Wall clock time and date at job start Tue Mar 31 2020 18:42:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46497 * 109.47145 * 240.00568 * 2 1 3 13 13 C 1.46503 * 119.99817 * 300.00252 * 12 2 1 14 14 S 1.65597 * 120.00227 * 119.99787 * 12 2 1 15 15 O 1.42100 * 106.40587 * 203.53991 * 14 12 2 16 16 O 1.42101 * 106.40301 * 336.46074 * 14 12 2 17 17 N 1.65598 * 107.21541 * 89.99985 * 14 12 2 18 18 C 1.46501 * 120.00034 * 65.00515 * 17 14 12 19 19 C 1.53000 * 109.47266 * 164.99831 * 18 17 14 20 20 H 1.08998 * 109.47353 * 305.00043 * 19 18 17 21 21 O 1.42902 * 109.47198 * 64.99986 * 19 18 17 22 22 C 1.52998 * 109.47227 * 184.99441 * 19 18 17 23 23 N 1.46508 * 109.47249 * 174.99912 * 22 19 18 24 24 C 1.35307 * 125.86804 * 124.99967 * 23 22 19 25 25 C 1.35350 * 106.17578 * 180.02562 * 24 23 22 26 26 N 1.33773 * 106.49329 * 0.02562 * 25 24 23 27 27 N 1.28626 * 108.88702 * 359.73661 * 26 25 24 28 28 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 30 30 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 31 31 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 32 32 H 1.08994 * 109.47665 * 90.00431 * 13 12 2 33 33 H 1.09008 * 109.46786 * 210.00039 * 13 12 2 34 34 H 1.08997 * 109.47360 * 329.99480 * 13 12 2 35 35 H 0.96998 * 120.00285 * 244.99932 * 17 14 12 36 36 H 1.09001 * 109.46915 * 284.99450 * 18 17 14 37 37 H 1.08992 * 109.47300 * 44.99797 * 18 17 14 38 38 H 0.96697 * 114.00490 * 59.99469 * 21 19 18 39 39 H 1.08997 * 109.47185 * 295.00015 * 22 19 18 40 40 H 1.08999 * 109.46708 * 55.00335 * 22 19 18 41 41 H 1.08004 * 126.91176 * 0.02732 * 24 23 22 42 42 H 1.07998 * 126.75045 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.8269 -0.4203 5.2204 10 1 1.8258 -2.5205 4.0075 11 1 3.8063 -1.1213 4.0080 12 7 2.0183 -0.6905 -1.1962 13 6 1.6643 -2.0930 -1.4282 14 16 2.9703 0.1144 -2.2862 15 8 2.8227 -0.5643 -3.5260 16 8 2.6903 1.4975 -2.1192 17 7 4.5436 -0.1041 -1.8180 18 6 5.1357 -1.4439 -1.8417 19 6 6.6577 -1.3310 -1.7337 20 1 7.0304 -0.6772 -2.5221 21 8 7.0057 -0.7864 -0.4591 22 6 7.2840 -2.7189 -1.8833 23 7 8.7439 -2.5967 -1.8995 24 6 9.6027 -3.2428 -1.0775 25 6 10.8438 -2.8399 -1.4368 26 7 10.6856 -1.9779 -2.4475 27 7 9.4301 -1.8595 -2.7010 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5139 -0.8900 31 1 0.7089 1.1611 3.4845 32 1 0.7376 -2.1442 -1.9996 33 1 2.4629 -2.5817 -1.9866 34 1 1.5295 -2.5968 -0.4711 35 1 5.0733 0.6551 -1.5281 36 1 4.7540 -2.0247 -1.0019 37 1 4.8736 -1.9405 -2.7759 38 1 6.7050 -1.3175 0.2909 39 1 6.9812 -3.3464 -1.0451 40 1 6.9468 -3.1709 -2.8161 41 1 9.3488 -3.9398 -0.2925 42 1 11.7781 -3.1522 -0.9941 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001771771475.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:42:09 Heat of formation + Delta-G solvation = -52.651326 kcal Electronic energy + Delta-G solvation = -27605.742322 eV Core-core repulsion = 23556.220542 eV Total energy + Delta-G solvation = -4049.521780 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 333.130 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -44.11913 -39.36280 -38.31708 -37.85610 -36.90301 -35.53012 -35.22515 -34.46735 -31.91262 -31.03355 -30.90266 -27.25877 -27.10057 -26.88263 -23.89350 -23.26208 -22.61728 -22.26651 -20.32275 -19.03760 -18.77968 -18.37774 -18.18993 -17.60893 -17.28916 -17.24606 -16.77002 -16.25186 -15.76153 -15.70501 -15.17481 -15.03409 -14.91996 -14.71893 -14.46314 -14.09320 -13.68189 -13.45297 -13.41079 -13.20318 -13.13903 -13.04969 -12.94601 -12.71753 -12.65628 -12.63758 -12.29829 -12.19564 -12.09189 -11.86873 -11.80632 -11.61161 -11.17852 -10.81726 -10.48543 -10.44399 -10.26334 -9.64083 -8.04754 -6.20165 -0.30306 0.74098 1.48115 1.51095 1.51802 1.59266 1.69325 2.03330 2.49619 2.63290 3.23318 3.24750 3.31410 3.51112 3.64819 3.75736 3.83236 4.12093 4.16284 4.33399 4.37570 4.39724 4.45883 4.73074 4.74564 4.84249 4.85938 4.98645 4.99589 5.07174 5.18538 5.31810 5.32912 5.64152 5.68753 5.72115 5.87425 6.04265 6.16319 6.31920 6.71971 6.89470 7.49958 7.58791 8.99942 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.012306 B = 0.003785 C = 0.003121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2274.759443 B = 7395.810168 C = 8969.772481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.274 3.726 3 H 0.020 0.980 4 C -0.525 4.525 5 H 0.080 0.920 6 C 0.012 3.988 7 N -0.923 5.923 8 Si 0.962 3.038 9 H -0.299 1.299 10 H -0.266 1.266 11 H -0.266 1.266 12 N -0.994 5.994 13 C 0.096 3.904 14 S 2.800 3.200 15 O -1.005 7.005 16 O -1.024 7.024 17 N -1.117 6.117 18 C 0.086 3.914 19 C 0.099 3.901 20 H 0.099 0.901 21 O -0.568 6.568 22 C 0.078 3.922 23 N -0.280 5.280 24 C -0.030 4.030 25 C -0.072 4.072 26 N -0.320 5.320 27 N -0.129 5.129 28 H 0.046 0.954 29 H 0.067 0.933 30 H 0.015 0.985 31 H 0.261 0.739 32 H 0.046 0.954 33 H 0.083 0.917 34 H 0.081 0.919 35 H 0.419 0.581 36 H 0.098 0.902 37 H 0.102 0.898 38 H 0.393 0.607 39 H 0.160 0.840 40 H 0.133 0.867 41 H 0.236 0.764 42 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.945 -14.916 -3.832 19.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.169 3.831 3 H 0.037 0.963 4 C -0.564 4.564 5 H 0.098 0.902 6 C -0.188 4.188 7 N -0.563 5.563 8 Si 0.788 3.212 9 H -0.225 1.225 10 H -0.191 1.191 11 H -0.191 1.191 12 N -0.836 5.836 13 C -0.049 4.049 14 S 2.809 3.191 15 O -0.988 6.988 16 O -1.009 7.009 17 N -0.879 5.879 18 C -0.041 4.041 19 C 0.037 3.963 20 H 0.117 0.883 21 O -0.376 6.376 22 C -0.043 4.043 23 N -0.073 5.073 24 C -0.182 4.182 25 C -0.230 4.230 26 N -0.185 5.185 27 N -0.109 5.109 28 H 0.065 0.935 29 H 0.086 0.914 30 H 0.034 0.966 31 H 0.070 0.930 32 H 0.065 0.935 33 H 0.102 0.898 34 H 0.100 0.900 35 H 0.254 0.746 36 H 0.116 0.884 37 H 0.121 0.879 38 H 0.244 0.756 39 H 0.177 0.823 40 H 0.151 0.849 41 H 0.253 0.747 42 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges 11.628 -13.011 -6.105 18.487 hybrid contribution 0.017 -0.734 2.486 2.592 sum 11.645 -13.745 -3.619 18.375 Atomic orbital electron populations 1.21961 0.98253 1.00090 0.99705 1.18368 0.91686 0.91369 0.81666 0.96260 1.21617 1.31468 1.13160 0.90140 0.90164 1.25769 0.95259 0.95587 1.02155 1.70039 1.37703 1.24292 1.24253 0.85550 0.78916 0.78637 0.78082 1.22550 1.19077 1.19085 1.57562 1.65039 1.22628 1.38372 1.21473 1.00686 0.80278 1.02487 1.01105 0.73086 0.71906 0.73031 1.93526 1.86551 1.76272 1.42477 1.93542 1.84611 1.35397 1.87301 1.55629 1.30818 1.16240 1.85212 1.22092 0.93579 0.83495 1.04930 1.22265 0.92319 0.94238 0.87465 0.88348 1.86689 1.81106 1.54284 1.15516 1.23194 0.72157 0.99374 1.09600 1.47539 1.09852 1.27970 1.21979 1.24419 0.89237 1.03620 1.00898 1.24230 1.00697 0.99804 0.98247 1.75046 1.08335 1.18208 1.16875 1.78229 0.98972 1.16480 1.17188 0.93508 0.91423 0.96620 0.92986 0.93522 0.89824 0.90030 0.74584 0.88442 0.87948 0.75617 0.82274 0.84936 0.74734 0.76984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.49 8.97 71.98 0.65 -5.84 16 2 C 0.27 12.63 2.62 44.24 0.12 12.74 16 3 H 0.02 1.05 6.91 -2.39 -0.02 1.04 16 4 C -0.52 -24.32 7.99 25.60 0.20 -24.11 16 5 H 0.08 3.33 7.33 -2.91 -0.02 3.30 16 6 C 0.01 0.57 5.30 84.66 0.45 1.02 16 7 N -0.92 -49.92 11.32 21.45 0.24 -49.67 16 8 Si 0.96 38.27 29.54 68.60 2.03 40.30 16 9 H -0.30 -12.42 7.11 99.48 0.71 -11.71 16 10 H -0.27 -10.00 7.11 99.48 0.71 -9.29 16 11 H -0.27 -9.98 7.11 99.48 0.71 -9.27 16 12 N -0.99 -36.41 3.12 -520.45 -1.62 -38.04 16 13 C 0.10 2.74 9.28 127.77 1.19 3.92 16 14 S 2.80 100.20 6.09 -56.49 -0.34 99.85 16 15 O -1.01 -36.54 16.68 -128.00 -2.14 -38.67 16 16 O -1.02 -46.55 16.70 -128.00 -2.14 -48.69 16 17 N -1.12 -30.24 6.02 -187.50 -1.13 -31.37 16 18 C 0.09 1.49 5.88 86.38 0.51 2.00 16 19 C 0.10 1.58 3.14 30.59 0.10 1.68 16 20 H 0.10 2.09 8.00 -2.39 -0.02 2.07 16 21 O -0.57 -11.00 13.09 -148.98 -1.95 -12.95 16 22 C 0.08 0.70 6.09 86.38 0.53 1.23 16 23 N -0.28 -4.59 3.39 -347.72 -1.18 -5.77 16 24 C -0.03 -0.36 11.57 83.49 0.97 0.61 16 25 C -0.07 -1.23 12.05 83.73 1.01 -0.22 16 26 N -0.32 -8.51 12.41 -58.26 -0.72 -9.23 16 27 N -0.13 -3.34 12.83 37.02 0.47 -2.87 16 28 H 0.05 1.96 7.67 -2.39 -0.02 1.94 16 29 H 0.07 3.48 6.07 -2.39 -0.01 3.47 16 30 H 0.01 0.66 8.14 -2.38 -0.02 0.64 16 31 H 0.26 13.62 8.31 -92.71 -0.77 12.85 16 32 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.08 1.76 7.79 -2.38 -0.02 1.74 16 34 H 0.08 2.32 7.02 -2.39 -0.02 2.30 16 35 H 0.42 11.61 8.51 -96.75 -0.82 10.79 16 36 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.10 1.49 7.75 -2.39 -0.02 1.48 16 38 H 0.39 4.76 9.05 -74.06 -0.67 4.09 16 39 H 0.16 0.04 8.07 -2.39 -0.02 0.02 16 40 H 0.13 0.76 8.14 -2.39 -0.02 0.74 16 41 H 0.24 0.32 8.06 -2.91 -0.02 0.29 16 42 H 0.21 2.09 8.06 -2.91 -0.02 2.07 16 Total: -1.00 -79.75 366.58 -3.20 -82.95 By element: Atomic # 1 Polarization: 21.57 SS G_CDS: -0.43 Total: 21.14 kcal Atomic # 6 Polarization: -12.68 SS G_CDS: 5.71 Total: -6.98 kcal Atomic # 7 Polarization: -133.01 SS G_CDS: -3.94 Total: -136.95 kcal Atomic # 8 Polarization: -94.09 SS G_CDS: -6.22 Total: -100.31 kcal Atomic # 14 Polarization: 38.27 SS G_CDS: 2.03 Total: 40.30 kcal Atomic # 16 Polarization: 100.20 SS G_CDS: -0.34 Total: 99.85 kcal Total: -79.75 -3.20 -82.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001771771475.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.294 kcal (2) G-P(sol) polarization free energy of solvation -79.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds