Wall clock time and date at job start Tue Mar 31 2020 18:42:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47688 * 2 1 4 4 C 1.50698 * 109.47487 * 120.00867 * 2 1 3 5 5 H 1.07992 * 120.00339 * 119.99644 * 4 2 1 6 6 C 1.37874 * 119.99637 * 299.99880 * 4 2 1 7 7 N 1.31512 * 119.99930 * 179.97438 * 6 4 2 8 8 Si 1.86804 * 120.00118 * 359.97438 * 6 4 2 9 9 H 1.48503 * 109.46929 * 90.00190 * 8 6 4 10 10 H 1.48496 * 109.47138 * 209.99954 * 8 6 4 11 11 H 1.48502 * 109.46995 * 330.00364 * 8 6 4 12 12 N 1.46504 * 109.46920 * 240.00540 * 2 1 3 13 13 C 1.46495 * 119.99893 * 300.00154 * 12 2 1 14 14 S 1.65606 * 119.99992 * 120.00004 * 12 2 1 15 15 O 1.42100 * 106.39948 * 156.45907 * 14 12 2 16 16 O 1.42103 * 106.39949 * 23.54020 * 14 12 2 17 17 N 1.65597 * 107.21744 * 270.00010 * 14 12 2 18 18 C 1.46506 * 120.00079 * 65.00334 * 17 14 12 19 19 C 1.52996 * 109.47045 * 164.72323 * 18 17 14 20 20 H 1.08996 * 109.47715 * 60.00141 * 19 18 17 21 21 O 1.42900 * 109.46947 * 299.99514 * 19 18 17 22 22 C 1.53006 * 109.46686 * 179.97438 * 19 18 17 23 23 N 1.46503 * 109.46990 * 184.99923 * 22 19 18 24 24 C 1.35305 * 125.86881 * 124.99813 * 23 22 19 25 25 C 1.35352 * 106.17571 * 179.97438 * 24 23 22 26 26 N 1.33772 * 106.49788 * 0.02562 * 25 24 23 27 27 N 1.28641 * 108.88282 * 359.72570 * 26 25 24 28 28 H 1.09000 * 109.46786 * 299.99712 * 1 2 3 29 29 H 1.09006 * 109.47231 * 59.99186 * 1 2 3 30 30 H 1.08993 * 109.47655 * 179.97438 * 1 2 3 31 31 H 0.97001 * 120.00031 * 180.02562 * 7 6 4 32 32 H 1.09001 * 109.47283 * 269.99546 * 13 12 2 33 33 H 1.08994 * 109.47246 * 30.00211 * 13 12 2 34 34 H 1.09003 * 109.47162 * 150.00220 * 13 12 2 35 35 H 0.97005 * 120.00050 * 244.72355 * 17 14 12 36 36 H 1.08999 * 109.46682 * 284.72550 * 18 17 14 37 37 H 1.09000 * 109.47243 * 44.71866 * 18 17 14 38 38 H 0.96699 * 114.00258 * 300.00210 * 21 19 18 39 39 H 1.08993 * 109.47005 * 305.00027 * 22 19 18 40 40 H 1.08999 * 109.46895 * 65.00510 * 22 19 18 41 41 H 1.07995 * 126.91314 * 0.02562 * 24 23 22 42 42 H 1.07999 * 126.75256 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7106 1.2303 5 1 2.6532 -1.5886 1.1311 6 6 1.6993 -0.2396 2.4826 7 7 2.1374 -0.8600 3.5563 8 14 0.6260 1.2796 2.6542 9 1 -0.8020 0.8742 2.6994 10 1 0.9773 1.9949 3.9072 11 1 0.8492 2.1771 1.4924 12 7 2.0183 -0.6905 -1.1963 13 6 1.6643 -2.0930 -1.4282 14 16 2.9704 0.1144 -2.2863 15 8 3.7117 -0.8787 -2.9816 16 8 3.5794 1.1831 -1.5748 17 7 1.9606 0.8093 -3.3998 18 6 1.0291 1.8622 -2.9873 19 6 0.4999 2.5886 -4.2255 20 1 -0.0173 1.8781 -4.8703 21 8 1.5922 3.1717 -4.9388 22 6 -0.4735 3.6877 -3.7947 23 7 -1.0708 4.3039 -4.9821 24 6 -2.3952 4.4224 -5.2325 25 6 -2.4984 5.0482 -6.4282 26 7 -1.2485 5.2784 -6.8456 27 7 -0.4259 4.8303 -5.9638 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5140 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.9027 -0.5289 4.4374 32 1 2.4156 -2.7376 -0.9720 33 1 0.6903 -2.3000 -0.9849 34 1 1.6237 -2.2850 -2.5004 35 1 1.9888 0.5222 -4.3259 36 1 0.1960 1.4174 -2.4431 37 1 1.5462 2.5727 -2.3425 38 1 2.0986 3.8156 -4.4250 39 1 -1.2593 3.2550 -3.1756 40 1 0.0635 4.4451 -3.2236 41 1 -3.2068 4.0861 -4.6043 42 1 -3.4104 5.3096 -6.9442 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001771771466.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:42:05 Heat of formation + Delta-G solvation = -43.179971 kcal Electronic energy + Delta-G solvation = -27727.039443 eV Core-core repulsion = 23677.928372 eV Total energy + Delta-G solvation = -4049.111072 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 333.130 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -44.08579 -39.32752 -38.38912 -38.04241 -36.91964 -35.55544 -35.16552 -34.50661 -31.84607 -31.76596 -31.04405 -27.32697 -27.10564 -26.92647 -23.75790 -23.29297 -22.67692 -22.31285 -20.30625 -19.08418 -18.88903 -18.82413 -18.12901 -17.81063 -17.32662 -16.93804 -16.72487 -16.41621 -15.80213 -15.70171 -15.39017 -15.15807 -15.01753 -14.73345 -14.50908 -14.15914 -14.07122 -13.79678 -13.45307 -13.32361 -13.24630 -13.10811 -13.08832 -12.91029 -12.73451 -12.57358 -12.26594 -12.11408 -11.95283 -11.77661 -11.50520 -11.40939 -11.26716 -10.85947 -10.73032 -10.48038 -10.23248 -9.76868 -8.26121 -6.32661 -0.41947 0.77338 1.33577 1.43579 1.49209 1.52822 1.72030 2.01536 2.36600 2.58598 3.09002 3.21413 3.38997 3.49544 3.60921 3.72858 3.85717 3.98858 4.12997 4.34253 4.38319 4.39856 4.42217 4.50637 4.64831 4.71003 4.74166 4.80553 4.85129 4.96108 4.99385 5.13929 5.27073 5.34392 5.53864 5.65377 5.74583 5.82121 6.11284 6.37141 6.73027 6.73078 7.32402 7.64313 8.91079 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.014251 B = 0.003663 C = 0.003141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1964.253458 B = 7642.283243 C = 8911.365128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.240 3.760 3 H 0.052 0.948 4 C -0.530 4.530 5 H 0.032 0.968 6 C 0.007 3.993 7 N -0.951 5.951 8 Si 0.946 3.054 9 H -0.250 1.250 10 H -0.307 1.307 11 H -0.231 1.231 12 N -0.991 5.991 13 C 0.104 3.896 14 S 2.799 3.201 15 O -1.014 7.014 16 O -1.011 7.011 17 N -1.107 6.107 18 C 0.077 3.923 19 C 0.104 3.896 20 H 0.114 0.886 21 O -0.559 6.559 22 C 0.072 3.928 23 N -0.286 5.286 24 C -0.039 4.039 25 C -0.072 4.072 26 N -0.326 5.326 27 N -0.104 5.104 28 H 0.044 0.956 29 H 0.085 0.915 30 H 0.064 0.936 31 H 0.265 0.735 32 H 0.027 0.973 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.425 0.575 36 H 0.106 0.894 37 H 0.086 0.914 38 H 0.388 0.612 39 H 0.163 0.837 40 H 0.121 0.879 41 H 0.236 0.764 42 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.386 8.981 -15.317 23.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.134 3.866 3 H 0.070 0.930 4 C -0.570 4.570 5 H 0.050 0.950 6 C -0.190 4.190 7 N -0.591 5.591 8 Si 0.771 3.229 9 H -0.175 1.175 10 H -0.235 1.235 11 H -0.154 1.154 12 N -0.832 5.832 13 C -0.041 4.041 14 S 2.808 3.192 15 O -0.998 6.998 16 O -0.994 6.994 17 N -0.871 5.871 18 C -0.050 4.050 19 C 0.042 3.958 20 H 0.132 0.868 21 O -0.366 6.366 22 C -0.049 4.049 23 N -0.080 5.080 24 C -0.189 4.189 25 C -0.230 4.230 26 N -0.192 5.192 27 N -0.084 5.084 28 H 0.062 0.938 29 H 0.104 0.896 30 H 0.083 0.917 31 H 0.074 0.926 32 H 0.046 0.954 33 H 0.104 0.896 34 H 0.103 0.897 35 H 0.261 0.739 36 H 0.124 0.876 37 H 0.104 0.896 38 H 0.237 0.763 39 H 0.181 0.819 40 H 0.139 0.861 41 H 0.252 0.748 42 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -13.210 9.003 -15.994 22.613 hybrid contribution -0.935 0.015 1.387 1.673 sum -14.145 9.018 -14.606 22.243 Atomic orbital electron populations 1.22450 0.95679 1.02787 1.01053 1.18928 0.92862 0.92587 0.82232 0.93013 1.21511 1.31526 1.13029 0.90907 0.94955 1.25946 0.97591 1.00378 0.95107 1.70066 1.47612 1.42705 0.98728 0.85935 0.79491 0.79529 0.77985 1.17465 1.23543 1.15422 1.57386 1.70169 1.21083 1.34566 1.21334 1.01655 0.80114 1.01029 1.01157 0.73313 0.72437 0.72294 1.93534 1.70353 1.60953 1.74946 1.93546 1.74909 1.57149 1.73786 1.55495 1.56902 1.50952 1.23704 1.22200 0.94560 0.90591 0.97612 1.22275 0.87183 0.93270 0.93086 0.86849 1.86684 1.44659 1.61522 1.43685 1.23223 1.01048 0.97508 0.83117 1.47626 1.06091 1.37562 1.16712 1.24455 0.87555 1.06002 1.00928 1.24226 0.97302 1.04695 0.96745 1.75112 1.01924 1.19685 1.22458 1.78440 1.21913 1.13150 0.94875 0.93778 0.89633 0.91709 0.92563 0.95428 0.89586 0.89671 0.73869 0.87645 0.89577 0.76285 0.81906 0.86136 0.74761 0.77133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.88 8.65 71.98 0.62 -4.26 16 2 C 0.24 9.52 2.21 44.24 0.10 9.62 16 3 H 0.05 2.12 5.97 -2.39 -0.01 2.11 16 4 C -0.53 -28.19 8.95 25.60 0.23 -27.96 16 5 H 0.03 1.97 7.89 -2.91 -0.02 1.95 16 6 C 0.01 0.39 5.45 84.65 0.46 0.85 16 7 N -0.95 -57.44 13.96 21.45 0.30 -57.14 16 8 Si 0.95 39.42 24.37 68.60 1.67 41.09 16 9 H -0.25 -9.27 6.87 99.48 0.68 -8.58 16 10 H -0.31 -13.43 7.11 99.48 0.71 -12.72 16 11 H -0.23 -8.28 6.53 99.48 0.65 -7.63 16 12 N -0.99 -34.50 3.12 -520.46 -1.62 -36.13 16 13 C 0.10 3.22 9.53 127.77 1.22 4.43 16 14 S 2.80 92.93 6.10 -56.49 -0.34 92.58 16 15 O -1.01 -38.79 17.21 -128.00 -2.20 -40.99 16 16 O -1.01 -41.08 16.17 -128.00 -2.07 -43.15 16 17 N -1.11 -22.85 5.92 -187.48 -1.11 -23.96 16 18 C 0.08 1.10 5.91 86.38 0.51 1.62 16 19 C 0.10 1.20 3.25 30.60 0.10 1.30 16 20 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 21 O -0.56 -9.86 12.24 -148.98 -1.82 -11.69 16 22 C 0.07 0.51 6.14 86.38 0.53 1.04 16 23 N -0.29 -4.00 3.44 -347.73 -1.20 -5.20 16 24 C -0.04 -0.37 11.57 83.49 0.97 0.59 16 25 C -0.07 -1.08 12.05 83.73 1.01 -0.07 16 26 N -0.33 -7.99 12.41 -58.26 -0.72 -8.72 16 27 N -0.10 -2.43 12.10 37.02 0.45 -1.98 16 28 H 0.04 1.42 3.27 -2.39 -0.01 1.41 16 29 H 0.09 1.65 6.19 -2.38 -0.01 1.63 16 30 H 0.06 1.94 6.66 -2.39 -0.02 1.92 16 31 H 0.27 15.02 8.31 -92.71 -0.77 14.25 16 32 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.09 2.40 6.43 -2.39 -0.02 2.39 16 34 H 0.08 2.04 7.79 -2.39 -0.02 2.02 16 35 H 0.42 7.55 8.65 -96.74 -0.84 6.72 16 36 H 0.11 1.02 6.19 -2.39 -0.01 1.01 16 37 H 0.09 1.33 7.75 -2.39 -0.02 1.31 16 38 H 0.39 5.20 9.05 -74.06 -0.67 4.53 16 39 H 0.16 -0.22 8.07 -2.39 -0.02 -0.24 16 40 H 0.12 0.64 8.14 -2.39 -0.02 0.63 16 41 H 0.24 -0.17 8.06 -2.91 -0.02 -0.19 16 42 H 0.21 1.69 8.06 -2.91 -0.02 1.66 16 Total: -1.00 -88.29 354.01 -3.43 -91.72 By element: Atomic # 1 Polarization: 16.90 SS G_CDS: -0.51 Total: 16.40 kcal Atomic # 6 Polarization: -18.58 SS G_CDS: 5.74 Total: -12.84 kcal Atomic # 7 Polarization: -129.22 SS G_CDS: -3.90 Total: -133.13 kcal Atomic # 8 Polarization: -89.74 SS G_CDS: -6.10 Total: -95.83 kcal Atomic # 14 Polarization: 39.42 SS G_CDS: 1.67 Total: 41.09 kcal Atomic # 16 Polarization: 92.93 SS G_CDS: -0.34 Total: 92.58 kcal Total: -88.29 -3.43 -91.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001771771466.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.539 kcal (2) G-P(sol) polarization free energy of solvation -88.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds