Wall clock time and date at job start Tue Mar 31 2020 18:42:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09007 * 109.47192 * 2 1 4 4 C 1.50697 * 109.47191 * 239.99700 * 2 1 3 5 5 H 1.08008 * 119.99750 * 239.99786 * 4 2 1 6 6 C 1.37872 * 120.00285 * 60.00592 * 4 2 1 7 7 N 1.31514 * 120.00026 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 120.00094 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.46752 * 89.99755 * 8 6 4 10 10 H 1.48499 * 109.46771 * 209.99189 * 8 6 4 11 11 H 1.48491 * 109.47113 * 329.99799 * 8 6 4 12 12 N 1.46505 * 109.46878 * 119.99454 * 2 1 3 13 13 C 1.46500 * 119.99687 * 60.00496 * 12 2 1 14 14 S 1.65599 * 120.00001 * 240.00103 * 12 2 1 15 15 O 1.42095 * 106.40463 * 336.45938 * 14 12 2 16 16 O 1.42107 * 106.39954 * 203.54289 * 14 12 2 17 17 N 1.65593 * 107.21687 * 90.00247 * 14 12 2 18 18 C 1.46506 * 120.00245 * 64.99989 * 17 14 12 19 19 C 1.52997 * 109.47289 * 165.00019 * 18 17 14 20 20 H 1.08996 * 109.46952 * 59.99873 * 19 18 17 21 21 O 1.42906 * 109.46972 * 299.99632 * 19 18 17 22 22 C 1.52996 * 109.47131 * 180.02562 * 19 18 17 23 23 N 1.46495 * 109.47172 * 184.99857 * 22 19 18 24 24 C 1.35315 * 125.87062 * 124.99799 * 23 22 19 25 25 C 1.35345 * 106.18039 * 180.02562 * 24 23 22 26 26 N 1.33773 * 106.49407 * 0.02562 * 25 24 23 27 27 N 1.28638 * 108.88807 * 359.73074 * 26 25 24 28 28 H 1.08996 * 109.46748 * 180.02562 * 1 2 3 29 29 H 1.08989 * 109.47339 * 300.00388 * 1 2 3 30 30 H 1.08998 * 109.46757 * 60.00334 * 1 2 3 31 31 H 0.96996 * 120.00487 * 180.02562 * 7 6 4 32 32 H 1.09000 * 109.47065 * 269.99655 * 13 12 2 33 33 H 1.09001 * 109.47379 * 29.99542 * 13 12 2 34 34 H 1.08999 * 109.47061 * 150.00087 * 13 12 2 35 35 H 0.97000 * 120.00411 * 244.99661 * 17 14 12 36 36 H 1.09001 * 109.47060 * 285.00288 * 18 17 14 37 37 H 1.09004 * 109.47073 * 44.99777 * 18 17 14 38 38 H 0.96693 * 114.00213 * 300.00562 * 21 19 18 39 39 H 1.09007 * 109.46739 * 304.99950 * 22 19 18 40 40 H 1.09000 * 109.47315 * 64.99569 * 22 19 18 41 41 H 1.08008 * 126.91118 * 0.02562 * 24 23 22 42 42 H 1.07995 * 126.75474 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6533 -1.5886 -1.1312 6 6 1.6994 -0.2395 -2.4827 7 7 0.9430 0.8296 -2.6035 8 14 2.3228 -1.1198 -4.0078 9 1 1.3450 -2.1618 -4.4122 10 1 2.4875 -0.1405 -5.1119 11 1 3.6310 -1.7568 -3.7117 12 7 2.0183 -0.6905 1.1963 13 6 1.6644 -2.0931 1.4281 14 16 2.9703 0.1144 2.2863 15 8 3.5794 1.1830 1.5749 16 8 3.7118 -0.8788 2.9816 17 7 1.9606 0.8092 3.3997 18 6 1.1508 -0.0350 4.2817 19 6 0.6084 0.8078 5.4377 20 1 -0.0075 1.6149 5.0411 21 8 1.6994 1.3603 6.1771 22 6 -0.2367 -0.0740 6.3591 23 7 -0.8530 0.7549 7.3979 24 6 -2.1755 0.8251 7.6755 25 6 -2.3004 1.7040 8.6972 26 7 -1.0645 2.1234 8.9905 27 7 -0.2291 1.5384 8.2064 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8898 30 1 -0.3633 0.5138 -0.8900 31 1 0.7085 1.1608 -3.4844 32 1 0.7375 -2.1443 1.9994 33 1 1.5295 -2.5968 0.4709 34 1 2.4628 -2.5817 1.9866 35 1 1.9053 1.7752 3.4681 36 1 0.3187 -0.4565 3.7177 37 1 1.7668 -0.8422 4.6783 38 1 2.2907 0.6979 6.5598 39 1 -1.0160 -0.5658 5.7768 40 1 0.3989 -0.8271 6.8247 41 1 -2.9715 0.2879 7.1811 42 1 -3.2174 2.0076 9.1800 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001771771480.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:42:13 Heat of formation + Delta-G solvation = -50.842500 kcal Electronic energy + Delta-G solvation = -27363.672495 eV Core-core repulsion = 23314.229151 eV Total energy + Delta-G solvation = -4049.443344 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 333.130 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -44.08255 -39.30076 -38.29094 -37.85526 -36.87124 -35.51691 -35.15841 -34.50353 -31.84599 -31.03674 -30.88364 -27.21943 -27.11787 -26.86157 -23.74849 -23.28496 -22.62575 -22.28973 -20.23966 -18.99447 -18.81298 -18.57660 -18.09817 -17.80180 -17.19145 -16.87160 -16.68101 -16.35038 -15.81519 -15.66417 -15.21218 -15.06386 -14.86132 -14.67338 -14.45330 -14.02985 -13.76584 -13.44004 -13.30439 -13.13430 -13.12670 -13.06574 -12.98711 -12.68480 -12.59249 -12.57202 -12.28426 -12.20888 -12.11202 -11.89096 -11.77508 -11.49122 -11.14401 -10.83583 -10.51077 -10.43622 -10.23232 -9.62859 -8.11478 -6.24592 -0.31659 0.77380 1.41799 1.44993 1.51247 1.53605 1.71954 2.08704 2.43468 2.64603 3.17365 3.25210 3.43998 3.54156 3.63192 3.76223 3.86379 4.13077 4.18939 4.34802 4.38531 4.42151 4.51398 4.77751 4.79853 4.82311 4.84980 4.97578 5.04424 5.09408 5.20373 5.32845 5.34256 5.62904 5.71275 5.75496 5.90095 6.04127 6.20662 6.32339 6.77058 6.83749 7.44529 7.64322 8.92429 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.022419 B = 0.002802 C = 0.002653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.616946 B = 9989.634083 C =10552.709731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.273 3.727 3 H 0.021 0.979 4 C -0.538 4.538 5 H 0.057 0.943 6 C 0.017 3.983 7 N -0.914 5.914 8 Si 0.953 3.047 9 H -0.268 1.268 10 H -0.287 1.287 11 H -0.276 1.276 12 N -0.995 5.995 13 C 0.088 3.912 14 S 2.799 3.201 15 O -1.024 7.024 16 O -1.007 7.007 17 N -1.115 6.115 18 C 0.085 3.915 19 C 0.100 3.900 20 H 0.102 0.898 21 O -0.560 6.560 22 C 0.077 3.923 23 N -0.286 5.286 24 C -0.039 4.039 25 C -0.073 4.073 26 N -0.327 5.327 27 N -0.104 5.104 28 H 0.045 0.955 29 H 0.039 0.961 30 H 0.062 0.938 31 H 0.264 0.736 32 H 0.078 0.922 33 H 0.068 0.932 34 H 0.072 0.928 35 H 0.420 0.580 36 H 0.103 0.897 37 H 0.097 0.903 38 H 0.388 0.612 39 H 0.163 0.837 40 H 0.127 0.873 41 H 0.236 0.764 42 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.410 -6.735 17.822 21.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.169 3.831 3 H 0.038 0.962 4 C -0.577 4.577 5 H 0.076 0.924 6 C -0.182 4.182 7 N -0.553 5.553 8 Si 0.779 3.221 9 H -0.193 1.193 10 H -0.212 1.212 11 H -0.201 1.201 12 N -0.837 5.837 13 C -0.057 4.057 14 S 2.808 3.192 15 O -1.008 7.008 16 O -0.990 6.990 17 N -0.878 5.878 18 C -0.042 4.042 19 C 0.038 3.962 20 H 0.120 0.880 21 O -0.367 6.367 22 C -0.044 4.044 23 N -0.081 5.081 24 C -0.190 4.190 25 C -0.231 4.231 26 N -0.193 5.193 27 N -0.084 5.084 28 H 0.064 0.936 29 H 0.058 0.942 30 H 0.080 0.920 31 H 0.073 0.927 32 H 0.097 0.903 33 H 0.087 0.913 34 H 0.091 0.909 35 H 0.255 0.745 36 H 0.121 0.879 37 H 0.115 0.885 38 H 0.238 0.762 39 H 0.181 0.819 40 H 0.145 0.855 41 H 0.253 0.747 42 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -8.381 -5.696 17.924 20.591 hybrid contribution -0.684 -0.539 -1.360 1.614 sum -9.065 -6.235 16.565 19.886 Atomic orbital electron populations 1.21884 0.96467 1.00391 1.00478 1.18374 0.92453 0.91162 0.81147 0.96166 1.21680 1.31508 1.13011 0.91536 0.92429 1.25614 0.95292 0.95692 1.01638 1.69971 1.37392 1.23677 1.24285 0.85635 0.78803 0.78446 0.79212 1.19322 1.21243 1.20053 1.57515 1.69956 1.21203 1.35034 1.21566 1.00942 0.80414 1.02821 1.01092 0.73549 0.72173 0.72346 1.93553 1.75998 1.57775 1.73473 1.93502 1.69811 1.61180 1.74528 1.55638 1.62350 1.18053 1.51744 1.22120 0.96832 0.93442 0.91793 1.22280 0.88203 0.96305 0.89452 0.87998 1.86710 1.40309 1.38416 1.71265 1.23203 1.01473 0.92176 0.87561 1.47654 1.06544 1.29394 1.24466 1.24455 0.87507 1.04954 1.02057 1.24227 0.97662 1.00618 1.00551 1.75107 1.01711 1.21841 1.20607 1.78431 1.22092 1.05812 1.02035 0.93559 0.94247 0.91970 0.92715 0.90340 0.91308 0.90926 0.74535 0.87910 0.88458 0.76235 0.81937 0.85514 0.74745 0.77163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.43 8.97 71.98 0.65 -4.78 16 2 C 0.27 12.63 2.62 44.24 0.12 12.75 16 3 H 0.02 1.10 6.91 -2.38 -0.02 1.08 16 4 C -0.54 -28.00 7.99 25.60 0.20 -27.80 16 5 H 0.06 2.97 7.33 -2.91 -0.02 2.95 16 6 C 0.02 0.93 5.30 84.65 0.45 1.37 16 7 N -0.91 -50.22 11.32 21.45 0.24 -49.97 16 8 Si 0.95 42.25 29.54 68.60 2.03 44.28 16 9 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 10 H -0.29 -12.68 7.11 99.48 0.71 -11.97 16 11 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 12 N -1.00 -36.50 3.12 -520.43 -1.62 -38.12 16 13 C 0.09 2.52 9.65 127.77 1.23 3.75 16 14 S 2.80 99.21 6.14 -56.49 -0.35 98.86 16 15 O -1.02 -47.43 16.70 -128.00 -2.14 -49.57 16 16 O -1.01 -36.77 16.21 -128.00 -2.08 -38.85 16 17 N -1.12 -26.99 5.92 -187.48 -1.11 -28.10 16 18 C 0.08 1.20 5.91 86.38 0.51 1.72 16 19 C 0.10 1.27 3.25 30.59 0.10 1.37 16 20 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 21 O -0.56 -10.54 12.23 -148.98 -1.82 -12.36 16 22 C 0.08 0.50 6.14 86.38 0.53 1.03 16 23 N -0.29 -4.13 3.44 -347.74 -1.20 -5.32 16 24 C -0.04 -0.40 11.57 83.49 0.97 0.56 16 25 C -0.07 -1.16 12.05 83.73 1.01 -0.15 16 26 N -0.33 -8.28 12.41 -58.26 -0.72 -9.00 16 27 N -0.10 -2.50 12.10 37.02 0.45 -2.05 16 28 H 0.05 1.73 7.67 -2.39 -0.02 1.71 16 29 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.06 2.96 6.07 -2.39 -0.01 2.95 16 31 H 0.26 13.82 8.31 -92.71 -0.77 13.05 16 32 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.07 2.20 7.02 -2.39 -0.02 2.18 16 34 H 0.07 1.93 7.02 -2.39 -0.02 1.92 16 35 H 0.42 10.11 8.65 -96.75 -0.84 9.27 16 36 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 37 H 0.10 1.17 7.75 -2.38 -0.02 1.15 16 38 H 0.39 5.12 9.04 -74.06 -0.67 4.45 16 39 H 0.16 -0.31 8.07 -2.38 -0.02 -0.32 16 40 H 0.13 0.41 8.14 -2.39 -0.02 0.40 16 41 H 0.24 -0.04 8.06 -2.91 -0.02 -0.06 16 42 H 0.21 1.86 8.06 -2.91 -0.02 1.84 16 Total: -1.00 -83.49 364.59 -3.00 -86.49 By element: Atomic # 1 Polarization: 14.34 SS G_CDS: -0.44 Total: 13.90 kcal Atomic # 6 Polarization: -15.94 SS G_CDS: 5.76 Total: -10.18 kcal Atomic # 7 Polarization: -128.61 SS G_CDS: -3.96 Total: -132.57 kcal Atomic # 8 Polarization: -94.74 SS G_CDS: -6.04 Total: -100.78 kcal Atomic # 14 Polarization: 42.25 SS G_CDS: 2.03 Total: 44.28 kcal Atomic # 16 Polarization: 99.21 SS G_CDS: -0.35 Total: 98.86 kcal Total: -83.49 -3.00 -86.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001771771480.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.645 kcal (2) G-P(sol) polarization free energy of solvation -83.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds