Wall clock time and date at job start Tue Mar 31 2020 18:42:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.50699 * 109.46866 * 240.00048 * 2 1 3 5 5 H 1.08003 * 120.00271 * 240.00086 * 4 2 1 6 6 C 1.37879 * 120.00161 * 59.99586 * 4 2 1 7 7 N 1.31509 * 119.99895 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 120.00268 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46959 * 90.00076 * 8 6 4 10 10 H 1.48491 * 109.47193 * 210.00468 * 8 6 4 11 11 H 1.48498 * 109.46715 * 330.00553 * 8 6 4 12 12 N 1.46500 * 109.47249 * 120.00351 * 2 1 3 13 13 C 1.46499 * 120.00401 * 59.99673 * 12 2 1 14 14 S 1.65600 * 119.99854 * 239.99896 * 12 2 1 15 15 O 1.42101 * 106.40246 * 203.53898 * 14 12 2 16 16 O 1.42103 * 106.40034 * 336.45770 * 14 12 2 17 17 N 1.65601 * 107.21882 * 89.99628 * 14 12 2 18 18 C 1.46503 * 119.99776 * 65.00378 * 17 14 12 19 19 C 1.53000 * 109.47105 * 164.99878 * 18 17 14 20 20 H 1.09000 * 109.47357 * 304.99734 * 19 18 17 21 21 O 1.42908 * 109.47264 * 64.99847 * 19 18 17 22 22 C 1.52994 * 109.47087 * 184.99691 * 19 18 17 23 23 N 1.46502 * 109.47416 * 175.00204 * 22 19 18 24 24 C 1.35313 * 125.87312 * 124.99992 * 23 22 19 25 25 C 1.35352 * 106.17520 * 180.02562 * 24 23 22 26 26 N 1.33772 * 106.49707 * 0.02562 * 25 24 23 27 27 N 1.28638 * 108.88799 * 359.73303 * 26 25 24 28 28 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 29 29 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 30 30 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 31 31 H 0.97006 * 120.00358 * 179.97438 * 7 6 4 32 32 H 1.08993 * 109.47066 * 89.99858 * 13 12 2 33 33 H 1.09004 * 109.47229 * 210.00249 * 13 12 2 34 34 H 1.09000 * 109.47083 * 330.00074 * 13 12 2 35 35 H 0.97000 * 120.00256 * 245.00310 * 17 14 12 36 36 H 1.09001 * 109.47031 * 284.99750 * 18 17 14 37 37 H 1.08991 * 109.47340 * 44.99621 * 18 17 14 38 38 H 0.96700 * 113.99490 * 59.99753 * 21 19 18 39 39 H 1.09007 * 109.47466 * 295.00001 * 22 19 18 40 40 H 1.08996 * 109.47245 * 55.00026 * 22 19 18 41 41 H 1.07997 * 126.90769 * 0.02562 * 24 23 22 42 42 H 1.07997 * 126.74722 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5886 -1.1315 6 6 1.6992 -0.2394 -2.4828 7 7 0.9435 0.8301 -2.6034 8 14 2.3223 -1.1196 -4.0080 9 1 1.3446 -2.1616 -4.4124 10 1 2.4871 -0.1403 -5.1120 11 1 3.6307 -1.7566 -3.7120 12 7 2.0184 -0.6907 1.1961 13 6 1.6645 -2.0932 1.4280 14 16 2.9705 0.1141 2.2862 15 8 3.7120 -0.8790 2.9814 16 8 3.5795 1.1829 1.5747 17 7 1.9609 0.8090 3.3997 18 6 1.1511 -0.0353 4.2817 19 6 0.6089 0.8075 5.4378 20 1 1.4367 1.3003 5.9477 21 8 -0.2909 1.7934 4.9275 22 6 -0.1319 -0.0970 6.4246 23 7 -0.5477 0.6882 7.5895 24 6 -1.8098 0.7920 8.0662 25 6 -1.7401 1.6091 9.1430 26 7 -0.4558 1.9610 9.2703 27 7 0.2256 1.3946 8.3377 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 0.7093 1.1618 -3.4844 32 1 2.4157 -2.7377 0.9716 33 1 1.6239 -2.2853 2.5002 34 1 0.6905 -2.3003 0.9847 35 1 1.9055 1.7750 3.4681 36 1 0.3190 -0.4567 3.7178 37 1 1.7671 -0.8424 4.6781 38 1 -1.0535 1.4256 4.4603 39 1 -1.0113 -0.5208 5.9395 40 1 0.5289 -0.9020 6.7462 41 1 -2.6947 0.3181 7.6677 42 1 -2.5602 1.9170 9.7746 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001771771458.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:42:01 Heat of formation + Delta-G solvation = -52.377227 kcal Electronic energy + Delta-G solvation = -27377.266475 eV Core-core repulsion = 23327.756581 eV Total energy + Delta-G solvation = -4049.509895 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 333.130 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -44.10753 -39.37384 -38.31216 -37.86720 -36.88628 -35.55023 -35.22704 -34.51127 -31.90268 -31.04249 -30.87755 -27.25909 -27.14581 -26.87982 -23.89354 -23.25771 -22.61039 -22.24403 -20.26800 -19.04094 -18.82110 -18.55608 -18.13445 -17.60222 -17.27110 -17.21027 -16.78668 -16.26500 -15.77363 -15.71075 -15.20398 -15.04703 -14.89850 -14.70814 -14.57671 -14.07660 -13.72138 -13.43257 -13.37850 -13.16465 -13.13796 -13.05255 -12.97349 -12.76827 -12.65819 -12.55881 -12.29694 -12.22992 -12.13711 -11.88482 -11.79339 -11.60179 -11.11683 -10.81657 -10.54459 -10.47401 -10.25440 -9.64931 -8.11184 -6.24259 -0.33883 0.75123 1.41575 1.44843 1.49415 1.53417 1.70264 2.06467 2.43587 2.64460 3.17495 3.23226 3.31962 3.50894 3.64324 3.75909 3.83760 4.09946 4.16128 4.34559 4.38486 4.40796 4.46019 4.71070 4.72496 4.84486 4.88188 4.99675 5.04153 5.09173 5.19187 5.25526 5.33782 5.63965 5.72811 5.73523 5.90920 6.03283 6.20403 6.33360 6.74339 6.83994 7.44959 7.59763 8.92541 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.024428 B = 0.002772 C = 0.002656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.963585 B =10098.637998 C =10538.458001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.273 3.727 3 H 0.021 0.979 4 C -0.538 4.538 5 H 0.055 0.945 6 C 0.018 3.982 7 N -0.913 5.913 8 Si 0.952 3.048 9 H -0.268 1.268 10 H -0.286 1.286 11 H -0.277 1.277 12 N -0.994 5.994 13 C 0.100 3.900 14 S 2.797 3.203 15 O -1.008 7.008 16 O -1.023 7.023 17 N -1.117 6.117 18 C 0.084 3.916 19 C 0.099 3.901 20 H 0.097 0.903 21 O -0.567 6.567 22 C 0.077 3.923 23 N -0.280 5.280 24 C -0.028 4.028 25 C -0.073 4.073 26 N -0.320 5.320 27 N -0.131 5.131 28 H 0.042 0.958 29 H 0.062 0.938 30 H 0.047 0.953 31 H 0.264 0.736 32 H 0.036 0.964 33 H 0.088 0.912 34 H 0.082 0.918 35 H 0.421 0.579 36 H 0.104 0.896 37 H 0.100 0.900 38 H 0.394 0.606 39 H 0.163 0.837 40 H 0.130 0.870 41 H 0.238 0.762 42 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.822 -6.307 18.061 22.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.168 3.832 3 H 0.038 0.962 4 C -0.577 4.577 5 H 0.073 0.927 6 C -0.182 4.182 7 N -0.553 5.553 8 Si 0.778 3.222 9 H -0.193 1.193 10 H -0.212 1.212 11 H -0.202 1.202 12 N -0.836 5.836 13 C -0.046 4.046 14 S 2.806 3.194 15 O -0.991 6.991 16 O -1.007 7.007 17 N -0.880 5.880 18 C -0.043 4.043 19 C 0.037 3.963 20 H 0.114 0.886 21 O -0.375 6.375 22 C -0.044 4.044 23 N -0.074 5.074 24 C -0.180 4.180 25 C -0.231 4.231 26 N -0.185 5.185 27 N -0.110 5.110 28 H 0.060 0.940 29 H 0.081 0.919 30 H 0.066 0.934 31 H 0.073 0.927 32 H 0.055 0.945 33 H 0.106 0.894 34 H 0.101 0.899 35 H 0.256 0.744 36 H 0.122 0.878 37 H 0.118 0.882 38 H 0.245 0.755 39 H 0.180 0.820 40 H 0.148 0.852 41 H 0.254 0.746 42 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -9.018 -5.502 18.414 21.229 hybrid contribution -1.168 -0.367 -1.573 1.993 sum -10.186 -5.869 16.841 20.538 Atomic orbital electron populations 1.21888 0.96307 1.00439 1.00655 1.18389 0.92589 0.91104 0.81081 0.96162 1.21675 1.31521 1.12946 0.91596 0.92662 1.25605 0.95308 0.95696 1.01594 1.69970 1.37410 1.23595 1.24275 0.85646 0.78775 0.78467 0.79267 1.19290 1.21201 1.20183 1.57532 1.69947 1.21103 1.35028 1.21428 1.01831 0.80042 1.01260 1.01179 0.73598 0.72219 0.72360 1.93518 1.69744 1.61191 1.74633 1.93554 1.75977 1.57739 1.73426 1.55692 1.62126 1.18186 1.51983 1.22139 0.96961 0.93484 0.91695 1.22245 0.92535 0.89615 0.91857 0.88553 1.86709 1.39124 1.35493 1.76146 1.23203 1.05418 0.93175 0.82572 1.47551 1.06666 1.31643 1.21507 1.24424 0.90342 1.04682 0.98550 1.24241 0.95624 1.01932 1.01308 1.75056 1.05964 1.20450 1.17070 1.78247 1.21214 1.09138 1.02397 0.93952 0.91943 0.93396 0.92713 0.94528 0.89396 0.89909 0.74402 0.87827 0.88177 0.75511 0.81953 0.85162 0.74565 0.77044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.38 8.95 71.98 0.64 -4.74 16 2 C 0.27 12.60 2.62 44.25 0.12 12.72 16 3 H 0.02 1.10 6.91 -2.39 -0.02 1.09 16 4 C -0.54 -28.14 8.37 25.60 0.21 -27.92 16 5 H 0.06 2.89 7.65 -2.91 -0.02 2.87 16 6 C 0.02 0.95 5.30 84.66 0.45 1.40 16 7 N -0.91 -50.15 11.32 21.45 0.24 -49.90 16 8 Si 0.95 42.43 29.54 68.60 2.03 44.45 16 9 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 10 H -0.29 -12.70 7.11 99.48 0.71 -11.99 16 11 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 12 N -0.99 -36.59 3.12 -520.44 -1.62 -38.21 16 13 C 0.10 2.88 9.53 127.77 1.22 4.09 16 14 S 2.80 100.35 6.09 -56.49 -0.34 100.00 16 15 O -1.01 -37.64 16.68 -128.00 -2.14 -39.78 16 16 O -1.02 -47.68 16.70 -128.00 -2.14 -49.82 16 17 N -1.12 -27.49 6.02 -187.49 -1.13 -28.62 16 18 C 0.08 1.22 5.88 86.38 0.51 1.72 16 19 C 0.10 1.31 3.14 30.59 0.10 1.41 16 20 H 0.10 1.86 8.00 -2.39 -0.02 1.84 16 21 O -0.57 -8.76 13.09 -148.98 -1.95 -10.71 16 22 C 0.08 0.51 6.09 86.38 0.53 1.04 16 23 N -0.28 -4.05 3.39 -347.74 -1.18 -5.23 16 24 C -0.03 -0.28 11.57 83.49 0.97 0.68 16 25 C -0.07 -1.14 12.05 83.73 1.01 -0.13 16 26 N -0.32 -8.11 12.41 -58.26 -0.72 -8.83 16 27 N -0.13 -3.18 12.83 37.02 0.48 -2.71 16 28 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 29 H 0.06 2.95 6.07 -2.39 -0.01 2.93 16 30 H 0.05 1.75 6.66 -2.39 -0.02 1.74 16 31 H 0.26 13.82 8.31 -92.70 -0.77 13.05 16 32 H 0.04 1.14 8.14 -2.39 -0.02 1.13 16 33 H 0.09 1.78 7.79 -2.39 -0.02 1.76 16 34 H 0.08 2.22 6.43 -2.39 -0.02 2.20 16 35 H 0.42 10.39 8.51 -96.74 -0.82 9.57 16 36 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.10 1.28 7.75 -2.39 -0.02 1.26 16 38 H 0.39 2.74 9.05 -74.06 -0.67 2.07 16 39 H 0.16 -0.47 8.07 -2.38 -0.02 -0.49 16 40 H 0.13 0.52 8.14 -2.39 -0.02 0.50 16 41 H 0.24 -0.24 8.06 -2.91 -0.02 -0.26 16 42 H 0.21 1.80 8.06 -2.91 -0.02 1.77 16 Total: -1.00 -84.85 365.91 -3.16 -88.01 By element: Atomic # 1 Polarization: 11.50 SS G_CDS: -0.43 Total: 11.08 kcal Atomic # 6 Polarization: -15.47 SS G_CDS: 5.75 Total: -9.73 kcal Atomic # 7 Polarization: -129.57 SS G_CDS: -3.94 Total: -133.50 kcal Atomic # 8 Polarization: -94.09 SS G_CDS: -6.22 Total: -100.31 kcal Atomic # 14 Polarization: 42.43 SS G_CDS: 2.03 Total: 44.45 kcal Atomic # 16 Polarization: 100.35 SS G_CDS: -0.34 Total: 100.00 kcal Total: -84.85 -3.16 -88.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001771771458.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.631 kcal (2) G-P(sol) polarization free energy of solvation -84.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds