Wall clock time and date at job start Tue Mar 31 2020 18:42:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.50699 * 109.46866 * 240.00048 * 2 1 3 5 5 H 1.08003 * 120.00271 * 240.00086 * 4 2 1 6 6 C 1.37879 * 120.00161 * 59.99586 * 4 2 1 7 7 N 1.31509 * 119.99895 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 120.00268 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46959 * 90.00076 * 8 6 4 10 10 H 1.48491 * 109.47193 * 210.00468 * 8 6 4 11 11 H 1.48498 * 109.46715 * 330.00553 * 8 6 4 12 12 N 1.46500 * 109.47249 * 120.00351 * 2 1 3 13 13 C 1.46499 * 120.00401 * 59.99673 * 12 2 1 14 14 S 1.65600 * 119.99854 * 239.99896 * 12 2 1 15 15 O 1.42101 * 106.40246 * 203.53898 * 14 12 2 16 16 O 1.42103 * 106.40034 * 336.45770 * 14 12 2 17 17 N 1.65601 * 107.21882 * 89.99628 * 14 12 2 18 18 C 1.46503 * 119.99776 * 65.00378 * 17 14 12 19 19 C 1.53000 * 109.47105 * 164.99878 * 18 17 14 20 20 H 1.09000 * 109.47357 * 304.99734 * 19 18 17 21 21 O 1.42908 * 109.47264 * 64.99847 * 19 18 17 22 22 C 1.52994 * 109.47087 * 184.99691 * 19 18 17 23 23 N 1.46502 * 109.47416 * 175.00204 * 22 19 18 24 24 C 1.35313 * 125.87312 * 124.99992 * 23 22 19 25 25 C 1.35352 * 106.17520 * 180.02562 * 24 23 22 26 26 N 1.33772 * 106.49707 * 0.02562 * 25 24 23 27 27 N 1.28638 * 108.88799 * 359.73303 * 26 25 24 28 28 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 29 29 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 30 30 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 31 31 H 0.97006 * 120.00358 * 179.97438 * 7 6 4 32 32 H 1.08993 * 109.47066 * 89.99858 * 13 12 2 33 33 H 1.09004 * 109.47229 * 210.00249 * 13 12 2 34 34 H 1.09000 * 109.47083 * 330.00074 * 13 12 2 35 35 H 0.97000 * 120.00256 * 245.00310 * 17 14 12 36 36 H 1.09001 * 109.47031 * 284.99750 * 18 17 14 37 37 H 1.08991 * 109.47340 * 44.99621 * 18 17 14 38 38 H 0.96700 * 113.99490 * 59.99753 * 21 19 18 39 39 H 1.09007 * 109.47466 * 295.00001 * 22 19 18 40 40 H 1.08996 * 109.47245 * 55.00026 * 22 19 18 41 41 H 1.07997 * 126.90769 * 0.02562 * 24 23 22 42 42 H 1.07997 * 126.74722 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5886 -1.1315 6 6 1.6992 -0.2394 -2.4828 7 7 0.9435 0.8301 -2.6034 8 14 2.3223 -1.1196 -4.0080 9 1 1.3446 -2.1616 -4.4124 10 1 2.4871 -0.1403 -5.1120 11 1 3.6307 -1.7566 -3.7120 12 7 2.0184 -0.6907 1.1961 13 6 1.6645 -2.0932 1.4280 14 16 2.9705 0.1141 2.2862 15 8 3.7120 -0.8790 2.9814 16 8 3.5795 1.1829 1.5747 17 7 1.9609 0.8090 3.3997 18 6 1.1511 -0.0353 4.2817 19 6 0.6089 0.8075 5.4378 20 1 1.4367 1.3003 5.9477 21 8 -0.2909 1.7934 4.9275 22 6 -0.1319 -0.0970 6.4246 23 7 -0.5477 0.6882 7.5895 24 6 -1.8098 0.7920 8.0662 25 6 -1.7401 1.6091 9.1430 26 7 -0.4558 1.9610 9.2703 27 7 0.2256 1.3946 8.3377 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 0.7093 1.1618 -3.4844 32 1 2.4157 -2.7377 0.9716 33 1 1.6239 -2.2853 2.5002 34 1 0.6905 -2.3003 0.9847 35 1 1.9055 1.7750 3.4681 36 1 0.3190 -0.4567 3.7178 37 1 1.7671 -0.8424 4.6781 38 1 -1.0535 1.4256 4.4603 39 1 -1.0113 -0.5208 5.9395 40 1 0.5289 -0.9020 6.7462 41 1 -2.6947 0.3181 7.6677 42 1 -2.5602 1.9170 9.7746 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001771771458.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:42:02 Heat of formation + Delta-G solvation = -18.916198 kcal Electronic energy + Delta-G solvation = -27375.815496 eV Core-core repulsion = 23327.756581 eV Total energy + Delta-G solvation = -4048.058916 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 333.130 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.49201 -38.72208 -36.75078 -36.26004 -35.31264 -34.74739 -34.50182 -32.64751 -31.30515 -30.35676 -29.18568 -26.39549 -25.68902 -25.19429 -23.24026 -22.63685 -21.69841 -20.85868 -18.94092 -18.35820 -17.45192 -17.07231 -16.99926 -16.65220 -16.49800 -16.00594 -15.41762 -15.19264 -15.02780 -14.60396 -14.29602 -14.16681 -13.57232 -13.49791 -13.28479 -12.90855 -12.79022 -12.11923 -12.05107 -11.84344 -11.75921 -11.67756 -11.57446 -11.43311 -11.32400 -11.16494 -11.04294 -10.94156 -10.84932 -10.54798 -10.36522 -10.18756 -10.08853 -9.65278 -9.53312 -9.31508 -8.51374 -8.07304 -6.12656 -4.19426 1.07084 1.33525 1.96355 2.34841 3.24381 3.30830 3.32341 3.37023 3.71251 3.88010 4.01404 4.14598 4.21237 4.35730 4.40806 4.64949 4.70627 4.80881 4.93445 4.94741 5.12669 5.18989 5.30755 5.43141 5.56224 5.77713 5.88176 5.99941 6.23240 6.25725 6.51729 6.66020 6.69175 6.92686 7.02316 7.15109 7.39288 7.56178 7.72258 7.97486 8.21077 8.25353 8.82889 9.46791 10.93029 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.024428 B = 0.002772 C = 0.002656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.963585 B =10098.637998 C =10538.458001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.268 3.732 3 H 0.060 0.940 4 C -0.521 4.521 5 H 0.062 0.938 6 C 0.063 3.937 7 N -0.890 5.890 8 Si 0.899 3.101 9 H -0.281 1.281 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.990 5.990 13 C 0.108 3.892 14 S 2.780 3.220 15 O -0.996 6.996 16 O -0.970 6.970 17 N -1.128 6.128 18 C 0.094 3.906 19 C 0.090 3.910 20 H 0.125 0.875 21 O -0.545 6.545 22 C 0.080 3.920 23 N -0.282 5.282 24 C -0.048 4.048 25 C -0.054 4.054 26 N -0.273 5.273 27 N -0.080 5.080 28 H 0.010 0.990 29 H 0.093 0.907 30 H 0.033 0.967 31 H 0.264 0.736 32 H 0.050 0.950 33 H 0.046 0.954 34 H 0.072 0.928 35 H 0.418 0.582 36 H 0.073 0.927 37 H 0.089 0.911 38 H 0.378 0.622 39 H 0.115 0.885 40 H 0.115 0.885 41 H 0.190 0.810 42 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.474 -4.194 17.402 20.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.165 3.835 3 H 0.077 0.923 4 C -0.561 4.561 5 H 0.080 0.920 6 C -0.139 4.139 7 N -0.529 5.529 8 Si 0.726 3.274 9 H -0.207 1.207 10 H -0.211 1.211 11 H -0.198 1.198 12 N -0.833 5.833 13 C -0.038 4.038 14 S 2.788 3.212 15 O -0.979 6.979 16 O -0.954 6.954 17 N -0.887 5.887 18 C -0.034 4.034 19 C 0.028 3.972 20 H 0.143 0.857 21 O -0.350 6.350 22 C -0.042 4.042 23 N -0.076 5.076 24 C -0.199 4.199 25 C -0.211 4.211 26 N -0.139 5.139 27 N -0.060 5.060 28 H 0.029 0.971 29 H 0.111 0.889 30 H 0.052 0.948 31 H 0.073 0.927 32 H 0.069 0.931 33 H 0.064 0.936 34 H 0.091 0.909 35 H 0.252 0.748 36 H 0.091 0.909 37 H 0.107 0.893 38 H 0.226 0.774 39 H 0.133 0.867 40 H 0.133 0.867 41 H 0.207 0.793 42 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -6.685 -3.357 17.751 19.263 hybrid contribution -1.847 -1.009 -1.447 2.554 sum -8.531 -4.367 16.305 18.913 Atomic orbital electron populations 1.22116 0.98312 0.99570 1.00651 1.18740 0.91226 0.93050 0.80458 0.92284 1.21325 1.31679 1.13031 0.90026 0.91950 1.24910 0.94959 0.94980 0.99042 1.69850 1.36555 1.22605 1.23856 0.86489 0.79294 0.79272 0.82315 1.20670 1.21099 1.19835 1.57709 1.70050 1.19694 1.35816 1.21165 1.01861 0.82294 0.98487 1.01985 0.73590 0.73182 0.72422 1.93540 1.69001 1.60762 1.74604 1.93630 1.74115 1.55952 1.71665 1.56155 1.62059 1.17777 1.52693 1.21735 0.96376 0.93711 0.91625 1.22490 0.92916 0.89787 0.91986 0.85705 1.86730 1.38236 1.34380 1.75687 1.22922 1.03191 0.94142 0.83975 1.47286 1.06285 1.32445 1.21550 1.23674 0.89855 1.06435 0.99945 1.23618 0.96207 1.01369 0.99909 1.75133 1.03885 1.18943 1.15901 1.78313 1.19846 1.06902 1.00987 0.97104 0.88858 0.94832 0.92653 0.93146 0.93555 0.90938 0.74780 0.90898 0.89269 0.77403 0.86670 0.86667 0.79340 0.79450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.08 8.95 37.16 0.33 -2.75 16 2 C 0.27 6.21 2.62 -69.08 -0.18 6.03 16 3 H 0.06 1.55 6.91 -51.93 -0.36 1.19 16 4 C -0.52 -13.57 8.37 -34.44 -0.29 -13.86 16 5 H 0.06 1.62 7.65 -52.48 -0.40 1.22 16 6 C 0.06 1.68 5.30 -17.82 -0.09 1.59 16 7 N -0.89 -24.18 11.32 55.43 0.63 -23.55 16 8 Si 0.90 20.69 29.54 -169.99 -5.02 15.67 16 9 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 10 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 12 N -0.99 -18.82 3.12 -115.85 -0.36 -19.18 16 13 C 0.11 1.71 9.53 59.85 0.57 2.28 16 14 S 2.78 50.58 6.09 -107.50 -0.66 49.92 16 15 O -1.00 -19.18 16.68 -57.17 -0.95 -20.14 16 16 O -0.97 -21.95 16.70 -57.17 -0.95 -22.91 16 17 N -1.13 -14.70 6.02 -10.61 -0.06 -14.76 16 18 C 0.09 0.84 5.88 -4.04 -0.02 0.81 16 19 C 0.09 0.71 3.14 -26.73 -0.08 0.62 16 20 H 0.13 1.23 8.00 -51.93 -0.42 0.81 16 21 O -0.55 -4.89 13.09 -35.23 -0.46 -5.35 16 22 C 0.08 0.42 6.09 -4.04 -0.02 0.40 16 23 N -0.28 -2.40 3.39 -61.26 -0.21 -2.61 16 24 C -0.05 -0.33 11.57 -17.05 -0.20 -0.52 16 25 C -0.05 -0.46 12.05 -17.74 -0.21 -0.68 16 26 N -0.27 -3.45 12.41 30.23 0.38 -3.07 16 27 N -0.08 -0.99 12.83 60.35 0.77 -0.22 16 28 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 29 H 0.09 2.23 6.07 -51.93 -0.32 1.91 16 30 H 0.03 0.65 6.66 -51.93 -0.35 0.31 16 31 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 32 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.05 0.56 7.79 -51.93 -0.40 0.16 16 34 H 0.07 1.09 6.43 -51.93 -0.33 0.75 16 35 H 0.42 5.28 8.51 -34.47 -0.29 4.99 16 36 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.09 0.74 7.75 -51.93 -0.40 0.33 16 38 H 0.38 2.03 9.05 45.56 0.41 2.44 16 39 H 0.12 0.20 8.07 -51.93 -0.42 -0.22 16 40 H 0.12 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.19 0.47 8.06 -52.49 -0.42 0.05 16 42 H 0.19 0.98 8.06 -52.49 -0.42 0.56 16 LS Contribution 365.91 15.07 5.51 5.51 Total: -1.00 -36.92 365.91 -6.54 -43.46 By element: Atomic # 1 Polarization: 8.24 SS G_CDS: -4.95 Total: 3.29 kcal Atomic # 6 Polarization: -5.87 SS G_CDS: -0.20 Total: -6.08 kcal Atomic # 7 Polarization: -64.54 SS G_CDS: 1.14 Total: -63.39 kcal Atomic # 8 Polarization: -46.02 SS G_CDS: -2.37 Total: -48.39 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Atomic # 16 Polarization: 50.58 SS G_CDS: -0.66 Total: 49.92 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -36.92 -6.54 -43.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001771771458.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.541 kcal (2) G-P(sol) polarization free energy of solvation -36.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds