Wall clock time and date at job start Tue Mar 31 2020 18:42:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47688 * 2 1 4 4 C 1.50698 * 109.47487 * 120.00867 * 2 1 3 5 5 H 1.07992 * 120.00339 * 119.99644 * 4 2 1 6 6 C 1.37874 * 119.99637 * 299.99880 * 4 2 1 7 7 N 1.31512 * 119.99930 * 179.97438 * 6 4 2 8 8 Si 1.86804 * 120.00118 * 359.97438 * 6 4 2 9 9 H 1.48503 * 109.46929 * 90.00190 * 8 6 4 10 10 H 1.48496 * 109.47138 * 209.99954 * 8 6 4 11 11 H 1.48502 * 109.46995 * 330.00364 * 8 6 4 12 12 N 1.46504 * 109.46920 * 240.00540 * 2 1 3 13 13 C 1.46495 * 119.99893 * 300.00154 * 12 2 1 14 14 S 1.65606 * 119.99992 * 120.00004 * 12 2 1 15 15 O 1.42100 * 106.39948 * 156.45907 * 14 12 2 16 16 O 1.42103 * 106.39949 * 23.54020 * 14 12 2 17 17 N 1.65597 * 107.21744 * 270.00010 * 14 12 2 18 18 C 1.46506 * 120.00079 * 65.00334 * 17 14 12 19 19 C 1.52996 * 109.47045 * 164.72323 * 18 17 14 20 20 H 1.08996 * 109.47715 * 60.00141 * 19 18 17 21 21 O 1.42900 * 109.46947 * 299.99514 * 19 18 17 22 22 C 1.53006 * 109.46686 * 179.97438 * 19 18 17 23 23 N 1.46503 * 109.46990 * 184.99923 * 22 19 18 24 24 C 1.35305 * 125.86881 * 124.99813 * 23 22 19 25 25 C 1.35352 * 106.17571 * 179.97438 * 24 23 22 26 26 N 1.33772 * 106.49788 * 0.02562 * 25 24 23 27 27 N 1.28641 * 108.88282 * 359.72570 * 26 25 24 28 28 H 1.09000 * 109.46786 * 299.99712 * 1 2 3 29 29 H 1.09006 * 109.47231 * 59.99186 * 1 2 3 30 30 H 1.08993 * 109.47655 * 179.97438 * 1 2 3 31 31 H 0.97001 * 120.00031 * 180.02562 * 7 6 4 32 32 H 1.09001 * 109.47283 * 269.99546 * 13 12 2 33 33 H 1.08994 * 109.47246 * 30.00211 * 13 12 2 34 34 H 1.09003 * 109.47162 * 150.00220 * 13 12 2 35 35 H 0.97005 * 120.00050 * 244.72355 * 17 14 12 36 36 H 1.08999 * 109.46682 * 284.72550 * 18 17 14 37 37 H 1.09000 * 109.47243 * 44.71866 * 18 17 14 38 38 H 0.96699 * 114.00258 * 300.00210 * 21 19 18 39 39 H 1.08993 * 109.47005 * 305.00027 * 22 19 18 40 40 H 1.08999 * 109.46895 * 65.00510 * 22 19 18 41 41 H 1.07995 * 126.91314 * 0.02562 * 24 23 22 42 42 H 1.07999 * 126.75256 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7106 1.2303 5 1 2.6532 -1.5886 1.1311 6 6 1.6993 -0.2396 2.4826 7 7 2.1374 -0.8600 3.5563 8 14 0.6260 1.2796 2.6542 9 1 -0.8020 0.8742 2.6994 10 1 0.9773 1.9949 3.9072 11 1 0.8492 2.1771 1.4924 12 7 2.0183 -0.6905 -1.1963 13 6 1.6643 -2.0930 -1.4282 14 16 2.9704 0.1144 -2.2863 15 8 3.7117 -0.8787 -2.9816 16 8 3.5794 1.1831 -1.5748 17 7 1.9606 0.8093 -3.3998 18 6 1.0291 1.8622 -2.9873 19 6 0.4999 2.5886 -4.2255 20 1 -0.0173 1.8781 -4.8703 21 8 1.5922 3.1717 -4.9388 22 6 -0.4735 3.6877 -3.7947 23 7 -1.0708 4.3039 -4.9821 24 6 -2.3952 4.4224 -5.2325 25 6 -2.4984 5.0482 -6.4282 26 7 -1.2485 5.2784 -6.8456 27 7 -0.4259 4.8303 -5.9638 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5140 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.9027 -0.5289 4.4374 32 1 2.4156 -2.7376 -0.9720 33 1 0.6903 -2.3000 -0.9849 34 1 1.6237 -2.2850 -2.5004 35 1 1.9888 0.5222 -4.3259 36 1 0.1960 1.4174 -2.4431 37 1 1.5462 2.5727 -2.3425 38 1 2.0986 3.8156 -4.4250 39 1 -1.2593 3.2550 -3.1756 40 1 0.0635 4.4451 -3.2236 41 1 -3.2068 4.0861 -4.6043 42 1 -3.4104 5.3096 -6.9442 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001771771466.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:42:06 Heat of formation + Delta-G solvation = -7.414768 kcal Electronic energy + Delta-G solvation = -27725.488548 eV Core-core repulsion = 23677.928372 eV Total energy + Delta-G solvation = -4047.560176 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 333.130 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.47892 -38.66608 -36.91022 -36.53399 -35.42558 -34.76526 -34.45565 -32.60459 -31.26003 -30.38974 -30.16991 -26.39977 -25.93917 -25.15661 -23.11539 -22.68147 -21.75084 -21.03820 -19.05583 -18.34415 -17.54276 -17.30599 -17.22861 -16.55844 -16.22544 -16.11996 -15.64665 -15.22971 -15.20009 -14.77336 -14.40361 -14.09214 -13.80532 -13.58478 -13.37403 -12.93166 -12.76785 -12.43100 -12.31625 -12.03699 -11.96611 -11.86135 -11.68014 -11.63776 -11.60226 -11.33531 -11.19769 -11.14352 -10.85134 -10.58462 -10.30206 -10.19797 -9.73516 -9.64228 -9.59338 -9.51199 -8.74623 -8.25655 -6.22250 -4.23432 0.92796 1.34118 1.96963 2.35879 3.09390 3.17519 3.21868 3.25765 3.72218 3.90524 3.97675 4.09827 4.22911 4.28330 4.37593 4.56668 4.75296 4.76552 4.83779 4.94930 5.05193 5.14851 5.35229 5.38218 5.44887 5.68671 5.87549 5.89946 6.01918 6.09107 6.19020 6.24771 6.30433 6.46354 6.63048 6.91112 7.14331 7.25852 7.29719 7.50908 8.28843 8.36837 8.82953 9.36550 10.90923 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.014251 B = 0.003663 C = 0.003141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1964.253458 B = 7642.283243 C = 8911.365128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.238 3.762 3 H 0.056 0.944 4 C -0.524 4.524 5 H 0.082 0.918 6 C 0.074 3.926 7 N -0.892 5.892 8 Si 0.883 3.117 9 H -0.277 1.277 10 H -0.293 1.293 11 H -0.265 1.265 12 N -0.985 5.985 13 C 0.109 3.891 14 S 2.782 3.218 15 O -0.986 6.986 16 O -0.973 6.973 17 N -1.126 6.126 18 C 0.086 3.914 19 C 0.095 3.905 20 H 0.112 0.888 21 O -0.535 6.535 22 C 0.077 3.923 23 N -0.288 5.288 24 C -0.057 4.057 25 C -0.054 4.054 26 N -0.279 5.279 27 N -0.059 5.059 28 H 0.050 0.950 29 H 0.030 0.970 30 H 0.062 0.938 31 H 0.266 0.734 32 H 0.055 0.945 33 H 0.072 0.928 34 H 0.052 0.948 35 H 0.415 0.585 36 H 0.081 0.919 37 H 0.088 0.912 38 H 0.381 0.619 39 H 0.121 0.879 40 H 0.110 0.890 41 H 0.190 0.810 42 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.707 7.508 -14.227 19.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.134 3.866 3 H 0.074 0.926 4 C -0.563 4.563 5 H 0.101 0.899 6 C -0.130 4.130 7 N -0.529 5.529 8 Si 0.713 3.287 9 H -0.204 1.204 10 H -0.220 1.220 11 H -0.191 1.191 12 N -0.827 5.827 13 C -0.037 4.037 14 S 2.791 3.209 15 O -0.970 6.970 16 O -0.956 6.956 17 N -0.885 5.885 18 C -0.042 4.042 19 C 0.033 3.967 20 H 0.130 0.870 21 O -0.340 6.340 22 C -0.045 4.045 23 N -0.082 5.082 24 C -0.207 4.207 25 C -0.211 4.211 26 N -0.145 5.145 27 N -0.039 5.039 28 H 0.069 0.931 29 H 0.049 0.951 30 H 0.081 0.919 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.091 0.909 34 H 0.070 0.930 35 H 0.249 0.751 36 H 0.099 0.901 37 H 0.106 0.894 38 H 0.229 0.771 39 H 0.139 0.861 40 H 0.128 0.872 41 H 0.207 0.793 42 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -9.552 7.545 -14.860 19.209 hybrid contribution -2.133 0.568 1.093 2.463 sum -11.684 8.113 -13.766 19.795 Atomic orbital electron populations 1.22573 0.99300 1.01694 0.98788 1.19091 0.90198 0.93616 0.83735 0.92619 1.21143 1.32646 1.14384 0.88133 0.89949 1.24929 0.95774 0.96552 0.95715 1.69868 1.44989 1.40080 0.98012 0.86943 0.80430 0.83786 0.77566 1.20394 1.22011 1.19057 1.57458 1.70177 1.20199 1.34856 1.21193 1.01969 0.81511 0.99011 1.01939 0.73364 0.73224 0.72402 1.93579 1.68997 1.59877 1.74555 1.93596 1.73561 1.55999 1.72447 1.56069 1.57109 1.50884 1.24448 1.21883 0.94562 0.91185 0.96540 1.22326 0.87434 0.92802 0.94119 0.86995 1.86709 1.43664 1.61101 1.42488 1.22957 0.99991 0.97820 0.83774 1.47391 1.05409 1.38480 1.16910 1.23737 0.87366 1.08163 1.01452 1.23628 0.97605 1.04307 0.95579 1.75183 1.00072 1.18198 1.21087 1.78501 1.20952 1.10962 0.93464 0.93110 0.95087 0.91945 0.92355 0.92676 0.90904 0.92957 0.75135 0.90073 0.89415 0.77090 0.86064 0.87171 0.79321 0.79506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.88 8.65 37.16 0.32 -2.56 16 2 C 0.24 4.97 2.21 -69.08 -0.15 4.82 16 3 H 0.06 1.22 5.97 -51.93 -0.31 0.91 16 4 C -0.52 -13.66 8.95 -34.44 -0.31 -13.97 16 5 H 0.08 2.37 7.89 -52.49 -0.41 1.96 16 6 C 0.07 1.98 5.45 -17.82 -0.10 1.89 16 7 N -0.89 -25.92 13.96 55.43 0.77 -25.15 16 8 Si 0.88 19.84 24.37 -169.99 -4.14 15.70 16 9 H -0.28 -5.88 6.87 56.52 0.39 -5.49 16 10 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 11 H -0.27 -5.50 6.53 56.52 0.37 -5.14 16 12 N -0.98 -17.86 3.12 -115.86 -0.36 -18.23 16 13 C 0.11 1.75 9.53 59.84 0.57 2.32 16 14 S 2.78 47.92 6.10 -107.50 -0.66 47.26 16 15 O -0.99 -19.09 17.21 -57.17 -0.98 -20.08 16 16 O -0.97 -20.06 16.17 -57.17 -0.92 -20.99 16 17 N -1.13 -13.27 5.92 -10.61 -0.06 -13.33 16 18 C 0.09 0.80 5.91 -4.04 -0.02 0.78 16 19 C 0.10 0.73 3.25 -26.73 -0.09 0.64 16 20 H 0.11 0.86 8.14 -51.93 -0.42 0.44 16 21 O -0.53 -5.22 12.24 -35.23 -0.43 -5.65 16 22 C 0.08 0.45 6.14 -4.04 -0.02 0.43 16 23 N -0.29 -2.51 3.44 -61.26 -0.21 -2.72 16 24 C -0.06 -0.40 11.57 -17.05 -0.20 -0.59 16 25 C -0.05 -0.47 12.05 -17.74 -0.21 -0.69 16 26 N -0.28 -3.53 12.41 30.24 0.38 -3.16 16 27 N -0.06 -0.72 12.10 60.35 0.73 0.01 16 28 H 0.05 0.95 3.27 -51.93 -0.17 0.78 16 29 H 0.03 0.40 6.19 -51.93 -0.32 0.08 16 30 H 0.06 1.06 6.66 -51.93 -0.35 0.71 16 31 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 32 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.07 1.09 6.43 -51.93 -0.33 0.75 16 34 H 0.05 0.68 7.79 -51.93 -0.40 0.28 16 35 H 0.42 4.27 8.65 -34.47 -0.30 3.97 16 36 H 0.08 0.66 6.19 -51.93 -0.32 0.34 16 37 H 0.09 0.85 7.75 -51.93 -0.40 0.45 16 38 H 0.38 2.81 9.05 45.56 0.41 3.22 16 39 H 0.12 0.35 8.07 -51.93 -0.42 -0.06 16 40 H 0.11 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.19 0.55 8.06 -52.49 -0.42 0.13 16 42 H 0.19 0.99 8.06 -52.49 -0.42 0.57 16 LS Contribution 354.01 15.07 5.33 5.33 Total: -1.00 -37.44 354.01 -5.40 -42.84 By element: Atomic # 1 Polarization: 9.71 SS G_CDS: -4.62 Total: 5.09 kcal Atomic # 6 Polarization: -6.72 SS G_CDS: -0.21 Total: -6.94 kcal Atomic # 7 Polarization: -63.82 SS G_CDS: 1.24 Total: -62.58 kcal Atomic # 8 Polarization: -44.37 SS G_CDS: -2.34 Total: -46.71 kcal Atomic # 14 Polarization: 19.84 SS G_CDS: -4.14 Total: 15.70 kcal Atomic # 16 Polarization: 47.92 SS G_CDS: -0.66 Total: 47.26 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -37.44 -5.40 -42.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001771771466.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.423 kcal (2) G-P(sol) polarization free energy of solvation -37.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds