Wall clock time and date at job start Tue Mar 31 2020 18:41:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42900 * 113.99992 * 2 1 4 4 C 1.50704 * 109.46854 * 179.97438 * 3 2 1 5 5 N 1.30711 * 125.52935 * 269.95667 * 4 3 2 6 6 N 1.40442 * 106.79415 * 179.78668 * 5 4 3 7 7 H 0.96999 * 126.82196 * 180.25390 * 6 5 4 8 8 C 1.34432 * 106.35132 * 0.40700 * 6 5 4 9 9 C 1.50700 * 125.95978 * 179.85812 * 8 6 5 10 10 N 1.46500 * 109.47412 * 94.71167 * 9 8 6 11 11 S 1.65593 * 119.99925 * 164.99847 * 10 9 8 12 12 O 1.42096 * 106.40460 * 311.46213 * 11 10 9 13 13 O 1.42108 * 106.40218 * 178.54273 * 11 10 9 14 14 N 1.65606 * 107.21842 * 65.00539 * 11 10 9 15 15 C 1.46497 * 119.99739 * 269.99739 * 14 11 10 16 16 C 1.46497 * 120.00188 * 89.99816 * 14 11 10 17 17 H 1.09007 * 109.47078 * 359.97438 * 16 14 11 18 18 C 1.53000 * 109.47021 * 240.00233 * 16 14 11 19 19 C 1.50694 * 109.47115 * 120.00014 * 16 14 11 20 20 H 1.08000 * 120.00563 * 359.97438 * 19 16 14 21 21 C 1.37885 * 119.99902 * 180.02562 * 19 16 14 22 22 N 1.31516 * 119.99913 * 359.97438 * 21 19 16 23 23 Si 1.86798 * 119.99766 * 179.97438 * 21 19 16 24 24 H 1.48506 * 109.46985 * 179.97438 * 23 21 19 25 25 H 1.48494 * 109.47276 * 299.99832 * 23 21 19 26 26 H 1.48498 * 109.47150 * 60.00043 * 23 21 19 27 27 N 1.30832 * 108.07661 * 359.59211 * 8 6 5 28 28 H 1.09000 * 109.47375 * 299.99609 * 1 2 3 29 29 H 1.08996 * 109.47417 * 60.00349 * 1 2 3 30 30 H 1.09005 * 109.47193 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.46950 * 60.00301 * 3 2 1 32 32 H 1.08994 * 109.46928 * 299.99679 * 3 2 1 33 33 H 1.09006 * 109.46596 * 334.71079 * 9 8 6 34 34 H 1.09004 * 109.47086 * 214.71379 * 9 8 6 35 35 H 0.97005 * 119.99538 * 345.00608 * 10 9 8 36 36 H 1.09001 * 109.46905 * 270.00036 * 15 14 11 37 37 H 1.09005 * 109.47144 * 29.99977 * 15 14 11 38 38 H 1.08993 * 109.47302 * 150.00165 * 15 14 11 39 39 H 1.08998 * 109.47089 * 59.99825 * 18 16 14 40 40 H 1.08995 * 109.47131 * 179.97438 * 18 16 14 41 41 H 1.09002 * 109.47106 * 299.99878 * 18 16 14 42 42 H 0.97001 * 119.99646 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1864 0.0006 5 7 4.2694 1.1274 1.0647 6 7 5.5950 1.0169 0.6142 7 1 6.3918 0.9495 1.1631 8 6 5.5402 1.0265 -0.7290 9 6 6.7189 0.9332 -1.6634 10 7 6.9182 -0.4628 -2.0604 11 16 7.8873 -0.8257 -3.3531 12 8 7.4779 0.0271 -4.4135 13 8 7.9031 -2.2429 -3.4575 14 7 9.4283 -0.3690 -2.9541 15 6 9.8941 0.9852 -3.2628 16 6 10.3257 -1.3192 -2.2923 17 1 9.8074 -2.2669 -2.1457 18 6 10.7528 -0.7568 -0.9350 19 6 11.5446 -1.5402 -3.1505 20 1 11.6410 -1.0248 -4.0947 21 6 12.5363 -2.4013 -2.7308 22 7 12.4188 -3.0293 -1.5812 23 14 14.0468 -2.6758 -3.7950 24 1 14.9566 -3.6389 -3.1241 25 1 13.6318 -3.2214 -5.1122 26 1 14.7532 -1.3848 -3.9942 27 7 4.2847 1.1251 -1.0834 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.6886 1.8463 0.8900 32 1 1.6886 1.8463 -0.8900 33 1 7.6130 1.2984 -1.1579 34 1 6.5292 1.5394 -2.5492 35 1 6.4823 -1.1746 -1.5660 36 1 10.3429 0.9974 -4.2561 37 1 9.0500 1.6745 -3.2370 38 1 10.6358 1.2913 -2.5252 39 1 9.8712 -0.5969 -0.3143 40 1 11.4201 -1.4639 -0.4424 41 1 11.2710 0.1910 -1.0812 42 1 13.1163 -3.6353 -1.2862 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001771771928.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:41:54 Heat of formation + Delta-G solvation = -24.653312 kcal Electronic energy + Delta-G solvation = -26996.032302 eV Core-core repulsion = 22947.724606 eV Total energy + Delta-G solvation = -4048.307695 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 333.130 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.48928 -38.16473 -36.78170 -36.28099 -35.60059 -35.29965 -33.09687 -32.63681 -31.67858 -29.17967 -28.56129 -26.65677 -26.00624 -25.66911 -25.18309 -21.86865 -20.92987 -20.84804 -19.03173 -18.38811 -17.42985 -16.97805 -16.91958 -16.65980 -16.08200 -15.94708 -15.75940 -15.30320 -15.07980 -14.43238 -14.13061 -13.92231 -13.52860 -13.25700 -12.98006 -12.87153 -12.73253 -12.31450 -12.10786 -11.85046 -11.81060 -11.65971 -11.53268 -11.41953 -11.30118 -11.01693 -10.84938 -10.55784 -10.45145 -10.36855 -10.34893 -10.08947 -10.07574 -9.96326 -9.61790 -9.32164 -8.49663 -8.07459 -6.11641 -4.18260 0.91002 1.30377 2.22478 2.37016 3.28116 3.32831 3.35638 3.36310 3.43381 3.85394 4.05012 4.25530 4.37173 4.40572 4.83968 4.85745 4.90368 5.01950 5.04357 5.12992 5.20133 5.32528 5.35204 5.44884 5.67279 5.85808 6.01191 6.03925 6.28794 6.53959 6.65165 6.69725 6.69988 6.71092 6.88952 6.95203 7.38171 7.56590 7.72882 7.75626 7.98015 8.21799 8.83852 9.47880 10.94077 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.023973 B = 0.002701 C = 0.002639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.683642 B =10365.767426 C =10607.692565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.384 6.384 3 C 0.159 3.841 4 C 0.223 3.777 5 N -0.289 5.289 6 N -0.466 5.466 7 H 0.446 0.554 8 C 0.283 3.717 9 C 0.203 3.797 10 N -1.129 6.129 11 S 2.781 3.219 12 O -0.988 6.988 13 O -0.966 6.966 14 N -0.989 5.989 15 C 0.106 3.894 16 C 0.267 3.733 17 H 0.060 0.940 18 C -0.148 4.148 19 C -0.521 4.521 20 H 0.063 0.937 21 C 0.064 3.936 22 N -0.891 5.891 23 Si 0.899 3.101 24 H -0.287 1.287 25 H -0.276 1.276 26 H -0.277 1.277 27 N -0.509 5.509 28 H 0.044 0.956 29 H 0.046 0.954 30 H 0.090 0.910 31 H 0.076 0.924 32 H 0.082 0.918 33 H 0.092 0.908 34 H 0.116 0.884 35 H 0.416 0.584 36 H 0.052 0.948 37 H 0.048 0.952 38 H 0.073 0.927 39 H 0.009 0.991 40 H 0.093 0.907 41 H 0.034 0.966 42 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.243 11.354 6.128 20.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.301 6.301 3 C 0.080 3.920 4 C -0.060 4.060 5 N -0.121 5.121 6 N -0.186 5.186 7 H 0.293 0.707 8 C 0.002 3.998 9 C 0.073 3.927 10 N -0.888 5.888 11 S 2.789 3.211 12 O -0.971 6.971 13 O -0.950 6.950 14 N -0.832 5.832 15 C -0.041 4.041 16 C 0.164 3.836 17 H 0.077 0.923 18 C -0.207 4.207 19 C -0.560 4.560 20 H 0.081 0.919 21 C -0.139 4.139 22 N -0.529 5.529 23 Si 0.727 3.273 24 H -0.212 1.212 25 H -0.201 1.201 26 H -0.202 1.202 27 N -0.239 5.239 28 H 0.062 0.938 29 H 0.065 0.935 30 H 0.108 0.892 31 H 0.094 0.906 32 H 0.100 0.900 33 H 0.110 0.890 34 H 0.134 0.866 35 H 0.249 0.751 36 H 0.070 0.930 37 H 0.067 0.933 38 H 0.092 0.908 39 H 0.028 0.972 40 H 0.112 0.888 41 H 0.053 0.947 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -16.715 10.848 5.675 20.719 hybrid contribution 1.341 -0.196 0.455 1.429 sum -15.375 10.652 6.130 19.683 Atomic orbital electron populations 1.22790 0.79948 1.03305 1.00263 1.87957 1.20309 1.26374 1.95505 1.20405 0.83186 0.85951 1.02450 1.23756 0.97008 0.99402 0.85812 1.77993 0.87174 1.24679 1.22229 1.48073 1.08349 1.55760 1.06442 0.70708 1.24253 0.94971 0.96680 0.83859 1.19634 0.91152 0.84866 0.97037 1.56363 1.66668 1.11740 1.54010 1.02041 0.72643 0.73319 0.73106 1.93556 1.82217 1.69225 1.52138 1.93637 1.86588 1.29391 1.85362 1.57745 1.28517 1.21455 1.75532 1.21209 0.99379 0.81775 1.01690 1.18755 0.88871 0.86308 0.89618 0.92261 1.22130 0.99282 1.01216 0.98120 1.21282 1.03161 1.26247 1.05336 0.91910 1.24911 0.98431 0.95313 0.95230 1.69841 1.34443 1.28570 1.20091 0.86541 0.82187 0.77997 0.80584 1.21246 1.20122 1.20233 1.70379 0.99812 1.22989 1.30722 0.93754 0.93537 0.89186 0.90629 0.89999 0.89043 0.86629 0.75095 0.92968 0.93296 0.90826 0.97218 0.88825 0.94660 0.92611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 11.01 101.05 1.11 1.34 16 2 O -0.38 -4.30 10.69 -35.23 -0.38 -4.67 16 3 C 0.16 1.55 6.56 36.01 0.24 1.79 16 4 C 0.22 2.87 7.77 -156.86 -1.22 1.65 16 5 N -0.29 -3.65 12.80 32.42 0.41 -3.24 16 6 N -0.47 -4.93 7.45 32.62 0.24 -4.69 16 7 H 0.45 3.30 8.96 -182.34 -1.63 1.67 16 8 C 0.28 3.36 7.63 -155.69 -1.19 2.17 16 9 C 0.20 2.24 6.87 -5.19 -0.04 2.20 16 10 N -1.13 -15.60 6.05 -11.65 -0.07 -15.67 16 11 S 2.78 51.10 6.09 -107.50 -0.66 50.44 16 12 O -0.99 -19.37 16.68 -57.17 -0.95 -20.33 16 13 O -0.97 -21.80 16.70 -57.17 -0.95 -22.75 16 14 N -0.99 -18.77 3.12 -115.86 -0.36 -19.13 16 15 C 0.11 1.67 9.53 59.85 0.57 2.24 16 16 C 0.27 6.15 2.62 -69.09 -0.18 5.97 16 17 H 0.06 1.53 6.91 -51.92 -0.36 1.17 16 18 C -0.15 -3.08 8.95 37.16 0.33 -2.75 16 19 C -0.52 -13.50 8.37 -34.44 -0.29 -13.79 16 20 H 0.06 1.62 7.65 -52.49 -0.40 1.22 16 21 C 0.06 1.68 5.30 -17.82 -0.09 1.58 16 22 N -0.89 -24.14 11.32 55.43 0.63 -23.51 16 23 Si 0.90 20.70 29.54 -169.99 -5.02 15.68 16 24 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 25 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 26 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 27 N -0.51 -7.04 11.19 -8.16 -0.09 -7.14 16 28 H 0.04 0.23 8.14 -51.93 -0.42 -0.20 16 29 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.12 1.26 7.75 -51.93 -0.40 0.85 16 35 H 0.42 5.47 8.64 -34.47 -0.30 5.17 16 36 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.05 0.60 7.79 -51.93 -0.40 0.20 16 38 H 0.07 1.11 6.43 -51.93 -0.33 0.77 16 39 H 0.01 0.16 8.14 -51.93 -0.42 -0.27 16 40 H 0.09 2.22 6.07 -51.93 -0.32 1.91 16 41 H 0.03 0.68 6.66 -51.93 -0.35 0.34 16 42 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 LS Contribution 367.87 15.07 5.54 5.54 Total: -1.00 -35.17 367.87 -9.42 -44.59 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: -7.01 Total: 2.46 kcal Atomic # 6 Polarization: 3.17 SS G_CDS: -0.76 Total: 2.41 kcal Atomic # 7 Polarization: -74.14 SS G_CDS: 0.76 Total: -73.38 kcal Atomic # 8 Polarization: -45.47 SS G_CDS: -2.29 Total: -47.75 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Atomic # 16 Polarization: 51.10 SS G_CDS: -0.66 Total: 50.44 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -35.17 -9.42 -44.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001771771928.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.941 kcal (2) G-P(sol) polarization free energy of solvation -35.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds