Wall clock time and date at job start Tue Mar 31 2020 18:42:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46497 * 109.47145 * 240.00568 * 2 1 3 13 13 C 1.46503 * 119.99817 * 300.00252 * 12 2 1 14 14 S 1.65597 * 120.00227 * 119.99787 * 12 2 1 15 15 O 1.42100 * 106.40587 * 203.53991 * 14 12 2 16 16 O 1.42101 * 106.40301 * 336.46074 * 14 12 2 17 17 N 1.65598 * 107.21541 * 89.99985 * 14 12 2 18 18 C 1.46501 * 120.00034 * 65.00515 * 17 14 12 19 19 C 1.53000 * 109.47266 * 164.99831 * 18 17 14 20 20 H 1.08998 * 109.47353 * 305.00043 * 19 18 17 21 21 O 1.42902 * 109.47198 * 64.99986 * 19 18 17 22 22 C 1.52998 * 109.47227 * 184.99441 * 19 18 17 23 23 N 1.46508 * 109.47249 * 174.99912 * 22 19 18 24 24 C 1.35307 * 125.86804 * 124.99967 * 23 22 19 25 25 C 1.35350 * 106.17578 * 180.02562 * 24 23 22 26 26 N 1.33773 * 106.49329 * 0.02562 * 25 24 23 27 27 N 1.28626 * 108.88702 * 359.73661 * 26 25 24 28 28 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 30 30 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 31 31 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 32 32 H 1.08994 * 109.47665 * 90.00431 * 13 12 2 33 33 H 1.09008 * 109.46786 * 210.00039 * 13 12 2 34 34 H 1.08997 * 109.47360 * 329.99480 * 13 12 2 35 35 H 0.96998 * 120.00285 * 244.99932 * 17 14 12 36 36 H 1.09001 * 109.46915 * 284.99450 * 18 17 14 37 37 H 1.08992 * 109.47300 * 44.99797 * 18 17 14 38 38 H 0.96697 * 114.00490 * 59.99469 * 21 19 18 39 39 H 1.08997 * 109.47185 * 295.00015 * 22 19 18 40 40 H 1.08999 * 109.46708 * 55.00335 * 22 19 18 41 41 H 1.08004 * 126.91176 * 0.02732 * 24 23 22 42 42 H 1.07998 * 126.75045 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.8269 -0.4203 5.2204 10 1 1.8258 -2.5205 4.0075 11 1 3.8063 -1.1213 4.0080 12 7 2.0183 -0.6905 -1.1962 13 6 1.6643 -2.0930 -1.4282 14 16 2.9703 0.1144 -2.2862 15 8 2.8227 -0.5643 -3.5260 16 8 2.6903 1.4975 -2.1192 17 7 4.5436 -0.1041 -1.8180 18 6 5.1357 -1.4439 -1.8417 19 6 6.6577 -1.3310 -1.7337 20 1 7.0304 -0.6772 -2.5221 21 8 7.0057 -0.7864 -0.4591 22 6 7.2840 -2.7189 -1.8833 23 7 8.7439 -2.5967 -1.8995 24 6 9.6027 -3.2428 -1.0775 25 6 10.8438 -2.8399 -1.4368 26 7 10.6856 -1.9779 -2.4475 27 7 9.4301 -1.8595 -2.7010 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5139 -0.8900 31 1 0.7089 1.1611 3.4845 32 1 0.7376 -2.1442 -1.9996 33 1 2.4629 -2.5817 -1.9866 34 1 1.5295 -2.5968 -0.4711 35 1 5.0733 0.6551 -1.5281 36 1 4.7540 -2.0247 -1.0019 37 1 4.8736 -1.9405 -2.7759 38 1 6.7050 -1.3175 0.2909 39 1 6.9812 -3.3464 -1.0451 40 1 6.9468 -3.1709 -2.8161 41 1 9.3488 -3.9398 -0.2925 42 1 11.7781 -3.1522 -0.9941 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001771771475.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:42:10 Heat of formation + Delta-G solvation = -21.189147 kcal Electronic energy + Delta-G solvation = -27604.378020 eV Core-core repulsion = 23556.220542 eV Total energy + Delta-G solvation = -4048.157478 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 333.130 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.42917 -38.59925 -36.76548 -36.23970 -35.34206 -34.66574 -34.38274 -32.69328 -31.24158 -30.26246 -29.17470 -26.31249 -25.58728 -25.27020 -23.15780 -22.55471 -21.60747 -20.86063 -18.97359 -18.27644 -17.37216 -17.01684 -16.92424 -16.51168 -16.39439 -16.15052 -15.39883 -15.12760 -15.00008 -14.55900 -14.27398 -14.07003 -13.52920 -13.42221 -13.28963 -12.81114 -12.71046 -12.09288 -11.98295 -11.89324 -11.73664 -11.62214 -11.57846 -11.45774 -11.30693 -11.10434 -11.06835 -10.96305 -10.83479 -10.53051 -10.30414 -10.17736 -10.09713 -9.58839 -9.52505 -9.26970 -8.56704 -8.07375 -6.17704 -4.27123 1.11978 1.40132 2.03688 2.40806 3.16315 3.21566 3.24486 3.33779 3.81523 3.96747 4.05822 4.23302 4.26095 4.30247 4.50229 4.73026 4.78372 4.87226 4.99125 5.01201 5.12883 5.21944 5.39042 5.47756 5.67018 5.86330 5.94407 6.04512 6.22072 6.30469 6.55154 6.79443 6.80523 7.03537 7.12223 7.29031 7.43515 7.52644 7.70215 7.96464 8.16811 8.31616 8.74457 9.39128 10.87376 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.012306 B = 0.003785 C = 0.003121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2274.759443 B = 7395.810168 C = 8969.772481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.268 3.732 3 H 0.059 0.941 4 C -0.528 4.528 5 H 0.061 0.939 6 C 0.065 3.935 7 N -0.885 5.885 8 Si 0.898 3.102 9 H -0.287 1.287 10 H -0.278 1.278 11 H -0.278 1.278 12 N -0.990 5.990 13 C 0.105 3.895 14 S 2.783 3.217 15 O -0.999 6.999 16 O -0.977 6.977 17 N -1.122 6.122 18 C 0.095 3.905 19 C 0.091 3.909 20 H 0.124 0.876 21 O -0.545 6.545 22 C 0.080 3.920 23 N -0.281 5.281 24 C -0.048 4.048 25 C -0.054 4.054 26 N -0.274 5.274 27 N -0.081 5.081 28 H 0.032 0.968 29 H 0.092 0.908 30 H 0.012 0.988 31 H 0.265 0.735 32 H 0.044 0.956 33 H 0.047 0.953 34 H 0.080 0.920 35 H 0.419 0.581 36 H 0.076 0.924 37 H 0.087 0.913 38 H 0.380 0.620 39 H 0.115 0.885 40 H 0.115 0.885 41 H 0.189 0.811 42 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.011 -11.425 -4.735 16.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.166 3.834 3 H 0.077 0.923 4 C -0.567 4.567 5 H 0.079 0.921 6 C -0.138 4.138 7 N -0.523 5.523 8 Si 0.726 3.274 9 H -0.212 1.212 10 H -0.203 1.203 11 H -0.203 1.203 12 N -0.833 5.833 13 C -0.041 4.041 14 S 2.792 3.208 15 O -0.982 6.982 16 O -0.961 6.961 17 N -0.881 5.881 18 C -0.034 4.034 19 C 0.029 3.971 20 H 0.141 0.859 21 O -0.351 6.351 22 C -0.043 4.043 23 N -0.075 5.075 24 C -0.199 4.199 25 C -0.212 4.212 26 N -0.139 5.139 27 N -0.061 5.061 28 H 0.051 0.949 29 H 0.111 0.889 30 H 0.031 0.969 31 H 0.075 0.925 32 H 0.062 0.938 33 H 0.066 0.934 34 H 0.098 0.902 35 H 0.253 0.747 36 H 0.094 0.906 37 H 0.105 0.895 38 H 0.229 0.771 39 H 0.134 0.866 40 H 0.133 0.867 41 H 0.206 0.794 42 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 10.700 -9.492 -6.966 15.910 hybrid contribution 0.282 -1.775 2.791 3.320 sum 10.982 -11.267 -4.176 16.278 Atomic orbital electron populations 1.22059 0.97960 0.99643 1.00817 1.18728 0.91882 0.92786 0.80051 0.92322 1.21278 1.32169 1.13102 0.90161 0.92105 1.24934 0.94937 0.94953 0.99001 1.69866 1.35926 1.22445 1.24024 0.86583 0.79015 0.79585 0.82249 1.21219 1.20338 1.20346 1.57724 1.64361 1.21338 1.39856 1.21208 0.99024 0.82101 1.01788 1.01813 0.72500 0.73214 0.73292 1.93541 1.85985 1.76446 1.42212 1.93608 1.83401 1.32357 1.86778 1.55947 1.32456 1.14246 1.85472 1.21732 0.92956 0.85534 1.03155 1.22464 0.93144 0.92909 0.88593 0.85850 1.86709 1.80801 1.53047 1.14507 1.22939 0.73863 1.00804 1.06664 1.47286 1.08813 1.28781 1.22593 1.23680 0.90281 1.04528 1.01387 1.23605 0.98536 1.00241 0.98778 1.75120 1.07656 1.16336 1.14836 1.78293 0.98621 1.14140 1.15034 0.94887 0.88910 0.96856 0.92480 0.93769 0.93436 0.90161 0.74701 0.90598 0.89491 0.77145 0.86638 0.86728 0.79350 0.79481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.33 8.97 37.16 0.33 -2.99 16 2 C 0.27 6.20 2.62 -69.09 -0.18 6.02 16 3 H 0.06 1.53 6.91 -51.93 -0.36 1.17 16 4 C -0.53 -12.59 7.99 -34.44 -0.28 -12.87 16 5 H 0.06 1.36 7.33 -52.49 -0.38 0.97 16 6 C 0.06 1.62 5.30 -17.82 -0.09 1.53 16 7 N -0.88 -23.52 11.32 55.43 0.63 -22.89 16 8 Si 0.90 19.20 29.54 -169.99 -5.02 14.18 16 9 H -0.29 -6.26 7.11 56.52 0.40 -5.86 16 10 H -0.28 -5.84 7.11 56.52 0.40 -5.43 16 11 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 12 N -0.99 -18.80 3.12 -115.85 -0.36 -19.16 16 13 C 0.11 1.66 9.28 59.85 0.56 2.21 16 14 S 2.78 50.71 6.09 -107.50 -0.66 50.06 16 15 O -1.00 -18.94 16.68 -57.17 -0.95 -19.89 16 16 O -0.98 -21.63 16.70 -57.17 -0.95 -22.59 16 17 N -1.12 -15.89 6.02 -10.61 -0.06 -15.96 16 18 C 0.09 0.97 5.88 -4.04 -0.02 0.94 16 19 C 0.09 0.83 3.14 -26.73 -0.08 0.75 16 20 H 0.12 1.34 8.00 -51.93 -0.42 0.92 16 21 O -0.55 -5.86 13.09 -35.23 -0.46 -6.32 16 22 C 0.08 0.51 6.09 -4.04 -0.02 0.49 16 23 N -0.28 -2.67 3.39 -61.26 -0.21 -2.88 16 24 C -0.05 -0.37 11.57 -17.05 -0.20 -0.57 16 25 C -0.05 -0.51 12.05 -17.74 -0.21 -0.73 16 26 N -0.27 -3.66 12.41 30.23 0.38 -3.29 16 27 N -0.08 -1.06 12.83 60.35 0.77 -0.29 16 28 H 0.03 0.70 7.67 -51.93 -0.40 0.30 16 29 H 0.09 2.33 6.07 -51.93 -0.32 2.01 16 30 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.27 6.76 8.31 -40.82 -0.34 6.43 16 32 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.05 0.60 7.79 -51.92 -0.40 0.20 16 34 H 0.08 1.28 7.02 -51.93 -0.36 0.91 16 35 H 0.42 5.85 8.51 -34.47 -0.29 5.56 16 36 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.09 0.80 7.75 -51.93 -0.40 0.39 16 38 H 0.38 2.92 9.05 45.56 0.41 3.34 16 39 H 0.12 0.37 8.07 -51.93 -0.42 -0.05 16 40 H 0.11 0.56 8.14 -51.93 -0.42 0.13 16 41 H 0.19 0.68 8.06 -52.48 -0.42 0.26 16 42 H 0.19 1.13 8.06 -52.49 -0.42 0.70 16 LS Contribution 366.58 15.07 5.52 5.52 Total: -1.00 -35.21 366.58 -6.60 -41.81 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: -5.02 Total: 6.91 kcal Atomic # 6 Polarization: -5.02 SS G_CDS: -0.21 Total: -5.22 kcal Atomic # 7 Polarization: -65.60 SS G_CDS: 1.14 Total: -64.46 kcal Atomic # 8 Polarization: -46.43 SS G_CDS: -2.37 Total: -48.80 kcal Atomic # 14 Polarization: 19.20 SS G_CDS: -5.02 Total: 14.18 kcal Atomic # 16 Polarization: 50.71 SS G_CDS: -0.66 Total: 50.06 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -35.21 -6.60 -41.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001771771475.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.624 kcal (2) G-P(sol) polarization free energy of solvation -35.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds