Wall clock time and date at job start Tue Mar 31 2020 18:42:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09007 * 109.47192 * 2 1 4 4 C 1.50697 * 109.47191 * 239.99700 * 2 1 3 5 5 H 1.08008 * 119.99750 * 239.99786 * 4 2 1 6 6 C 1.37872 * 120.00285 * 60.00592 * 4 2 1 7 7 N 1.31514 * 120.00026 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 120.00094 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.46752 * 89.99755 * 8 6 4 10 10 H 1.48499 * 109.46771 * 209.99189 * 8 6 4 11 11 H 1.48491 * 109.47113 * 329.99799 * 8 6 4 12 12 N 1.46505 * 109.46878 * 119.99454 * 2 1 3 13 13 C 1.46500 * 119.99687 * 60.00496 * 12 2 1 14 14 S 1.65599 * 120.00001 * 240.00103 * 12 2 1 15 15 O 1.42095 * 106.40463 * 336.45938 * 14 12 2 16 16 O 1.42107 * 106.39954 * 203.54289 * 14 12 2 17 17 N 1.65593 * 107.21687 * 90.00247 * 14 12 2 18 18 C 1.46506 * 120.00245 * 64.99989 * 17 14 12 19 19 C 1.52997 * 109.47289 * 165.00019 * 18 17 14 20 20 H 1.08996 * 109.46952 * 59.99873 * 19 18 17 21 21 O 1.42906 * 109.46972 * 299.99632 * 19 18 17 22 22 C 1.52996 * 109.47131 * 180.02562 * 19 18 17 23 23 N 1.46495 * 109.47172 * 184.99857 * 22 19 18 24 24 C 1.35315 * 125.87062 * 124.99799 * 23 22 19 25 25 C 1.35345 * 106.18039 * 180.02562 * 24 23 22 26 26 N 1.33773 * 106.49407 * 0.02562 * 25 24 23 27 27 N 1.28638 * 108.88807 * 359.73074 * 26 25 24 28 28 H 1.08996 * 109.46748 * 180.02562 * 1 2 3 29 29 H 1.08989 * 109.47339 * 300.00388 * 1 2 3 30 30 H 1.08998 * 109.46757 * 60.00334 * 1 2 3 31 31 H 0.96996 * 120.00487 * 180.02562 * 7 6 4 32 32 H 1.09000 * 109.47065 * 269.99655 * 13 12 2 33 33 H 1.09001 * 109.47379 * 29.99542 * 13 12 2 34 34 H 1.08999 * 109.47061 * 150.00087 * 13 12 2 35 35 H 0.97000 * 120.00411 * 244.99661 * 17 14 12 36 36 H 1.09001 * 109.47060 * 285.00288 * 18 17 14 37 37 H 1.09004 * 109.47073 * 44.99777 * 18 17 14 38 38 H 0.96693 * 114.00213 * 300.00562 * 21 19 18 39 39 H 1.09007 * 109.46739 * 304.99950 * 22 19 18 40 40 H 1.09000 * 109.47315 * 64.99569 * 22 19 18 41 41 H 1.08008 * 126.91118 * 0.02562 * 24 23 22 42 42 H 1.07995 * 126.75474 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6533 -1.5886 -1.1312 6 6 1.6994 -0.2395 -2.4827 7 7 0.9430 0.8296 -2.6035 8 14 2.3228 -1.1198 -4.0078 9 1 1.3450 -2.1618 -4.4122 10 1 2.4875 -0.1405 -5.1119 11 1 3.6310 -1.7568 -3.7117 12 7 2.0183 -0.6905 1.1963 13 6 1.6644 -2.0931 1.4281 14 16 2.9703 0.1144 2.2863 15 8 3.5794 1.1830 1.5749 16 8 3.7118 -0.8788 2.9816 17 7 1.9606 0.8092 3.3997 18 6 1.1508 -0.0350 4.2817 19 6 0.6084 0.8078 5.4377 20 1 -0.0075 1.6149 5.0411 21 8 1.6994 1.3603 6.1771 22 6 -0.2367 -0.0740 6.3591 23 7 -0.8530 0.7549 7.3979 24 6 -2.1755 0.8251 7.6755 25 6 -2.3004 1.7040 8.6972 26 7 -1.0645 2.1234 8.9905 27 7 -0.2291 1.5384 8.2064 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8898 30 1 -0.3633 0.5138 -0.8900 31 1 0.7085 1.1608 -3.4844 32 1 0.7375 -2.1443 1.9994 33 1 1.5295 -2.5968 0.4709 34 1 2.4628 -2.5817 1.9866 35 1 1.9053 1.7752 3.4681 36 1 0.3187 -0.4565 3.7177 37 1 1.7668 -0.8422 4.6783 38 1 2.2907 0.6979 6.5598 39 1 -1.0160 -0.5658 5.7768 40 1 0.3989 -0.8271 6.8247 41 1 -2.9715 0.2879 7.1811 42 1 -3.2174 2.0076 9.1800 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001771771480.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:42:14 Heat of formation + Delta-G solvation = -18.010494 kcal Electronic energy + Delta-G solvation = -27362.248792 eV Core-core repulsion = 23314.229151 eV Total energy + Delta-G solvation = -4048.019641 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 333.130 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.46209 -38.62900 -36.74862 -36.25001 -35.31474 -34.72208 -34.40118 -32.64950 -31.24385 -30.34179 -29.19277 -26.36035 -25.60087 -25.24031 -23.09392 -22.65511 -21.73846 -20.87976 -18.92653 -18.29183 -17.46241 -17.22361 -16.98222 -16.57367 -16.11338 -15.97934 -15.50379 -15.20946 -15.01981 -14.65580 -14.26084 -14.04155 -13.63905 -13.49993 -13.23863 -12.83204 -12.65003 -12.12067 -11.95481 -11.91159 -11.75449 -11.65720 -11.54133 -11.42788 -11.30839 -11.12757 -10.99137 -10.88813 -10.82173 -10.54774 -10.31336 -10.17086 -10.12787 -9.62491 -9.48885 -9.34506 -8.51969 -8.08143 -6.13689 -4.20618 1.07950 1.35844 1.98788 2.37742 3.23617 3.31052 3.31997 3.36356 3.75702 3.99523 4.00942 4.12072 4.29784 4.34599 4.42435 4.57388 4.76565 4.81989 4.92922 4.96745 5.17770 5.18492 5.37528 5.48563 5.57367 5.79319 5.89285 5.95361 6.23559 6.26665 6.56303 6.67213 6.73935 6.93742 7.02393 7.30083 7.39299 7.54822 7.71607 7.97268 8.19989 8.30487 8.81376 9.45523 10.92043 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.022419 B = 0.002802 C = 0.002653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.616946 B = 9989.634083 C =10552.709731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.268 3.732 3 H 0.059 0.941 4 C -0.522 4.522 5 H 0.063 0.937 6 C 0.064 3.936 7 N -0.890 5.890 8 Si 0.899 3.101 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.273 1.273 12 N -0.989 5.989 13 C 0.095 3.905 14 S 2.781 3.219 15 O -0.970 6.970 16 O -0.997 6.997 17 N -1.126 6.126 18 C 0.094 3.906 19 C 0.093 3.907 20 H 0.113 0.887 21 O -0.534 6.534 22 C 0.079 3.921 23 N -0.288 5.288 24 C -0.057 4.057 25 C -0.054 4.054 26 N -0.279 5.279 27 N -0.058 5.058 28 H 0.032 0.968 29 H 0.009 0.991 30 H 0.092 0.908 31 H 0.264 0.736 32 H 0.035 0.965 33 H 0.084 0.916 34 H 0.062 0.938 35 H 0.417 0.583 36 H 0.077 0.923 37 H 0.083 0.917 38 H 0.379 0.621 39 H 0.121 0.879 40 H 0.108 0.892 41 H 0.190 0.810 42 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.443 -4.547 17.157 19.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.165 3.835 3 H 0.077 0.923 4 C -0.562 4.562 5 H 0.081 0.919 6 C -0.139 4.139 7 N -0.528 5.528 8 Si 0.726 3.274 9 H -0.207 1.207 10 H -0.211 1.211 11 H -0.198 1.198 12 N -0.832 5.832 13 C -0.052 4.052 14 S 2.790 3.210 15 O -0.954 6.954 16 O -0.980 6.980 17 N -0.885 5.885 18 C -0.035 4.035 19 C 0.031 3.969 20 H 0.131 0.869 21 O -0.338 6.338 22 C -0.043 4.043 23 N -0.083 5.083 24 C -0.207 4.207 25 C -0.211 4.211 26 N -0.145 5.145 27 N -0.039 5.039 28 H 0.051 0.949 29 H 0.028 0.972 30 H 0.111 0.889 31 H 0.074 0.926 32 H 0.053 0.947 33 H 0.103 0.897 34 H 0.081 0.919 35 H 0.250 0.750 36 H 0.095 0.905 37 H 0.102 0.898 38 H 0.227 0.773 39 H 0.139 0.861 40 H 0.127 0.873 41 H 0.207 0.793 42 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -6.437 -3.474 17.246 18.733 hybrid contribution -1.259 -1.190 -1.234 2.127 sum -7.696 -4.664 16.013 18.368 Atomic orbital electron populations 1.22108 0.98252 0.99652 1.00538 1.18739 0.91251 0.93065 0.80448 0.92339 1.21320 1.31727 1.13079 0.90041 0.91891 1.24908 0.94928 0.94975 0.99046 1.69849 1.36457 1.22629 1.23876 0.86488 0.79290 0.79284 0.82311 1.20652 1.21082 1.19815 1.57685 1.69946 1.19780 1.35755 1.21327 0.98489 0.82521 1.02819 1.01921 0.73565 0.73138 0.72418 1.93628 1.74139 1.55951 1.71696 1.93521 1.69157 1.60817 1.74549 1.56096 1.62330 1.17613 1.52434 1.21739 0.96322 0.93607 0.91816 1.22358 0.88591 0.96403 0.89538 0.86884 1.86738 1.39264 1.36950 1.70860 1.22934 1.00157 0.93028 0.88203 1.47389 1.05862 1.30127 1.24873 1.23735 0.87354 1.06329 1.03289 1.23629 0.97912 1.00047 0.99510 1.75182 0.99887 1.20271 1.19185 1.78499 1.21155 1.03807 1.00406 0.94863 0.97221 0.88922 0.92634 0.94672 0.89733 0.91886 0.74959 0.90491 0.89829 0.77314 0.86135 0.87349 0.79314 0.79503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.09 8.97 37.16 0.33 -2.76 16 2 C 0.27 6.21 2.62 -69.08 -0.18 6.03 16 3 H 0.06 1.53 6.91 -51.92 -0.36 1.17 16 4 C -0.52 -13.53 7.99 -34.44 -0.28 -13.81 16 5 H 0.06 1.62 7.33 -52.48 -0.38 1.23 16 6 C 0.06 1.69 5.30 -17.82 -0.09 1.59 16 7 N -0.89 -24.14 11.32 55.43 0.63 -23.52 16 8 Si 0.90 20.59 29.54 -169.99 -5.02 15.57 16 9 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 10 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 12 N -0.99 -18.78 3.12 -115.85 -0.36 -19.14 16 13 C 0.10 1.49 9.65 59.85 0.58 2.07 16 14 S 2.78 50.21 6.14 -107.50 -0.66 49.55 16 15 O -0.97 -21.89 16.70 -57.17 -0.95 -22.84 16 16 O -1.00 -18.88 16.21 -57.17 -0.93 -19.81 16 17 N -1.13 -14.54 5.92 -10.61 -0.06 -14.60 16 18 C 0.09 0.83 5.91 -4.04 -0.02 0.80 16 19 C 0.09 0.72 3.25 -26.73 -0.09 0.63 16 20 H 0.11 0.98 8.14 -51.93 -0.42 0.55 16 21 O -0.53 -5.29 12.23 -35.23 -0.43 -5.72 16 22 C 0.08 0.42 6.14 -4.05 -0.02 0.39 16 23 N -0.29 -2.46 3.44 -61.26 -0.21 -2.67 16 24 C -0.06 -0.39 11.57 -17.05 -0.20 -0.59 16 25 C -0.05 -0.47 12.05 -17.74 -0.21 -0.69 16 26 N -0.28 -3.55 12.41 30.23 0.38 -3.17 16 27 N -0.06 -0.72 12.10 60.35 0.73 0.01 16 28 H 0.03 0.66 7.67 -51.93 -0.40 0.26 16 29 H 0.01 0.16 8.14 -51.94 -0.42 -0.26 16 30 H 0.09 2.23 6.07 -51.93 -0.32 1.91 16 31 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 32 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.08 1.43 7.02 -51.93 -0.36 1.07 16 34 H 0.06 0.92 7.02 -51.93 -0.36 0.56 16 35 H 0.42 5.17 8.65 -34.47 -0.30 4.87 16 36 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.08 0.67 7.75 -51.93 -0.40 0.26 16 38 H 0.38 2.68 9.04 45.56 0.41 3.10 16 39 H 0.12 0.26 8.07 -51.93 -0.42 -0.16 16 40 H 0.11 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.19 0.53 8.06 -52.48 -0.42 0.10 16 42 H 0.19 1.00 8.06 -52.49 -0.42 0.58 16 LS Contribution 364.59 15.07 5.49 5.49 Total: -1.00 -36.61 364.59 -6.58 -43.19 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: -4.99 Total: 3.99 kcal Atomic # 6 Polarization: -6.14 SS G_CDS: -0.19 Total: -6.33 kcal Atomic # 7 Polarization: -64.19 SS G_CDS: 1.10 Total: -63.09 kcal Atomic # 8 Polarization: -46.06 SS G_CDS: -2.31 Total: -48.37 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Atomic # 16 Polarization: 50.21 SS G_CDS: -0.66 Total: 49.55 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -36.61 -6.58 -43.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001771771480.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.176 kcal (2) G-P(sol) polarization free energy of solvation -36.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds