.09004 * 109.46300 * 29.72198 * 12 10 8 37 37 H 1.08990 * 109.47104 * 149.72063 * 12 10 8 38 38 H 1.08999 * 109.47721 * 59.99294 * 15 13 12 39 39 H 1.08995 * 109.47356 * 180.02562 * 15 13 12 40 40 H 1.09007 * 109.47082 * 299.99683 * 15 13 12 41 41 H 0.97001 * 120.00345 * 24.99854 * 16 13 12 42 42 H 0.97000 * 119.99956 * 179.97438 * 20 19 17 43 43 H 1.08003 * 120.07803 * 179.71817 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2275 1.0587 0.0000 4 6 3.5634 0.9107 0.0005 5 6 4.5761 1.8954 0.0002 6 6 5.8863 1.5401 0.0003 7 6 6.2597 0.1888 0.0003 8 6 7.6875 -0.1852 -0.0001 9 8 8.0260 -1.2915 -0.3743 10 7 8.6159 0.6994 0.4142 11 6 8.2010 1.9775 0.9979 12 6 10.0403 0.3856 0.2754 13 6 10.5315 -0.3242 1.5386 14 1 10.4679 0.3578 2.3865 15 6 11.9845 -0.7626 1.3448 16 7 9.6964 -1.5004 1.7940 17 6 9.5795 -1.9938 3.0661 18 1 10.1025 -1.5157 3.8810 19 6 8.7877 -3.1081 3.3082 20 7 8.1491 -3.6899 2.3153 21 14 8.6277 -3.7808 5.0434 22 1 9.4375 -2.9523 5.9723 23 1 7.2028 -3.7415 5.4601 24 1 9.1148 -5.1832 5.0776 25 6 5.2789 -0.7987 -0.0048 26 6 3.9369 -0.4401 0.0004 27 16 2.4673 -1.4105 0.0006 28 1 -0.3634 -0.0004 -1.0276 29 1 -0.3632 -0.8898 0.5143 30 1 -0.3633 0.8902 0.5135 31 1 4.3055 2.9409 -0.0002 32 1 6.6482 2.3056 -0.0004 33 1 8.1634 2.7380 0.2180 34 1 7.2138 1.8683 1.4470 35 1 8.9171 2.2769 1.7632 36 1 10.1865 -0.2648 -0.5870 37 1 10.6034 1.3081 0.1345 38 1 12.6059 0.1125 1.1547 39 1 12.3344 -1.2687 2.2445 40 1 12.0482 -1.4446 0.4968 41 1 9.2263 -1.9296 1.0621 42 1 7.5961 -4.4687 2.4844 43 1 5.5606 -1.8413 -0.0094 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755610879.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:55:23 Heat of formation + Delta-G solvation = 38.314914 kcal Electronic energy + Delta-G solvation = -26452.509370 eV Core-core repulsion = 22817.781444 eV Total energy + Delta-G solvation = -3634.727925 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 3.90 seconds Orbital eigenvalues (eV) -41.85771 -40.72445 -38.11340 -37.44042 -36.08239 -33.99071 -32.63253 -32.31111 -30.62426 -29.64850 -28.28967 -26.95918 -25.68132 -25.11520 -23.94744 -22.16650 -21.65725 -20.72682 -19.46443 -19.24414 -18.41656 -17.50214 -16.89708 -16.71024 -16.52293 -16.20162 -16.04327 -15.59601 -15.32936 -15.02742 -14.85468 -14.45552 -14.38532 -14.11980 -13.92515 -13.78866 -13.71310 -13.48652 -13.19018 -13.04980 -12.87689 -12.80785 -12.61078 -12.45863 -12.24571 -12.12947 -11.83765 -11.79846 -11.57464 -11.24371 -10.97011 -10.82763 -10.77279 -9.72420 -9.49789 -9.20811 -8.88036 -7.83877 -5.12282 -0.92898 0.02752 0.09840 0.60975 0.91672 1.40273 1.41754 1.51226 1.89752 2.15659 2.56583 2.71146 2.80658 3.44448 3.46677 3.50750 3.86796 3.98942 4.01921 4.09944 4.21268 4.22658 4.42133 4.53325 4.58639 4.62215 4.64968 4.68365 4.72833 4.75178 4.88249 4.92663 4.97523 5.01200 5.11484 5.12364 5.16317 5.29778 5.46531 5.52117 5.55720 5.77090 6.34479 6.44668 6.48278 7.27692 7.44782 8.31493 8.55481 9.37560 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.011792 B = 0.004025 C = 0.003249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2373.909702 B = 6955.691680 C = 8615.429477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.102 3.898 3 N -0.491 5.491 4 C 0.092 3.908 5 C -0.073 4.073 6 C -0.083 4.083 7 C -0.124 4.124 8 C 0.551 3.449 9 O -0.561 6.561 10 N -0.599 5.599 11 C 0.057 3.943 12 C 0.116 3.884 13 C 0.142 3.858 14 H 0.048 0.952 15 C -0.154 4.154 16 N -0.740 5.740 17 C -0.231 4.231 18 H 0.070 0.930 19 C -0.080 4.080 20 N -0.960 5.960 21 Si 0.962 3.038 22 H -0.264 1.264 23 H -0.299 1.299 24 H -0.297 1.297 25 C -0.024 4.024 26 C -0.220 4.220 27 S 0.107 5.893 28 H 0.112 0.888 29 H 0.104 0.896 30 H 0.104 0.896 31 H 0.175 0.825 32 H 0.199 0.801 33 H 0.105 0.895 34 H 0.079 0.921 35 H 0.084 0.916 36 H 0.058 0.942 37 H 0.129 0.871 38 H 0.083 0.917 39 H 0.033 0.967 40 H 0.033 0.967 41 H 0.387 0.613 42 H 0.242 0.758 43 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.125 17.638 -6.738 21.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.181 4.181 3 N -0.206 5.206 4 C -0.030 4.030 5 C -0.093 4.093 6 C -0.104 4.104 7 C -0.131 4.131 8 C 0.340 3.660 9 O -0.440 6.440 10 N -0.331 5.331 11 C -0.084 4.084 12 C -0.007 4.007 13 C 0.032 3.968 14 H 0.066 0.934 15 C -0.214 4.214 16 N -0.386 5.386 17 C -0.364 4.364 18 H 0.088 0.912 19 C -0.272 4.272 20 N -0.611 5.611 21 Si 0.792 3.208 22 H -0.188 1.188 23 H -0.227 1.227 24 H -0.224 1.224 25 C -0.047 4.047 26 C -0.339 4.339 27 S 0.364 5.636 28 H 0.130 0.870 29 H 0.123 0.877 30 H 0.122 0.878 31 H 0.193 0.807 32 H 0.215 0.785 33 H 0.123 0.877 34 H 0.097 0.903 35 H 0.103 0.897 36 H 0.076 0.924 37 H 0.147 0.853 38 H 0.102 0.898 39 H 0.052 0.948 40 H 0.052 0.948 41 H 0.225 0.775 42 H 0.051 0.949 43 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -11.489 16.516 -6.758 21.224 hybrid contribution 0.584 -1.079 0.841 1.488 sum -10.904 15.438 -5.917 19.805 Atomic orbital electron populations 1.20835 0.81279 1.06075 1.06030 1.27684 1.03553 0.89987 0.96901 1.66263 1.03655 1.31799 1.18927 1.19801 0.90138 0.91633 1.01394 1.20697 0.89447 0.99623 0.99574 1.22117 0.97781 0.94825 0.95628 1.19901 0.92245 0.95195 1.05752 1.18402 0.86056 0.83934 0.77570 1.90747 1.81939 1.21863 1.49409 1.47524 1.05911 1.18772 1.60854 1.22703 1.02397 0.83660 0.99655 1.21886 0.80068 1.01360 0.97372 1.21011 0.90679 0.88885 0.96198 0.93350 1.22259 0.97814 1.01142 1.00225 1.43142 1.56064 1.32242 1.07150 1.19638 1.21623 1.07673 0.87458 0.91161 1.25509 1.01341 0.99967 1.00399 1.69969 1.36121 1.23665 1.31346 0.85228 0.76784 0.77893 0.80888 1.18799 1.22673 1.22437 1.20322 0.89736 0.99596 0.95042 1.23827 0.98647 0.98133 1.13253 1.84066 0.94838 1.10903 1.73795 0.86965 0.87745 0.87789 0.80730 0.78460 0.87683 0.90274 0.89693 0.92385 0.85292 0.89839 0.94789 0.94776 0.77473 0.94900 0.87493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.97 10.44 71.24 0.74 -0.22 16 2 C 0.10 2.31 7.29 88.66 0.65 2.95 16 3 N -0.49 -13.17 10.56 -182.20 -1.92 -15.09 16 4 C 0.09 2.69 7.00 39.95 0.28 2.97 16 5 C -0.07 -1.70 10.03 22.43 0.23 -1.47 16 6 C -0.08 -2.01 7.51 22.17 0.17 -1.84 16 7 C -0.12 -4.40 5.56 -20.11 -0.11 -4.52 16 8 C 0.55 22.56 6.96 86.71 0.60 23.17 16 9 O -0.56 -29.20 13.52 -3.99 -0.05 -29.26 16 10 N -0.60 -19.16 2.77 -850.47 -2.36 -21.52 16 11 C 0.06 1.13 8.65 127.77 1.10 2.23 16 12 C 0.12 3.68 5.15 86.38 0.44 4.12 16 13 C 0.14 5.61 3.19 44.99 0.14 5.76 16 14 H 0.05 1.85 8.08 -2.39 -0.02 1.83 16 15 C -0.15 -5.45 9.49 71.98 0.68 -4.77 16 16 N -0.74 -39.98 4.53 -322.94 -1.46 -41.44 16 17 C -0.23 -13.61 9.93 84.03 0.83 -12.77 16 18 H 0.07 3.95 7.83 -2.91 -0.02 3.92 16 19 C -0.08 -4.92 5.50 84.86 0.47 -4.45 16 20 N -0.96 -63.98 13.06 21.65 0.28 -63.70 16 21 Si 0.96 49.19 29.55 68.60 2.03 51.22 16 22 H -0.26 -12.49 7.11 99.48 0.71 -11.79 16 23 H -0.30 -15.37 7.11 99.48 0.71 -14.66 16 24 H -0.30 -15.22 7.11 99.48 0.71 -14.52 16 25 C -0.02 -0.94 9.61 22.66 0.22 -0.72 16 26 C -0.22 -7.43 6.54 22.90 0.15 -7.28 16 27 S 0.11 2.92 23.11 -56.49 -1.31 1.62 16 28 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.18 2.71 8.06 -2.91 -0.02 2.68 16 32 H 0.20 3.07 4.03 -2.91 -0.01 3.06 16 33 H 0.11 1.13 6.98 -2.39 -0.02 1.11 16 34 H 0.08 1.68 5.26 -2.39 -0.01 1.66 16 35 H 0.08 1.50 8.10 -2.39 -0.02 1.48 16 36 H 0.06 2.11 7.52 -2.39 -0.02 2.09 16 37 H 0.13 2.64 8.07 -2.39 -0.02 2.62 16 38 H 0.08 2.14 8.14 -2.39 -0.02 2.13 16 39 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 40 H 0.03 1.28 8.14 -2.38 -0.02 1.26 16 41 H 0.39 23.31 4.75 -92.71 -0.44 22.87 16 42 H 0.24 15.75 8.31 -92.71 -0.77 14.97 16 43 H 0.11 4.98 7.78 -2.91 -0.02 4.96 16 Total: -1.00 -87.67 364.88 2.41 -85.25 By element: Atomic # 1 Polarization: 29.15 SS G_CDS: 0.61 Total: 29.76 kcal Atomic # 6 Polarization: -3.44 SS G_CDS: 6.60 Total: 3.16 kcal Atomic # 7 Polarization: -136.29 SS G_CDS: -5.46 Total: -141.75 kcal Atomic # 8 Polarization: -29.20 SS G_CDS: -0.05 Total: -29.26 kcal Atomic # 14 Polarization: 49.19 SS G_CDS: 2.03 Total: 51.22 kcal Atomic # 16 Polarization: 2.92 SS G_CDS: -1.31 Total: 1.62 kcal Total: -87.67 2.41 -85.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755610879.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.568 kcal (2) G-P(sol) polarization free energy of solvation -87.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.254 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.90 seconds